BAC Information

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BAC

Clone NameB6Ng01-190K04
Chromosome3 (Build37)
Map Location 155,689,992 - 155,830,246
singlet/doubletdoublet
Overlap geneLOC624519
Upstream geneTnni3k, Fpgt, Lrrc44, EG383956, Scp2-ps1, EG668902
Downstream geneLOC100040901, 4930570G19Rik, Negr1, LOC100041152, LOC668853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190K04.bB6Ng01-190K04.g
ACCGA014342GA014343
length1,0911,146
definitionB6Ng01-190K04.b B6Ng01-190K04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,689,992 - 155,691,079)(155,829,107 - 155,830,246)
sequence
gaattcaaattgaaaggcaagaaacttcaagaattcattaggcaagagca
gatgaaaaaccttaagaagcagaggtgccctgctacccttgccagaggaa
cctgagaagggcgatgtgaactcaacacagggcttcagagtcactcagat
cccacactgggaaaaaacatgcattggtttaagtaatgaataaaacaagc
acaataaacaaaatttcagtttcatactgtaataaatggctggaaatgag
agacaatggaaagtttgatgagatgtttacatattcctggatgaattcaa
tagaagagacttagagaaaacttagtttcactctaaaggttaacaggaca
cactcagaccaacagagacaagagtagagcctgctgtggaaattccttgt
catgagggggagtcatggggtattatcaataggagaataccagcaaaaat
ttgtcaaagaaaccagtgccccatctagaaggaatcccaggctccaatat
atcatcagccataggagcctgactttaaacacactctgaggaaaacataa
catggtagtcattgcaaagtaactataaaatattcaaagaagcacaaagc
agacatttctggttcctttggagactgttgggccatgtagtgtttttctg
aaagttgtcctatgaaaggacgttttgctgaggcagatgcttgagaggac
atgtgatgcttgtaaagagtatgtgtagaacccagcaagccataaatgac
actcttgtattggcttgctttgcagtgctttgccagtcttcaccgatctt
tatttgccatggctttgtagaaagaaagagcaccaaagaacatcttgtgg
tattccggctgcttcctgtcactactgcagactcataccaatttggtgga
tcctctcggtttcttctgaatggagtctcagctactgagtactgttttgt
gttttcagattggactgctgttactgattcatggttgaagttttgcactg
gaatggctaatatcctgacaatgaagattggatcacccccaaaaggacta
gttataagcaggtacataatcccccttgtcctactatcttt

gaattccagaaataagctctgacataattcgtagaaatgtaaaaatgccc
agcacaagggaaggtacaattcagtgtctggtgtgcagtcaaactgtcat
gtgaaaagacaaaaacatggctaacccagaactgatatggaaactaggat
tagtgaatacaaattttggggtttttgtttctttatagaatcagtaaaat
tctgacattaagggaaaattaaatatattaatgagcagtattgggataca
tatgtgatttatgaactaagattatggataagatcaaaagtaaatttcac
agtgaagaaaaaattaacatgtaacagtaactatataaaagtcagcacac
aataaagaataaaattaatgtgatctcaaacattctttttcaactttgaa
aattctaaacctatgcagatagacaatctcaagcatacatagaaagaaac
aaaacttatcaagacacatcagatttctaaaaactgaagaacaaggaaaa
aaatctcacgcagacccacatgagattgatccactacagatgaatagaaa
tatcagggtcaagattttagcccatgtatcaacagaagcaagaaaagaga
gaagagggagatggactttttaatgtttcagggaaaaaatacaacctaga
attctaagctgaaggaaatatctcacacaacaaaataaagaaataaaggt
gttagtaacactgtcaaagcaccaatgaccaatcaccaaaaggcagattg
catggtaagaaaattacacagtagttcttcaagtatgaggaaaacagagc
aaagggaatccctgggaaacaatggaaaatgttttaaaacacatagaaga
ttataatgcctagctctccaaggcagaaaaaaatgattgtaaaggaaaat
acactataggtgttcctataccagaaggaagaagataatactcacaacca
aaggtactgtgacattaagatagatagggatttctttatggccagaagtg
actactcaatagagtgagtttacctgataaaattaagtgaagaaatatac
aattgtgagaaaagaaagcaatggaataatagttaaaaggtggagtatta
ccagctggcatattgaaatcagagaacactatcacttcatataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_155689992_155691079
seq2: B6Ng01-190K04.b_33_1123

seq1  GAATTCAAATTGAAAGGCAAGAAACTTCAAGAATTCATTAGGCAAGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTGAAAGGCAAGAAACTTCAAGAATTCATTAGGCAAGAGCA  50

seq1  GATGAAAAACCTTAAGAAGCAGAGGTGCCCTGCTACCCTTGCCAGAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAAACCTTAAGAAGCAGAGGTGCCCTGCTACCCTTGCCAGAGGAA  100

seq1  CCTGAGAAGGGCGATGTGAACTCAACACAGGGCTTCAGAGTCACTCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAAGGGCGATGTGAACTCAACACAGGGCTTCAGAGTCACTCAGAT  150

seq1  CCCACACTGGGAAAAAACATGCATTGGTTTAAGTAATGAATAAAACAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACTGGGAAAAAACATGCATTGGTTTAAGTAATGAATAAAACAAGC  200

seq1  ACAATAAACAAAATTTCAGTTTCATACTGTAATAAATGGCTGGAAATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAACAAAATTTCAGTTTCATACTGTAATAAATGGCTGGAAATGAG  250

seq1  AGACAATGGAAAGTTTGATGAGATGTTTACATATTCCTGGATGAATTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGGAAAGTTTGATGAGATGTTTACATATTCCTGGATGAATTCAA  300

seq1  TAGAAGAGACTTAGAGAAAACTTAGTTTCACTCTAAAGGTTAACAGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAGACTTAGAGAAAACTTAGTTTCACTCTAAAGGTTAACAGGACA  350

seq1  CACTCAGACCAACAGAGACAAGAGTAGAGCCTGCTGTGGAAATTCCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGACCAACAGAGACAAGAGTAGAGCCTGCTGTGGAAATTCCTTGT  400

seq1  CATGAGGGGGAGTCATGGGGTATTATCAATAGGAGAATACCAGCAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGGGGAGTCATGGGGTATTATCAATAGGAGAATACCAGCAAAAAT  450

seq1  TTGTCAAAGAAACCAGTGCCCCATCTAGAAGGAATCCCAGGCTCCAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAAGAAACCAGTGCCCCATCTAGAAGGAATCCCAGGCTCCAATAT  500

seq1  ATCATCAGCCATAGGAGCCTGACTTTAAACACACTCTGAGGAAAACATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAGCCATAGGAGCCTGACTTTAAACACACTCTGAGGAAAACATAA  550

seq1  CATGGTAGTCATTGCAAAGTAACTATAAAATATTCAAAGAAGCACAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTAGTCATTGCAAAGTAACTATAAAATATTCAAAGAAGCACAAAGC  600

seq1  AGACATTTCTGGTTCCTTTGGAGACTGTTGGGCCATGTAGTGTTTTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTCTGGTTCCTTTGGAGACTGTTGGGCCATGTAGTGTTTTTCTG  650

seq1  AAAGTTGTCCTATGAAAGGACGTTTTGCTGAGGCAGATGCTTGAGAGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGTCCTATGAAAGGACGTTTTGCTGAGGCAGATGCTTGAGAGGAC  700

seq1  ATGTGATGCTTGTAAAGAGTATGTGTAGAACCCAGCAAGCCATAAATGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATGCTTGTAAAGAGTATGTGTAGAACCCAGCAAGCCATAAATGAC  750

seq1  ACTCTTGTATTGGCTTGCTTTGCAGTGCTTTGCCAGTCTTCACCGATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGTATTGGCTTGCTTTGCAGTGCTTTGCCAGTCTTCACCGATCTT  800

seq1  TATTTGCCATGGCTTTGTAGAAAGAAAGAGCACCAAAGAACATCTTGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCCATGGCTTTGTAGAAAGAAAGAGCACCAAAGAACATCTTGTGG  850

seq1  TATTCCGGCTGCTTCCTGTCACTACTGCAGACTCATACCAATTTGGTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCGGCTGCTTCCTGTCACTACTGCAGACTCATACCAATTTGGTGGA  900

seq1  TCCTCTCGGTTTCTTCTGAATGGAGTCTCAGCTACTGAGTACTGTTTTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCGGTTTCTTCTGAATGGAGTCTCAGCTACTGAGTACTGTTTTGT  950

seq1  GTTTTCAGATTGGACTGCTGTTACTGATTCATGGTTGAAGTTTTGCACTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAGATTGGACTGCTGTTACTGATTCATGGTTGAAGTTTTGCACTG  1000

seq1  G-ATGGCTAATATCCTGACAATGAAGATTGGAATCACCCC--AAAGAACT  1047
      | ||||||||||||||||||||||||||||| ||||||||  |||| |||
seq2  GAATGGCTAATATCCTGACAATGAAGATTGG-ATCACCCCCAAAAGGACT  1049

seq1  AGTTATAAGCAGGTACAT-ATCCCCCTTGTCCTACTATCTTT  1088
      |||||||||||||||||| |||||||||||||||||||||||
seq2  AGTTATAAGCAGGTACATAATCCCCCTTGTCCTACTATCTTT  1091


seq1: chr3_155829107_155830246
seq2: B6Ng01-190K04.g_58_1203 (reverse)

seq1  TTTTATATGAAGTGGATAGTTGTTCTCTGATT--CATATGCAACCTGGTA  48
      ||||||||||||| ||||| ||||||||||||   |||||| | ||||||
seq2  TTTTATATGAAGT-GATAG-TGTTCTCTGATTTCAATATGCCAGCTGGTA  48

seq1  ATACTC--ACTTTTAACTATTATTCCATTTGCTTTC-TTTCTCACAATTG  95
      ||||||   |||||||||||||||||| |||||||| |||||||||||||
seq2  ATACTCCACCTTTTAACTATTATTCCA-TTGCTTTCTTTTCTCACAATTG  97

seq1  TATATTTCTTCACTTAATTTTATCAGGTAAAACTCACTCTA-TGAGTAGT  144
      |||||||||||||||||||||||||||| |||||||||||| ||||||||
seq2  TATATTTCTTCACTTAATTTTATCAGGT-AAACTCACTCTATTGAGTAGT  146

seq1  CACTTCTGGCCATAAAGAAAT-CCTATCTATCTTAATGTCACAGTACCTT  193
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CACTTCTGGCCATAAAGAAATCCCTATCTATCTTAATGTCACAGTACCTT  196

seq1  TGGTTGTGAGTA-TATCTTCTTCCTTCTGGTATAGGAACACCTATAGTGT  242
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTGAGTATTATCTTCTTCCTTCTGGTATAGGAACACCTATAGTGT  246

seq1  ATTT--CCTTACAATCATTTTTTTCTGCCTTGGAGAGCTAGGCATTATAA  290
      ||||  | ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTTTACAATCATTTTTTTCTGCCTTGGAGAGCTAGGCATTATAA  296

seq1  TCTTCTATGTGTTTTAAAACATTTTCCATTGTTTCCCAGGGATTCCCTTT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTATGTGTTTTAAAACATTTTCCATTGTTTCCCAGGGATTCCCTTT  346

seq1  GCTCTGTTTTCCTCATACTTGAAGAACTACTGTGTAATTTTCTTACCATG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTTTTCCTCATACTTGAAGAACTACTGTGTAATTTTCTTACCATG  396

seq1  CAATCTGCCTTTTGGTGATTGGTCATTGGTGCTTTGACAGTGTTACTAAC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGCCTTTTGGTGATTGGTCATTGGTGCTTTGACAGTGTTACTAAC  446

seq1  ACCTTTATTTCTTTATTTTGTTGTGTGAGATATTTCCTTCAGCTTAGAAT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTATTTCTTTATTTTGTTGTGTGAGATATTTCCTTCAGCTTAGAAT  496

seq1  TCTAGGTTGTATTTTTTCCCTGAAACATTAAAAAGTCCATCTCCCTCTTC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTTGTATTTTTTCCCTGAAACATTAAAAAGTCCATCTCCCTCTTC  546

seq1  TCTCTTTTCTTGCTTCTGTTGATACATGGGCTAAAATCTTGACCCTGATA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTCTTGCTTCTGTTGATACATGGGCTAAAATCTTGACCCTGATA  596

seq1  TTTCTATTCATCTGTAGTGGATCAATCTCATGTGGGTCTGCGTGAGATTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTCATCTGTAGTGGATCAATCTCATGTGGGTCTGCGTGAGATTT  646

seq1  TTTTCCTTGTTCTTCAGTTTTTAGAAATCTGATGTGTCTTGATAAGTTTT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTGTTCTTCAGTTTTTAGAAATCTGATGTGTCTTGATAAGTTTT  696

seq1  GTTTCTTTCTATGTATGCTTGAGATTGTCTATCTGCATAGGTTTAGAATT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTCTATGTATGCTTGAGATTGTCTATCTGCATAGGTTTAGAATT  746

seq1  TTCAAAGTTGAAAAAGAATGTTTGAGATCACATTAATTTTATTCTTTATT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGTTGAAAAAGAATGTTTGAGATCACATTAATTTTATTCTTTATT  796

seq1  GTGTGCTGACTTTTATATAGTTACTGTTACATGTTAATTTTTTCTTCACT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTGACTTTTATATAGTTACTGTTACATGTTAATTTTTTCTTCACT  846

seq1  GTGAAATTTACTTTTGATCTTATCCATAATCTTAGTTCATAAATCACATA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATTTACTTTTGATCTTATCCATAATCTTAGTTCATAAATCACATA  896

seq1  TGTATCCCAATACTGCTCATTAATATATTTAATTTTCCCTTAATGTCAGA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCCAATACTGCTCATTAATATATTTAATTTTCCCTTAATGTCAGA  946

seq1  ATTTTACTGATTCTATAAAGAAACAAAAACCCCAAAATTTGTATTCACTA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTGATTCTATAAAGAAACAAAAACCCCAAAATTTGTATTCACTA  996

seq1  ATCCTAGTTTCCATATCAGTTCTGGGTTAGCCATGTTTTTGTCTTTTCAC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGTTTCCATATCAGTTCTGGGTTAGCCATGTTTTTGTCTTTTCAC  1046

seq1  ATGACAGTTTGACTGCACACCAGACACTGAATTGTACCTTCCCTTGTGCT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGTTTGACTGCACACCAGACACTGAATTGTACCTTCCCTTGTGCT  1096

seq1  GGGCATTTTTACATTTCTACGAATTATGTCAGAGCTTATTTCTGGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTTTTACATTTCTACGAATTATGTCAGAGCTTATTTCTGGAATTC  1146


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