BAC Information

Click to search

BAC

Clone NameB6Ng01-191F16
Chromosome3 (Build37)
Map Location 114,029,860 - 114,224,271
singlet/doubletdoublet
Overlap geneLOC100043220
Upstream geneAmy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3, Col11a1
Downstream geneOlfm3, EG546808
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191F16.bB6Ng01-191F16.g
ACCGA014867GA014868
length1,1641,122
definitionB6Ng01-191F16.b B6Ng01-191F16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,029,860 - 114,031,020)(114,223,148 - 114,224,271)
sequence
gaattccttttatagttgataaaggttgtgatgtatttgttcaataatga
acagtcataagccttgaatatcagacaaaactaatgactttagaagacaa
gtgacaaaggcaaattttgatggatgcactatggtcaatttcttctagat
ttattctctgctggtttctgtctagtatcttataataaaaagggataagt
aagtaagaatgatgggaaggtctgtagatatgtaaagaatatgcatctag
gatttgagttcttgaaaaattaaaagcaataattgagaaggaacatgaaa
aagcactagggaagaaagcacagctgaataataaagggtaatttggtcat
ggatggcctctaggtttagaattgcacttttcctcgaaaagcagcatgga
attggcacatgaagagcatgagcagttgagtatcatagaaaatagagcaa
cagtcttgatttcagggagaagtcagagcatcacttaatcttccaatggg
ataagtgactacttacagtgctgttaccaattattaggagaaaatgacag
taaaaagaccagcagatgctactccgtgatttatgttctcaattccgtct
atttagttcacctgtcaccagtgagctattgtctcattcttctaaggcca
tgcaaaccagtggtagtttcacgtttttccctcctacctcttgaaaatga
agacgagcaaaatacataaaaattattctgagacttggagatatatggta
tgaagtttcaatctatgtcaaaatgtgttcttctggtttgatctgcatta
ctcgttttctcagaatcttcttgtgtcttttctcaacccaaggttataaa
actgttttctgagatcaacattgaatcaccaatgtttatgatttttcata
gagttgaatatctggtctctttgatggccaagtcagtgcatcttaccacc
tattgagtatttcagtatagatttattttccttgtcttttattaaagggt
gaaaaataaaacagttaacagtcatccttttacctcccccactgcctttt
cttttcacttattcccaccacctctacttagcaggaaatgtacttgttta
tttcaacgtgtggagtcatgtgcagtctcagctgcgttgcctttcctgac
gatctagtgataca

gaattcaacaattcagccatatctgtctgatcattttcttgttgggaaac
tattattacttcaatctcactgctcactatagatatgcctaagtcacgaa
tgtttaggatttatgtctttcatccacctttgccaggtttcttaactgga
taatacattcttgtgtggtcctggctatcctggaactcactctgtagacc
aggttggtcttgaactcgaaaatccttaaataagtattcaaactagacct
aaatgaaaatttctcacctttattggcatttattttcacatccattttct
accactaattttcatttgggtctttgctttcttcaatttacttagactga
ctaaatgtttttaaactcaattaacttttttttaaaaaagcaactacttt
attcattgatatttttgaattttttatgtttcattgatttcctctttatt
ttgataatttgttttcaatctgctgatttagctcacatttcttttttttt
taaactaataatttattacgagatagagggtgttgattatccagggcagt
catttaatatgaagcttgtgagcaaggcaaatttgtttgcccttctttag
tcctttgagtttgaagtacattctctggatttgtagaaaaagcgtgtaac
tgtttccatttcccatattatctgtttcttttcttttctccacatgtact
agagaatcggtttcagttctttcttatttggtacaacagtgaagacccta
ggaggtaggagcttgtagaaatcaagtgttcactggttgtgaaattcaga
attcattgtcacgtaagaagaaaactatgacccagagaggcagctatgac
tactgttaatcagcaaattaatggcactgaacaccaggctattatttaat
gtagtcaattttcaggcataagtcttgctgtttgctacagaggatgagat
ttcctttcaccatcaaccttcacagtgtaaacagagcctggtaaacatca
cagtgtgactctgtcaaatactcttctttttaaaactgcttcaggagact
gtctctcatccaagtgccagaggtggtgctatccccattactatgaatct
tctattttaagggcctactact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_114029860_114031020
seq2: B6Ng01-191F16.b_46_1209

seq1  GAATTCCTTTTATAGTTGATAAAGGTTGTGATGTATTTGTTCAATAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTATAGTTGATAAAGGTTGTGATGTATTTGTTCAATAATGA  50

seq1  ACAGTCATAAGCCTTGAATATCAGACAAAACTAATGACTTTAGAAGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCATAAGCCTTGAATATCAGACAAAACTAATGACTTTAGAAGACAA  100

seq1  GTGACAAAGGCAAATTTTGATGGATGCACTATGGTCAATTTCTTCTAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAAGGCAAATTTTGATGGATGCACTATGGTCAATTTCTTCTAGAT  150

seq1  TTATTCTCTGCTGGTTTCTGTCTAGTATCTTATAATAAAAAGGGATAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTCTGCTGGTTTCTGTCTAGTATCTTATAATAAAAAGGGATAAGT  200

seq1  AAGTAAGAATGATGGGAAGGTCTGTAGATATGTAAAGAATATGCATCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGAATGATGGGAAGGTCTGTAGATATGTAAAGAATATGCATCTAG  250

seq1  GATTTGAGTTCTTGAAAAATTAAAAGCAATAATTGAGAAGGAACATGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAGTTCTTGAAAAATTAAAAGCAATAATTGAGAAGGAACATGAAA  300

seq1  AAGCACTAGGGAAGAAAGCACAGCTGAATAATAAAGGGTAATTTGGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTAGGGAAGAAAGCACAGCTGAATAATAAAGGGTAATTTGGTCAT  350

seq1  GGATGGCCTCTAGGTTTAGAATTGCACTTTTCCTCGAAAAGCAGCATGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCCTCTAGGTTTAGAATTGCACTTTTCCTCGAAAAGCAGCATGGA  400

seq1  ATTGGCACATGAAGAGCATGAGCAGTTGAGTATCATAGAAAATAGAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCACATGAAGAGCATGAGCAGTTGAGTATCATAGAAAATAGAGCAA  450

seq1  CAGTCTTGATTTCAGGGAGAAGTCAGAGCATCACTTAATCTTCCAATGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTGATTTCAGGGAGAAGTCAGAGCATCACTTAATCTTCCAATGGG  500

seq1  ATAAGTGACTACTTACAGTGCTGTTACCAATTATTAGGAGAAAATGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGACTACTTACAGTGCTGTTACCAATTATTAGGAGAAAATGACAG  550

seq1  TAAAAAGACCAGCAGATGCTACTCCGTGATTTATGTTCTCAATTCCGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGACCAGCAGATGCTACTCCGTGATTTATGTTCTCAATTCCGTCT  600

seq1  ATTTAGTTCACCTGTCACCAGTGAGCTATTGTCTCATTCTTCTAAGGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTCACCTGTCACCAGTGAGCTATTGTCTCATTCTTCTAAGGCCA  650

seq1  TGCAAACCAGTGGTAGTTTCACGTTTTTCCCTCCTACCTCTTGAAAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACCAGTGGTAGTTTCACGTTTTTCCCTCCTACCTCTTGAAAATGA  700

seq1  AGACGAGCAAAATACATAAAAATTATTCTGAGACTTGGAGATATATGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGAGCAAAATACATAAAAATTATTCTGAGACTTGGAGATATATGGTA  750

seq1  TGAAGTTTCAATCTATGTCAAAATGTGTTCTTCTGGTTTGATCTGCATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTTCAATCTATGTCAAAATGTGTTCTTCTGGTTTGATCTGCATTA  800

seq1  CTCGTTTTCTCAGAATCTTCTTGTGTCTTTTCTCAACCCAAGGTTATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTTTCTCAGAATCTTCTTGTGTCTTTTCTCAACCCAAGGTTATAAA  850

seq1  ACTG-TTTCTGAGATCAACATTGAATCACCAATGTTTATGATTTTTCATA  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTCTGAGATCAACATTGAATCACCAATGTTTATGATTTTTCATA  900

seq1  GAGTTGAATATCTGGTCTCTTTGATGGCCAAGTCAGTGCATCTTACCACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAATATCTGGTCTCTTTGATGGCCAAGTCAGTGCATCTTACCACC  950

seq1  TATTGAGTATTTCAGTATAGATTTATTTTCCTTGTCTTTTAATTAAGGGT  999
      ||||||||||||||||||||||||||||||||||||||||| | ||||||
seq2  TATTGAGTATTTCAGTATAGATTTATTTTCCTTGTCTTTTATTAAAGGGT  1000

seq1  G-AAAATAAAACAGTTAACAGTCATCC-TTTAC--TCCCCACTGCCTTT-  1044
      | ||||||||||||||||||||||||| |||||   ||||||||||||| 
seq2  GAAAAATAAAACAGTTAACAGTCATCCTTTTACCTCCCCCACTGCCTTTT  1050

seq1  -CTTTCAC-TATTCCCAACCACTCTAACTAGCA-GAAATGTTACTTGTTT  1091
        |||||| |||||||| |  |||||  ||||| |||||| |||||||||
seq2  CTTTTCACTTATTCCCACCACCTCTACTTAGCAGGAAATG-TACTTGTTT  1099

seq1  A-TTCAACGTGTGGAGTCATGTGCAGTTCTCAAAGCCTGC-TTGCCTTCC  1139
      | |||||||||||||||||||||||| |||||    |||| ||||||| |
seq2  ATTTCAACGTGTGGAGTCATGTGCAG-TCTCA---GCTGCGTTGCCTTTC  1145

seq1  CTGACAGATTCTAGTGAATACA  1161
      ||||| || ||||||| |||||
seq2  CTGAC-GA-TCTAGTG-ATACA  1164


seq1: chr3_114223148_114224271
seq2: B6Ng01-191F16.g_64_1185 (reverse)

seq1  AGTAG-AGGCCC-TAAAATAGAAGTATTCATAAGTAATGGGGGATAAGCA  48
      ||||| |||||| ||||||||||| |||||| |||||| |||||| ||||
seq2  AGTAGTAGGCCCTTAAAATAGAAG-ATTCAT-AGTAAT-GGGGAT-AGCA  46

seq1  -CACCTCTGCCAACTTTGAATGAGAGACAGTCTCCTGAAGCAGTTTTTAA  97
       |||||||| ||   ||| |||||||||||||||||||||||| ||||||
seq2  CCACCTCTGGCA--CTTGGATGAGAGACAGTCTCCTGAAGCAG-TTTTAA  93

seq1  AAAGAAGAGTATTTGACAGAGTCACACTGTGATGTTTACCAGGCTCTGTT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAGTATTTGACAGAGTCACACTGTGATGTTTACCAGGCTCTGTT  143

seq1  TACACTGTGAAGG-TGATGGTGAAAGGAAATCTCATCCTCTGTAGCAAAC  196
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TACACTGTGAAGGTTGATGGTGAAAGGAAATCTCATCCTCTGTAGCAAAC  193

seq1  AGCAAGACTTATGCCTG-AAATTGACTACATTAAATAATAGCCTGGTGTT  245
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCAAGACTTATGCCTGAAAATTGACTACATTAAATAATAGCCTGGTGTT  243

seq1  CAGTGCCATTAATTTGCTGATTAACAGTAGTCATAGCTGCCTCTCTGGGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCATTAATTTGCTGATTAACAGTAGTCATAGCTGCCTCTCTGGGT  293

seq1  CATAGTTTTCTTCTTACGTGACAATGAATTCTGAATTTCACAACCAGTGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTTTCTTCTTACGTGACAATGAATTCTGAATTTCACAACCAGTGA  343

seq1  ACACTTGATTTCTACAAGCTCCTACCTCCTAGGGTCTTCACTGTTGTACC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGATTTCTACAAGCTCCTACCTCCTAGGGTCTTCACTGTTGTACC  393

seq1  AAATAAGAAAGAACTGAAACCGATTCTCTAGTACATGTGGAGAAAAGAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAAAGAACTGAAACCGATTCTCTAGTACATGTGGAGAAAAGAAA  443

seq1  AGAAACAGATAATATGGGAAATGGAAACAGTTACACGCTTTTTCTACAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGATAATATGGGAAATGGAAACAGTTACACGCTTTTTCTACAAA  493

seq1  TCCAGAGAATGTACTTCAAACTCAAAGGACTAAAGAAGGGCAAACAAATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGAATGTACTTCAAACTCAAAGGACTAAAGAAGGGCAAACAAATT  543

seq1  TGCCTTGCTCACAAGCTTCATATTAAATGACTGCCCTGGATAATCAACAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGCTCACAAGCTTCATATTAAATGACTGCCCTGGATAATCAACAC  593

seq1  CCTCTATCTCGTAATAAATTATTAGTTTAAAAAAAAAAGAAATGTGAGCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATCTCGTAATAAATTATTAGTTTAAAAAAAAAAGAAATGTGAGCT  643

seq1  AAATCAGCAGATTGAAAACAAATTATCAAAATAAAGAGGAAATCAATGAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGCAGATTGAAAACAAATTATCAAAATAAAGAGGAAATCAATGAA  693

seq1  ACATAAAAAATTCAAAAATATCAATGAATAAAGTAGTTGCTTTTTTAAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAAAATTCAAAAATATCAATGAATAAAGTAGTTGCTTTTTTAAAA  743

seq1  AAAAGTTAATTGAGTTTAAAAACATTTAGTCAGTCTAAGTAAATTGAAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTAATTGAGTTTAAAAACATTTAGTCAGTCTAAGTAAATTGAAGA  793

seq1  AAGCAAAGACCCAAATGAAAATTAGTGGTAGAAAATGGATGTGAAAATAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGACCCAAATGAAAATTAGTGGTAGAAAATGGATGTGAAAATAA  843

seq1  ATGCCAATAAAGGTGAGAAATTTTCATTTAGGTCTAGTTTGAATACTTAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAATAAAGGTGAGAAATTTTCATTTAGGTCTAGTTTGAATACTTAT  893

seq1  TTAAGGATTTTCGAGTTCAAGACCAACCTGGTCTACAGAGTGAGTTCCAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGATTTTCGAGTTCAAGACCAACCTGGTCTACAGAGTGAGTTCCAG  943

seq1  GATAGCCAGGACCACACAAGAATGTATTATCCAGTTAAGAAACCTGGCAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCCAGGACCACACAAGAATGTATTATCCAGTTAAGAAACCTGGCAA  993

seq1  AGGTGGATGAAAGACATAAATCCTAAACATTCGTGACTTAGGCATATCTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGATGAAAGACATAAATCCTAAACATTCGTGACTTAGGCATATCTA  1043

seq1  TAGTGAGCAGTGAGATTGAAGTAATAATAGTTTCCCAACAAGAAAATGAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGCAGTGAGATTGAAGTAATAATAGTTTCCCAACAAGAAAATGAT  1093

seq1  CAGACAGATATGGCTGAATTGTTGAATTC  1124
      |||||||||||||||||||||||||||||
seq2  CAGACAGATATGGCTGAATTGTTGAATTC  1122


| Home | SequenceCutter | Blast | Download |