BAC Information

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BAC

Clone NameB6Ng01-190C14
Chromosome14 (Build37)3 (Build37)
Map Location 124,530,592 - 124,531,80071,665,851 - 71,666,371
singlet/doubletsingletsinglet
Overlap geneFgf14
Upstream geneVgcnl1, Itgbl1, LOC668700
Downstream geneGA_x5J8B7W4W3R-189177-188236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190C14.bB6Ng01-190C14.g
ACCGA013989GA013990
length1,1971,185
definitionB6Ng01-190C14.b B6Ng01-190C14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(124,530,592 - 124,531,800)(71,665,851 - 71,666,371)
sequence
gaattcattcagtggaggctatgtagcagaaaaactggtcagtttctaat
aaatatcagaaataaaacccagaaagccatgcttagattggtgtgagata
tatacttaattattggaaatattttcatcaaaatatattcattattgtaa
ttcccattaaaacaaatatagttgtctgtccttctatatcctcttgttca
gtatccatactttcaaactagccactcagaagcattataaaatcttgtgc
ctgtgctgaacatatatgatagatagatagatagatagatagatagatag
atagatagatagatagattcttgatgtaactattccctaagcaatacata
aaacagctgcctccttattattcccttcataaagattcatcaataaagca
gatatggtatacatgaggaaatgtagtcaatacacaaatatttcaccatt
tcctaaaaatgactttaacttcctcagattgtagtatccacagaggctgg
gaagccctgcctatagaaactgagagatggctgtgtccctttccgtttca
aaactcatactgtatccttttaagaaatacaagcttttggattccaagta
taagtgagatcatatactgtatttcaaaatgaaaagataaaaataaaaat
acctcattgaaagagactatgccactgcttttttgtgtatatgtacacat
accaaataaacattcagttattaaactaagtaaaaataaattactaaaag
aaaatgtgtacaaatcgtacttcttttgaaagtcttccaaacaagtaatc
tataaggagaaataaaagatcataagaaatgtcatatttttcagggtttt
ttttatgaactaggttgtgttgcaaaatatggcaaacacatttccagacg
tgatattagtatttttccagatcaccaaacaatgatgaataattaataat
cagcttctgcagtagcatataaggaccaaatctcaaagtcaacgtgtcag
acccatgcacacacatcattagcttctgctgctgctctagctattttacc
aatactgtgctgagggcagtgtcatagtgcatcacttactgatgggtaga
ggtactctcattcatgctatgttacatcctgtcttcactcctgaatgcaa
caagcgcagttccacttgtatgaggtgaaacagtgctgttggagata

gaattccttgtttagctctgagccccattttttaatggggttattggatt
ttctggagaccaccttcttgagttctttatatatattgggtattagtccc
ctatctgatttaggataggttaagatcctttcccaatctgttggtggtct
ttttgtcttattgatggtgtcttttgccttgcagaagctttgcagtttca
tgaggtctcatttgtcaattctcaatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtgccaatatcttcgaggcttttccccaa
tttctcctctattagtttcagtgtctctggttttatgtggagctccttga
tccacttagatttgaccttattacaaggagataggaatggatcaattcga
attcttctacatgataaccaccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtctaagatcaagt
gaccataggtgtgtgggtttttttctgggtcttcaattctatttcattgg
tctacttgtctgttgctaaaccagtaccaggcagttttgttttgttttgt
ttttatcagaattgctctgtagtacagctttaggtcagacatggtgaatc
caccagaggttcttttatccttgagaagagattttgctatcctaggtttt
ttgttattccagatgaatttccagattgctctttctaattcgttgaaaaa
cataggttggaattttgatggggattgcattgaatctgtagattgctttt
ggcaagatagccatttttacaatgttgatcctcccaatccataagcatgg
gagatctttccatcttctgagatcttctttaatttctttcttcagagact
tgaagttcttatcatacagatctttcacttccttagttagagtcacgcca
aggtatttttatattatttgtgactatgagaaggtgtgtttcctaatttc
tttctcagctgtttatctttgtgtaaagaaagcattgacttggtttgagt
aactttatatcagctacttcacaagctgtttatcaggttagagttctctg
tgcattttaagggtcacatattaccatgattcactcgcaaacgatatatt
tgacctcttctttccaatttgtatatccccttgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_124530592_124531800
seq2: B6Ng01-190C14.b_53_1249

seq1  GAATTCATTCAGTGGAGGCTATGTAGCAGAAAAACTGGTCAGTTTCTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAGTGGAGGCTATGTAGCAGAAAAACTGGTCAGTTTCTAAT  50

seq1  AAATATCAGAAATAAAACCCAGAAAGCCATGCTTAGATTGGTGTGAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAGAAATAAAACCCAGAAAGCCATGCTTAGATTGGTGTGAGATA  100

seq1  TATACTTAATTATTGGAAATATTTTCATCAAAATATATTCATTATTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTAATTATTGGAAATATTTTCATCAAAATATATTCATTATTGTAA  150

seq1  TTCCCATTAAAACAAATATAGTTGTCTGTCCTTCTATATCCTCTTGTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTAAAACAAATATAGTTGTCTGTCCTTCTATATCCTCTTGTTCA  200

seq1  GTATCCATACTTTCAAACTAGCCACTCAGAAGCATTATAAAATCTTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCATACTTTCAAACTAGCCACTCAGAAGCATTATAAAATCTTGTGC  250

seq1  CTGTGCTGAACATATATGATAGATAGATAGATAGATAGATAGATAGATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGAACATATATGATAGATAGATAGATAGATAGATAGATAGATAG  300

seq1  ATAGATAGATAGATAGATTCTTGATGTAACTATTCCCTAAGCAATACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGATAGATAGATTCTTGATGTAACTATTCCCTAAGCAATACATA  350

seq1  AAACAGCTGCCTCCTTATTATTCCCTTCATAAAGATTCATCAATAAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTGCCTCCTTATTATTCCCTTCATAAAGATTCATCAATAAAGCA  400

seq1  GATATGGTATACATGAGGAAATGTAGTCAATACACAAATATTTCACCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGTATACATGAGGAAATGTAGTCAATACACAAATATTTCACCATT  450

seq1  TCCTAAAAATGACTTTAACTTCCTCAGATTGTAGTATCCACAGAGGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAAATGACTTTAACTTCCTCAGATTGTAGTATCCACAGAGGCTGG  500

seq1  GAAGCCCTGCCTATAGAAACTGAGAGATGGCTGTGTCCCTTTCCGTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCTGCCTATAGAAACTGAGAGATGGCTGTGTCCCTTTCCGTTTCA  550

seq1  AAACTCATACTGTATCCTTTTAAGAAATACAAGCTTTTGGATTCCAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATACTGTATCCTTTTAAGAAATACAAGCTTTTGGATTCCAAGTA  600

seq1  TAAGTGAGATCATATACTGTATTTCAAAATGAAAAGATAAAAATAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAGATCATATACTGTATTTCAAAATGAAAAGATAAAAATAAAAAT  650

seq1  ACCTCATTGAAAGAGACTATGCCACTGCTTTTTTGTGTATATGTACACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATTGAAAGAGACTATGCCACTGCTTTTTTGTGTATATGTACACAT  700

seq1  ACCAAATAAACATTCAGTTATTAAACTAAGTAAAAATAAATTACTAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATAAACATTCAGTTATTAAACTAAGTAAAAATAAATTACTAAAAG  750

seq1  AAAATGTGTACAAATCGTACTTCTTTTGAAAGTCTTCCAAACAAGTAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGTACAAATCGTACTTCTTTTGAAAGTCTTCCAAACAAGTAATC  800

seq1  TATAAGGAGAAATAAAAGATCATAAGAAATGTCATATTTTTCAGGGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGAGAAATAAAAGATCATAAGAAATGTCATATTTTTCAGGGTTTT  850

seq1  TTTTATGAACTAGGTTGTGTTGCAAAATATGGCAAACACATTTCCAGACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGAACTAGGTTGTGTTGCAAAATATGGCAAACACATTTCCAGACG  900

seq1  TGATATTAGTATTTTTCCAGATCACCAAACAATGATGAATAATTAATAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTAGTATTTTTCCAGATCACCAAACAATGATGAATAATTAATAAT  950

seq1  CAGCTTCTGCAGTAGCATAATAAGGACCAAATCTCAAAGTCAACGTGTCA  1000
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGCTTCTGCAGTAGCAT-ATAAGGACCAAATCTCAAAGTCAACGTGTCA  999

seq1  GAACCCATGCACACACATCATTAGCTTCTGCTGCTGCTCTAGCTATTTTA  1050
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-ACCCATGCACACACATCATTAGCTTCTGCTGCTGCTCTAGCTATTTTA  1048

seq1  CCAATACTGTGCTGAGGGCCAGTGTCATTAGTGCATCACTTACTGATGGG  1100
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  CCAATACTGTGCTGAGGG-CAGTGTCA-TAGTGCATCACTTACTGATGGG  1096

seq1  TAGAGGTAACCTTCTCCATTCATTGCTATGTACAACCCTGTCTTCACTCC  1150
      ||||||||  ||    |||||| ||||||||   | |||||||||||| |
seq2  TAGAGGTACTCT----CATTCA-TGCTATGTTACATCCTGTCTTCACT-C  1140

seq1  CTGGATGGCAACAACGCGCAGTCCCACTGGGATGAGGTTGAACAGTGCTG  1200
      ||| || ||||||| ||||||| ||||| | |||||||  ||||||||||
seq2  CTGAAT-GCAACAA-GCGCAGTTCCACTTGTATGAGGTGAAACAGTGCTG  1188

seq1  TTGAAGATA  1209
      ||| |||||
seq2  TTGGAGATA  1197


seq1: chr3_71665851_71666371
seq2: B6Ng01-190C14.g_746_1248 (reverse)

seq1  ATCAAGGGG--ATACAAATTGGAAAAGAGGAAGTCAAA-ATATCACTTTT  47
      |||||||||  ||||||||||| ||||| || |||||| |||||    ||
seq2  ATCAAGGGGATATACAAATTGG-AAAGAAGAGGTCAAATATATC---GTT  46

seq1  TGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCCAACAGAG  97
      |||   ||| || || |||   ||| |||||||| ||||| |  ||||||
seq2  TGCGAGTGA-ATCATGGTA---ATATGTGACCCTTAAAATGC--ACAGAG  90

seq1  AACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATA  147
      |||||   |||||||||||||||||  ||||||||||| |||||||| | 
seq2  AACTC--TAACCTGATAAACAGCTT--GTGAAGTAGCT-GATATAAAGT-  134

seq1  AACTCAAA-CAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTG  196
       ||||||| ||||||||||  |||||| || |||||| ||||||| ||||
seq2  TACTCAAACCAAGTCAATG--CTTTCTTTACACAAAG-ATAAACA-GCTG  180

seq1  AGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATAT-  245
      |||||||||||| |||||| ||| ||||||| ||||||||||||||||| 
seq2  AGAAAGAAATTA-GGAAAC-ACA-CCTTCTC-ATAGTCACAAATAATATA  226

seq1  AAAATATCTTGGCGTGACTCTAACTAAGGAGGTGAAAGATCTGTATGATA  295
      |||||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAATACCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATA  276

seq1  AAAACTTCAAATCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGG  345
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGG  326

seq1  AAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGC  395
      |||||||||||||||| ||||||||| |||||||||||||||||||||||
seq2  AAAGATCTCCCATGCTTATGGATTGGGAGGATCAACATTGTAAAAATGGC  376

seq1  TATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTC  426

seq1  CAA-CTCAATTCTTCAACGAATTGGAAGGAGCAATTTGCAAATTTGTCTG  494
      ||| ||   || ||||||||||| ||| ||||||| || |||||  ||||
seq2  CAACCTATGTTTTTCAACGAATTAGAAAGAGCAATCTGGAAATTCATCTG  476

seq1  GAATAACAAAAAACCTAGGATAGCAAA  521
      |||||||||||||||||||||||||||
seq2  GAATAACAAAAAACCTAGGATAGCAAA  503


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