BAC Information

Click to search

BAC

Clone NameB6Ng01-190D07
Chromosome3 (Build37)
Map Location 154,946,690 - 155,071,839
singlet/doubletdoublet
Overlap geneEG383956
Upstream geneLhx8, LOC100040810, LOC100040829, Tyw3, Cryz, BC007180, Tnni3k, Fpgt, Lrrc44
Downstream geneScp2-ps1, EG668902, LOC624519, LOC100040901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190D07.bB6Ng01-190D07.g
ACCGA014019GA014020
length1,156413
definitionB6Ng01-190D07.b B6Ng01-190D07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,946,690 - 154,947,857)(155,071,421 - 155,071,839)
sequence
gaattctcctgtctcagcctccaaagtactggggtacaaggcttgcgatt
caatgccatgcatgcttagagcacttttaaatgaatgaattctatgggct
ttgtttgtttgtttgtttgtttggttggttggttggcttgttttgttttg
tagtcaaagggcatgtatttggttcatctttaaataattatttaatattg
taatttcattcatttaaaaactactttgttattatgtctgtatggaggag
gtatgtgtatttgaatgtaggtgctcagaagaactagaagagaatatccc
ggtccccagcaccttgagttatagaaggttgtgaggtgttcttggaacta
tcttgagttctctgcaagagtagacatgctcctaactgtggagtgtttct
agctcctgctctacctttaataatagtgaacatggtaagagaggtgactg
acaatcccctgaccattctgttgaattagctctggaaggctggcatgttt
gtcacttgcctgaaactgtgacacaaggagttaattccttcaacttctgc
cagttagtattaaactgaggatgcatgaagccatctaattcctgataata
gtctttctctagagctcttggtgaaaagtatttatagttgaaacatatgt
gcccaagtctcacaaggcacagacatagttattcataaggaggccagcag
tctgctcttcttattgtgcagaaacaaaataattttgaggaaagacagga
aaatgggctataaatttgcccatgtctttggtgaaggcctaacaaatcaa
ccaggctcaagtctggattacactgctttgcatattgatgcattcaaact
tttggcaacttatgcttttccttgttctatgttttactttagttcatttc
cctacactcctcactagaaaggtagaacttattttttgtcattaagtaaa
aagatacagaatgcctcatagatcaaaatcaaagaaacattccatttcta
tcctttttgagaggatcaattttaacatattgtgtgtcactcatcagcca
cttcatgggaggtgatgagatgacattgtggtgtcagacgctgcactaca
tactaatctcacctccattctcccagcgctcatgttaaatcaggacttta
tgagaa

cttccccaaactcccacaaagagatgtaaacaaagtgactaccccaaggg
acatgtgacagtaactgtgtaaggcaaagggacatttcctcctgtggatt
ttctagcaaatcctctagacctattggatccccaggctgtgaatgctggg
tgaactgaatggttagtaccacccatggcgtctgtgtctagctgcatctt
ttctgggtcaaatgtctttggtttccagagaaaggtattgaaaatgctgt
cattgtttgcatatggcatcacttcataaagaaaggatgactgtgaggaa
gcagagtcctcaagtggcatttgagactcaaggagaaaactcagaggggt
tatttgacattcagaaatggctgcatgtgtgggtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_154946690_154947857
seq2: B6Ng01-190D07.b_41_1196

seq1  GAATTCTCCTGTCTCAGCCTCCAAAGTACTGGGGTACAAGGCTTGCGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGTCTCAGCCTCCAAAGTACTGGGGTACAAGGCTTGCGATT  50

seq1  CAATGCCATGCATGCTTAGAGCACTTTTAAATGAATGAATTCTATGGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCATGCATGCTTAGAGCACTTTTAAATGAATGAATTCTATGGGCT  100

seq1  TTGTTTGTTTGTTTGTTTGTTTGGTTGGTTGGTTGGCTTGTTTTGTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTGTTTGTTTGGTTGGTTGGTTGGCTTGTTTTGTTTTG  150

seq1  TAGTCAAAGGGCATGTATTTGGTTCATCTTTAAATAATTATTTAATATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAAAGGGCATGTATTTGGTTCATCTTTAAATAATTATTTAATATTG  200

seq1  TAATTTCATTCATTTAAAAACTACTTTGTTATTATGTCTGTATGGAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCATTCATTTAAAAACTACTTTGTTATTATGTCTGTATGGAGGAG  250

seq1  GTATGTGTATTTGAATGTAGGTGCTCAGAAGAACTAGAAGAGAATATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTATTTGAATGTAGGTGCTCAGAAGAACTAGAAGAGAATATCCC  300

seq1  GGTCCCCAGCACCTTGAGTTATAGAAGGTTGTGAGGTGTTCTTGGAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCAGCACCTTGAGTTATAGAAGGTTGTGAGGTGTTCTTGGAACTA  350

seq1  TCTTGAGTTCTCTGCAAGAGTAGACATGCTCCTAACTGTGGAGTGTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGTTCTCTGCAAGAGTAGACATGCTCCTAACTGTGGAGTGTTTCT  400

seq1  AGCTCCTGCTCTACCTTTAATAATAGTGAACATGGTAAGAGAGGTGACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGCTCTACCTTTAATAATAGTGAACATGGTAAGAGAGGTGACTG  450

seq1  ACAATCCCCTGACCATTCTGTTGAATTAGCTCTGGAAGGCTGGCATGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCCCTGACCATTCTGTTGAATTAGCTCTGGAAGGCTGGCATGTTT  500

seq1  GTCACTTGCCTGAAACTGTGACACAAGGAGTTAATTCCTTCAACTTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTGCCTGAAACTGTGACACAAGGAGTTAATTCCTTCAACTTCTGC  550

seq1  CAGTTAGTATTAAACTGAGGATGCATGAAGCCATCTAATTCCTGATAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGTATTAAACTGAGGATGCATGAAGCCATCTAATTCCTGATAATA  600

seq1  GTCTTTCTCTAGAGCTCTTGGTGAAAAGTATTTATAGTTGAAACATATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCTCTAGAGCTCTTGGTGAAAAGTATTTATAGTTGAAACATATGT  650

seq1  GCCCAAGTCTCACAAGGCACAGACATAGTTATTCATAAGGAGGCCAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGTCTCACAAGGCACAGACATAGTTATTCATAAGGAGGCCAGCAG  700

seq1  TCTGCTCTTCTTATTGTGCAGAAACAAAATAATTTTGAGGAAAGACAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCTTCTTATTGTGCAGAAACAAAATAATTTTGAGGAAAGACAGGA  750

seq1  AAATGGGCTATAAATTTGCCCATGTCTTTGGTGAAGGCCTAACAAATCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGCTATAAATTTGCCCATGTCTTTGGTGAAGGCCTAACAAATCAA  800

seq1  CCAGGCTCAAGTCTGGATTACACTGCTTTGCATATTGATGCATTCAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTCAAGTCTGGATTACACTGCTTTGCATATTGATGCATTCAAACT  850

seq1  TTTGGCAACTTATGCTTTTCCTTGTTCTATGTTTTACTTTAGTTCATTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCAACTTATGCTTTTCCTTGTTCTATGTTTTACTTTAGTTCATTTC  900

seq1  CCTACACTCCTCACTAGAAAGGTAGAACTTA-TTTTTGTCATTAAGTAAA  949
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCTACACTCCTCACTAGAAAGGTAGAACTTATTTTTTGTCATTAAGTAAA  950

seq1  AAGATACAGAATGCCTCATAAGATCAAAATCAAAAGAAACATTCCATTTC  999
      ||||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  AAGATACAGAATGCCTCAT-AGATCAAAATC-AAAGAAACATTCCATTTC  998

seq1  TTATCCTTTTTGAGAGGATCAATTTTAACATATTTGTGTGTCAACTCATC  1049
       ||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  -TATCCTTTTTGAGAGGATCAATTTTAACATA-TTGTGTGTC-ACTCATC  1045

seq1  AAGCCCACTTCATGGGAAGTTGATGAGATGAACATGT-GTGTCAGACGCT  1098
      |   |||||||||||| || |||||||||||   ||| ||||||||||||
seq2  A--GCCACTTCATGGG-AGGTGATGAGATGACATTGTGGTGTCAGACGCT  1092

seq1  GCACTACCATTAACTATTCTCAACTCCA-TCTCCCAAGGCGCTTCATGTA  1147
      |||||| |||  |||| ||||| ||||| |||||||  |||| |||||| 
seq2  GCACTA-CAT--ACTAATCTCACCTCCATTCTCCCA--GCGC-TCATGT-  1135

seq1  AAAATCAGGACTTTATGAGAA  1168
       ||||||||||||||||||||
seq2  TAAATCAGGACTTTATGAGAA  1156


seq1: chr3_155071421_155071839
seq2: B6Ng01-190D07.g_65_483 (reverse)

seq1  CACACACACACACACACACACACACACACACCCACACATGCAGCCATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACCCACACATGCAGCCATTTC  50

seq1  TGAATGTCAAATAACCCCTCTGAGTTTTCTCCTTGAGTCTCAAATGCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTCAAATAACCCCTCTGAGTTTTCTCCTTGAGTCTCAAATGCCAC  100

seq1  TTGAGGACTCTGCTTCCTCACAGTCATCCTTTCTTTATGAAGTGATGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGACTCTGCTTCCTCACAGTCATCCTTTCTTTATGAAGTGATGCCA  150

seq1  TATGCAAACAATGACAGCATTTTCAATACCTTTCTCTGGAAACCAAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAACAATGACAGCATTTTCAATACCTTTCTCTGGAAACCAAAGAC  200

seq1  ATTTGACCCAGAAAAGATGCAGCTAGACACAGACGCCATGGGTGGTACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACCCAGAAAAGATGCAGCTAGACACAGACGCCATGGGTGGTACTA  250

seq1  ACCATTCAGTTCACCCAGCATTCACAGCCTGGGGATCCAATAGGTCTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCAGTTCACCCAGCATTCACAGCCTGGGGATCCAATAGGTCTAGA  300

seq1  GGATTTGCTAGAAAATCCACAGGAGGAAATGTCCCTTTGCCTTACACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGCTAGAAAATCCACAGGAGGAAATGTCCCTTTGCCTTACACAGT  350

seq1  TACTGTCACATGTCCCTTGGGGTAGTCACTTTGTTTACATCTCTTTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCACATGTCCCTTGGGGTAGTCACTTTGTTTACATCTCTTTGTGG  400

seq1  GAGTTTGGGGAAGGAATTC  419
      |||||||||||||||||||
seq2  GAGTTTGGGGAAGGAATTC  419


| Home | SequenceCutter | Blast | Download |