MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-191I09
Chromosome	3 (Build37)
Map Location	84,898,184 - 85,078,978
singlet/doublet	doublet
Overlap gene	none
Upstream gene	Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
Downstream gene	LOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201, Lrba
Link	Open Mouse BAC browser

Click to get alignment info.

name	Mnd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76915 MGI:1924165
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trim2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:80890 MGI:1933163
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG624713 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:624713 MGI:3648757
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 180 ESTs, 6 Proteins

name	6330505N24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229474 MGI:2684972
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Arfip1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:99889 MGI:1277120
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG667788 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667788 MGI:3645282
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	EG627369 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:627369 MGI:3645270
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	Tigd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:403175 MGI:2685264
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem154 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320782 MGI:2444725
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC624889 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:624889
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 208 ESTs, 5 Proteins pseudo : _no_value

name	Fbxw7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50754 MGI:1354695
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dear1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:654362 MGI:3614654
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042237 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042237
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	LOC100042125 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042125
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Pet112l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229487 MGI:2442496
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9930021J17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229488 MGI:2444746
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Glt28d2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320302 MGI:2443773
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042265 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042265
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 136 ESTs, 4 Proteins

name	Gm1019 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:368202 MGI:2685865
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sh3d19 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27059 MGI:1350923
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rps3a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20091 MGI:1202063
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC634201 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:634201
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Lrba (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:80877 MGI:1933162
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Mnd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142354297 GeneID:76915 MGI:1924165
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : meiotic nuclear divisions 1 homolog (S. cerevisiae) transcript_id : NM_029797.2

name	Trim2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:14010848 GeneID:80890 MGI:1933163
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tripartite motif protein 2 transcript_id : NM_030706.1

name	EG624713 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369598 GeneID:624713 MGI:3648757
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 180 ESTs, 6 Proteins product : predicted gene, EG624713 transcript_id : XM_890670.2

name	6330505N24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801767 GeneID:229474 MGI:2684972
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 6330505N24 gene transcript_id : NM_001033301.2

name	Arfip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487361 GeneID:99889 MGI:1277120
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ADP-ribosylation factor interacting protein 1 transcript_id : NM_001081093.1

name	EG627369 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369686 GeneID:627369 MGI:3645270
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : predicted gene, EG627369 transcript_id : XM_899893.2

name	Tigd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113866000 GeneID:403175 MGI:2685264
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tigger transposable element derived 4 transcript_id : NM_207278.2

name	Tmem154 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31343187 GeneID:320782 MGI:2444725
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 154 transcript_id : NM_177260.2

name	Fbxw7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21218433 GeneID:50754 MGI:1354695
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : F-box and WD-40 domain protein 7, archipelago homolog (Drosophila) transcript_id : NM_080428.2

name	Dear1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94818704 GeneID:654362 MGI:3614654
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dual endothelin 1/angiotensin II receptor 1 homolog (rat) transcript_id : NM_001040461.1

name	LOC100042237 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251245 GeneID:100042237
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : hypothetical protein LOC100042237 transcript_id : XM_001477542.1

name	LOC100042125 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251240 GeneID:100042125
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042125 transcript_id : XM_001477612.1

name	Pet112l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385128 GeneID:229487 MGI:2442496
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PET112-like (yeast) transcript_id : NM_144896.3

name	9930021J17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802502 GeneID:229488 MGI:2444746
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9930021J17 gene transcript_id : NM_172682.2

name	Glt28d2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802888 GeneID:320302 MGI:2443773
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycosyltransferase 28 domain containing 2 transcript_id : NM_177130.2

name	LOC100042265 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251249 GeneID:100042265
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 43 ESTs, 2 Proteins product : similar to hypoxia induced gene 1, transcript variant 1 transcript_id : XM_001477636.1

name	LOC100042265 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251251 GeneID:100042265
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 136 ESTs, 3 Proteins product : similar to hypoxia induced gene 1, transcript variant 2 transcript_id : XM_001477646.1

name	Gm1019 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:48717491 GeneID:368202 MGI:2685865
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 1019, (NCBI) transcript_id : NM_001001650.1

name	Sh3d19 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126723607 GeneID:27059 MGI:1350923
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SH3 domain protein D19 transcript_id : NM_001082414.1

name	Rps3a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802659 GeneID:20091 MGI:1202063
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein S3a transcript_id : NM_016959.3

name	LOC634201 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251242 GeneID:634201
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical LOC634201 transcript_id : XM_001477638.1

name	Lrba (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117956398 GeneID:80877 MGI:1933162
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LPS-responsive beige-like anchor transcript_id : NM_030695.2

name	Lrba (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117956396 GeneID:80877 MGI:1933162
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LPS-responsive beige-like anchor transcript_id : NM_001077688.1

name	Lrba (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117956394 GeneID:80877 MGI:1933162
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LPS-responsive beige-like anchor transcript_id : NM_001077687.1

name	Mnd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37591185 GeneID:76915 MGI:1924165
definition	GO_function : GO:0005515 - protein binding [Evidence IPI] codon_start : 1 exception : mismatches in translation product : GAJ protein protein_id : NP_084073.1

name	Trim2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:14010849 CCDS:CCDS17437.1 GeneID:80890 MGI:1933163
definition	GO_component : GO:0005737 - cytoplasm [Evidence NAS] [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0017022 - myosin binding [Evidence NAS]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] [Evidence NAS] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : neural activity-related ring finger protein product : tripartite motif protein TRIM2 protein_id : NP_109631.1

name	EG624713 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82890043 GeneID:624713 MGI:3648757
definition	codon_start : 1 product : similar to ribosomal protein L36a protein_id : XP_895763.1

name	6330505N24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677486 CCDS:CCDS17438.1 GeneID:229474 MGI:2684972
definition	GO_function : GO:0003779 - actin binding [Evidence IEA] GO_process : GO:0030036 - actin cytoskeleton organization and biogenesis [Evidence IEA]; GO:0016043 - cell organization and biogenesis [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC229474 protein_id : NP_001028473.1

name	Arfip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487362 GeneID:99889 MGI:1277120
definition	GO_component : GO:0005829 - cytosol [Evidence ISS]; GO:0000139 - Golgi membrane [Evidence ISS] GO_function : GO:0042802 - identical protein binding [Evidence IPI] GO_process : GO:0006886 - intracellular protein transport [Evidence ISS]; GO:0050708 - regulation of protein secretion [Evidence ISS] codon_start : 1 product : ADP-ribosylation factor interacting protein 1 protein_id : NP_001074562.1

name	EG627369 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82890248 GeneID:627369 MGI:3645270
definition	codon_start : 1 product : hypothetical protein protein_id : XP_904986.1

name	Tigd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46402305 CCDS:CCDS17439.1 GeneID:403175 MGI:2685264
definition	GO_component : GO:0000775 - chromosome, pericentric region [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0030001 - metal ion transport [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA] codon_start : 1 product : tigger transposable element derived 4 protein_id : NP_997161.1

name	Tmem154 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893325 GeneID:320782 MGI:2444725
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC320782 protein_id : NP_796234.1

name	Fbxw7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21218434 CCDS:CCDS17440.1 GeneID:50754 MGI:1354695
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS]; GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0005634 - nucleus [Evidence TAS] [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence ISS] [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0007219 - Notch signaling pathway [Evidence IDA]; GO:0016567 - protein ubiquitination [Evidence ISS]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : F-box-WD40 repeat protein 6; f-box only protein 30 product : F-box and WD-40 domain protein 7, archipelago homolog protein_id : NP_536353.2

name	Dear1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94818705 GeneID:654362 MGI:3614654
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy product : dual endothelin 1/angiotensin II receptor 1 homolog protein_id : NP_001035551.1

name	LOC100042237 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251246 GeneID:100042237
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477592.1

name	LOC100042125 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251241 GeneID:100042125
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477662.1

name	Pet112l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450279 CCDS:CCDS17441.1 GeneID:229487 MGI:2442496
definition	GO_function : GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : PET112-like protein_id : NP_659145.1

name	9930021J17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542059 CCDS:CCDS17442.1 GeneID:229488 MGI:2444746
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0005529 - sugar binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : hypothetical protein LOC229488 protein_id : NP_766270.1

name	Glt28d2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28893089 CCDS:CCDS17443.1 GeneID:320302 MGI:2443773
definition	GO_function : GO:0030246 - carbohydrate binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0030259 - lipid glycosylation [Evidence IEA] codon_start : 1 exception : mismatches in translation product : glycosyltransferase 28 domain containing 1-like protein_id : NP_796104.1

name	LOC100042265 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251250 GeneID:100042265
definition	codon_start : 1 product : similar to hypoxia induced gene 1 isoform 1 protein_id : XP_001477686.1

name	LOC100042265 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251252 GeneID:100042265
definition	codon_start : 1 product : similar to hypoxia induced gene 1 isoform 2 protein_id : XP_001477696.1

name	Gm1019 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:48717492 CCDS:CCDS17444.1 GeneID:368202 MGI:2685865
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 function : serine protease product : epidermis-specific serine protease-like protein_id : NP_001001650.1

name	Sh3d19 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126723608 GeneID:27059 MGI:1350923
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation note : SH3 domain containing protein D 19 product : SH3 domain protein D19 protein_id : NP_001075883.1

name	Rps3a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980669 CCDS:CCDS17446.1 GeneID:20091 MGI:1202063
definition	GO_component : GO:0005829 - cytosol [Evidence IDA]; GO:0005830 - cytosolic ribosome (sensu Eukaryota) [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA] [Evidence NAS] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0003735 - structural constituent of ribosome [Evidence IEA] GO_process : GO:0006917 - induction of apoptosis [Evidence ISS]; GO:0006412 - protein biosynthesis [Evidence ISS] [Evidence IEA]; GO:0007046 - ribosome biogenesis [Evidence IEA]; GO:0006413 - translational initiation [Evidence ISS] codon_start : 1 exception : mismatches in translation product : ribosomal protein S3a protein_id : NP_058655.2

name	LOC634201 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251243 GeneID:634201
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477688.1

name	Lrba (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117956399 GeneID:80877 MGI:1933162
definition	GO_component : GO:0016023 - cytoplasmic membrane-bound vesicle [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0051018 - protein kinase A binding [Evidence ISS] GO_process : GO:0016197 - endosome transport [Evidence TAS]; GO:0008104 - protein localization [Evidence ISS]; GO:0007165 - signal transduction [Evidence TAS] codon_start : 1 note : isoform alpha is encoded by transcript variant 1 product : LPS-responsive beige-like anchor isoform alpha protein_id : NP_109620.2

name	Lrba (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117956397 GeneID:80877 MGI:1933162
definition	GO_component : GO:0016023 - cytoplasmic membrane-bound vesicle [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0051018 - protein kinase A binding [Evidence ISS] GO_process : GO:0016197 - endosome transport [Evidence TAS]; GO:0008104 - protein localization [Evidence ISS]; GO:0007165 - signal transduction [Evidence TAS] codon_start : 1 note : isoform beta is encoded by transcript variant 2 product : LPS-responsive beige-like anchor isoform beta protein_id : NP_001071156.1

name	Lrba (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117956395 GeneID:80877 MGI:1933162
definition	GO_component : GO:0016023 - cytoplasmic membrane-bound vesicle [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0051018 - protein kinase A binding [Evidence ISS] GO_process : GO:0016197 - endosome transport [Evidence TAS]; GO:0008104 - protein localization [Evidence ISS]; GO:0007165 - signal transduction [Evidence TAS] codon_start : 1 note : isoform gamma is encoded by transcript variant 3 product : LPS-responsive beige-like anchor isoform gamma protein_id : NP_001071155.1

name	EG667788 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667788
definition	number : 1 pseudo : _no_value

name	LOC624889 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251244 GeneID:624889
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 208 ESTs, 5 Proteins product : similar to suppressor of initiator codon mutations, related sequence 1 pseudo : _no_value transcript_id : XR_033260.1

clone name	MSMg01-479C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460N17
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-266M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-301I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-183G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-061O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120D18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-049D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-068K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-187K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-232L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-201M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-192A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261F12
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-355B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542I16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-275P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453H02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-480C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-322E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095F23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-212N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468P09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-306J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267B24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-299E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-070N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200M13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329F14
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-191I09.b	B6Ng01-191I09.g
ACC	GA014993	GA014994
length	744	1,175
definition	B6Ng01-191I09.b	B6Ng01-191I09.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(84,898,184 - 84,898,927)	(85,077,832 - 85,078,978)
sequence	gaattccaggctatgatctatcattgcaggggagtcgcagaatcacgaac ttgagacagctagtctcagtacactcatggtcaagggcagagagaaacaa aaattgcctgcttgcttactttgctagttttctttgcccacacagttcag agcctggcctagggaatgatgcctctcacagtgggctaggtcatcctaca ttcatctcctgcagacatgctcaacccgatctagataatttctcattaat attctacccattctccttttaaagacaggatctcatagctcagattgacc tcaaaattgctatgaaactaagaatgaccctgaattccagatcgccctgc ttctggctcccaagtgctggggttacaggcatgtgccaccacactggctc tgcactgctgagtccaaacacataaaatcattctgggaagatgagaaagg aagaaagaggccctggaagagagtgatacagtaagaagaatgcttcggat aaggacggaggtggatgtagtccttgcttgggcctagacaaaaggcaaaa ggccttcagggagggaggtaatgaattccacaaacaaggaagagaaatga ctttaagtaaggattaaataggaagaggaactcatgacctatattgattg ttccacaaaataactcctatttatagttgattaatttccataattgtaat tgtccctagtggtgagtagacagtaccaccaaaaagtgtgtgtg	gaattccaagtatggcgttttggagaaaatgttttgttatttgccccaga tgaccccaccccacgttagggagccggctgcaaaggagaagtcccaaata ctgagcttcacacagcctttgatgtgggctcagaagattccgtggactgc gccaggctctcttttggggagagacgtgccaggaatgttggcgtgccccg tgctgcgattggaagttgctggttttgctggaagtgcgtccagtgcactg tttcccaccatagagaccatttacctttcccacttccaagccagcaccgg tcctagcaataaagtcccataaataccagcagggtagcagagactgtggc cattactaatatatttttcctgccctgtttgctggaggagagaaattctc agaagccatgcatatattttacgtaaaataatagctgagctgccaagggt tttaatgatatgacttcatcatggaattatgggctttttggtttattctg ctgtcagaaccccaagacaaaaattaattcatgtaactggttccaattca agtcctattttgtatcctcccttatgggtgaactcagctactctgattgc ccaggcataaatggttggggtgtaagttgcagaaaagcctgccttggtgt attcattagctctagaatcaattcattcacgaggggccatatactgtggt caaaaacatgcgcatttgggtcaaagggctggtatttatttgaatcctgg gttggcaaagccgagaagactaaataaattcttatctctcacctgtagta gttggctattggcacccggctctcagggatgttggggaaaaaaatgtgtt tacagctgatgggatggttgagctgaatacccataaaaggtccgtcccag gtaccaggattggaaccggagatggttcctgagccctttggaaggtccag gaatcttaagccaccttccatctagaagcttcttctttttagcccccaat atcctcagatggcctcccccattattgtgaatttgtacctccttcccagt cccttacctgtcctgggaatctcaggatcccccttgtgagaattctctga accttagcacagctgccctgttgccaaacggatttacggtaccgaaacaa gagccatactgcaattccaggcaag
quality values	Open. Hide. 58 26 28 25 58 58 34 14 62 62 62 62 50 47 62 18 24 54 62 62 47 47 39 54 62 62 47 44 62 62 59 32 39 18 24 28 12 18 17 13 28 23 19 19 17 24 23 32 50 62 62 62 62 59 59 59 59 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 59 59 56 59 50 34 40 34 28 34 49 38 34 48 48 54 30 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 54 43 62 62 62 62 62 62 62 62 62 62 62 62 54 54 54 54 54 62 59 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 59 59 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 51 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 56 62 47 62 62 62 62 54 47 62 62 62 56 62 62 62 62 62 62 62 62 62 47 62 62 62 62 62 54 62 62 62 62 62 54 62 49 54 62 62 47 35 62 62 62 62 47 41 62 62 62 52 62 62 52 58 58 58 58 58 58 58 58 58 54 58 58 54 52 58 47 38 58 58 58 54 49 34 58 58 58 58 58 58 26 58 58 58 58 52 41 58 58 36 34 58 58 54 41 58 52 58 54 49 58 58 54 47 58 52 54 50 52 52 58 58 51 47 47 47 58 58 49 47 58 37 58 58 37 45 58 49 39 58 58 52 50 51 50 51 50 47 45 58 38 28 51 50 58 58 51 58 53 44 58 58 50 58 49 58 58 50 51 51 50 42 50 58 37 31 58 51 51 58 52 41 58 58 41 31 50 53 32 49 39 42 41 49 39 58 58 47 52 38 54 54 54 54 58 40 46 37 58 49 50 49 54 54 53 51 54 49 49 39 41 33 29 54 40 45 37 42 53 54 52 42 52 54 32 38 39 42 46 49 40 49 54 54 49 49 53 32 54 54 29 50 51 42 42 42 39 35 30 34 44 31 37 44 42 27 42 31 15 54 54 54 38 25 35 46 38 53 42 39 30 21	Open. Hide. 62 47 56 36 62 62 39 19 62 62 47 51 13 15 10 19 8 15 21 21 20 21 22 27 28 45 34 56 62 59 59 59 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 40 54 62 62 59 62 62 62 54 56 62 50 50 48 34 34 23 28 28 48 43 54 48 54 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 54 62 62 46 62 62 59 59 59 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 59 62 62 54 62 62 62 62 62 62 62 62 62 62 59 62 62 59 59 62 62 62 62 62 62 59 62 59 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 46 62 50 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 62 62 62 56 56 59 50 48 48 56 62 62 62 62 62 62 62 62 62 59 59 62 56 56 43 62 62 62 62 62 59 62 59 62 62 59 62 59 59 59 62 62 62 62 54 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 44 43 56 36 43 28 38 34 50 47 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 49 45 59 51 59 62 62 62 62 62 59 62 59 62 62 62 62 59 62 62 62 47 49 56 62 62 62 62 62 62 62 42 47 62 47 62 62 62 56 62 56 62 62 62 62 62 42 62 62 54 47 62 62 62 62 43 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 56 62 62 62 62 62 62 62 62 62 62 56 43 62 56 56 62 62 47 43 62 62 62 47 37 62 62 62 47 47 62 62 46 56 62 62 62 62 62 62 54 62 62 62 62 62 52 46 62 62 42 62 62 62 62 54 54 62 62 62 62 47 62 62 62 62 62 54 54 52 54 54 46 39 52 49 45 37 38 54 52 54 54 45 45 58 58 54 47 49 52 33 29 52 52 42 58 58 54 54 54 41 22 38 58 39 58 36 33 38 44 52 52 54 52 58 54 52 58 58 54 52 52 58 52 58 46 58 37 31 58 45 58 54 54 54 54 39 58 54 52 58 27 46 47 37 50 46 58 51 30 24 20 17 39 21 43 32 38 44 23 37 26 14 8 37 41 50 50 24 20 50 50 52 52 48 42 47 58 49 32 51 58 58 41 58 40 58 9 58 58 44 33 43 32 49 52 58 49 47 40 50 39 49 42 28 41 53 51 49 49 54 40 30 49 51 22 19 44 33 58 40 49 50 42 35 20 30 27 58 32 25 49 32 33 33 34 22 10 21 30 51 52 43 34 53 35 22 47 49 39 30 43 50 51 54 12 9 31 49 41 29 53 54 47 22 21 26 14 34 12 25 32 30 41 18 42 29 54 19 47 40 50 9 42 33 41 26 40 27 39 39 37 45 53 40 27 30 40 29 40 30 34 26 26 35 15 40 17 17 40 14 34 28 46 23 28 30 32 17 33 42 40 11 27 32 29 28 34 20 18 9 15 10 15 12 22 13 31 25 40 11 10 14 6 6 17 11 47 9 11 32 32 22 7 40 28 21 35 21 28 32 29 23 53 22 51 40 17 19 21 44 37 30 30 28 51 19 43 31 21 31 31 22 31 31 37 30 23 30 38 45 33 27 12 12 6 17 34 19 18 34 27 7 6 6 7 8 8 13 25 15 13 23 22 8 16 27 34 10 13 20 13 24 28 42 9 22 16 9 20 26 29 36 32 22 22 12 6 23 46 31 10 46 46 13 17 32 18 13 39 8 14 15 9 13 30 25 31 18 31 31 23 21 18 7 24 10 6 9 7 23 31 35 36 20 15 14 10 26 33 24 38 10 31 31 14 10 8 5 10 24 38 44 32 12 23 14 31 44 41 36 35 6 25 5 8 19 14 22 25 11 10 8 31 5 5 9 13 8 12 5 19 6 5 6 13 10 9 9 5 6 14 5 8 8 20 13 32 11 18 14 17 8 9 5 5 7 20 28 12 33 20 7 6 4 8 39 37 10 9 15 25 24 13 10 5 6 8 21 19 30 12 13 6 5 11 14 14 7 4 6 19 3 8 24 38 33 24 7 6 4 5 11 6 4 10 9 24 15 7 8 10 6 7 6 13 7 17 10 5 9 4 4 5 5 12 7 7 6 7 11 28 13 11 14 10 30 8 6 5 15 20 14 8 8 6 21 10 16 17 3 1 3 3 1 3 4 3 1 3 13 4 4 6 9 6 18 5 4 18 5 7 4 7 8 18 4 3 6 13 12 13 3 4 4 5 8 4 4 9

Alignment Information

BAC End 1

BAC End 2

seq1: chr3_84898184_84898927
seq2: B6Ng01-191I09.b_44_787

seq1  GAATTCCAGGCTATGATCTATCATTGCAGGGGAGTCGCAGAATCACGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTATGATCTATCATTGCAGGGGAGTCGCAGAATCACGAAC  50

seq1  TTGAGACAGCTAGTCTCAGTACACTCATGGTCAAGGGCAGAGAGAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAGCTAGTCTCAGTACACTCATGGTCAAGGGCAGAGAGAAACAA  100

seq1  AAATTGCCTGCTTGCTTACTTTGCTAGTTTTCTTTGCCCACACAGTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCCTGCTTGCTTACTTTGCTAGTTTTCTTTGCCCACACAGTTCAG  150

seq1  AGCCTGGCCTAGGGAATGATGCCTCTCACAGTGGGCTAGGTCATCCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGCCTAGGGAATGATGCCTCTCACAGTGGGCTAGGTCATCCTACA  200

seq1  TTCATCTCCTGCAGACATGCTCAACCCGATCTAGATAATTTCTCATTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTCCTGCAGACATGCTCAACCCGATCTAGATAATTTCTCATTAAT  250

seq1  ATTCTACCCATTCTCCTTTTAAAGACAGGATCTCATAGCTCAGATTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACCCATTCTCCTTTTAAAGACAGGATCTCATAGCTCAGATTGACC  300

seq1  TCAAAATTGCTATGAAACTAAGAATGACCCTGAATTCCAGATCGCCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTGCTATGAAACTAAGAATGACCCTGAATTCCAGATCGCCCTGC  350

seq1  TTCTGGCTCCCAAGTGCTGGGGTTACAGGCATGTGCCACCACACTGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCTCCCAAGTGCTGGGGTTACAGGCATGTGCCACCACACTGGCTC  400

seq1  TGCACTGCTGAGTCCAAACACATAAAATCATTCTGGGAAGATGAGAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGCTGAGTCCAAACACATAAAATCATTCTGGGAAGATGAGAAAGG  450

seq1  AAGAAAGAGGCCCTGGAAGAGAGTGATACAGTAAGAAGAATGCTTCGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAGGCCCTGGAAGAGAGTGATACAGTAAGAAGAATGCTTCGGAT  500

seq1  AAGGACGGAGGTGGATGTAGTCCTTGCTTGGGCCTAGACAAAAGGCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACGGAGGTGGATGTAGTCCTTGCTTGGGCCTAGACAAAAGGCAAAA  550

seq1  GGCCTTCAGGGAGGGAGGTAATGAATTCCACAAACAAGGAAGAGAAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCAGGGAGGGAGGTAATGAATTCCACAAACAAGGAAGAGAAATGA  600

seq1  CTTTAAGTAAGGATTAAATAGGAAGAGGAACTCATGACCTATATTGATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGTAAGGATTAAATAGGAAGAGGAACTCATGACCTATATTGATTG  650

seq1  TTCCACAAAATAACTCCTATTTATAGTTGATTAATTTCCATAATTGTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAAAATAACTCCTATTTATAGTTGATTAATTTCCATAATTGTAAT  700

seq1  TGTCCCTAGTGGTGAGTAGACAGTACCACCAAAAAGTGTGTGTG  744
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTAGTGGTGAGTAGACAGTACCACCAAAAAGTGTGTGTG  744

seq1: chr3_85077832_85078978
seq2: B6Ng01-191I09.g_67_1241 (reverse)

seq1  CTTGCTGTGGAATTGCAGTAT-GCTC-TGTTTCGTGTTCCCTAAAT-CGT  47
      |||||  |||||||||||||| |||| ||||||| || || ||||| |||
seq2  CTTGC-CTGGAATTGCAGTATGGCTCTTGTTTCG-GTACCGTAAATCCGT  48

seq1  TT-GCAACA-GGCAGCTGTGCTA--GGTCAG---AATCTCACA--GGGGA  88
      || |||||| |||||||||||||  | ||||   | |||||||  |||||
seq2  TTGGCAACAGGGCAGCTGTGCTAAGGTTCAGAGAATTCTCACAAGGGGGA  98

seq1  TTCTGAGATTCC--AGACAGGGTAGGGACTGGGAAG--AGTAC-AATTCA  133
      | ||||||||||   ||||||  |||||||||||||   |||| ||||||
seq2  TCCTGAGATTCCCAGGACAGGTAAGGGACTGGGAAGGAGGTACAAATTCA  148

seq1  C-ATA--TGTGGAG--CATCTGAGGAATTTGGGGGCTAAAAAG-AGAAGC  177
      | |||   | ||||  ||||||||||  ||||||||||||||| ||||||
seq2  CAATAATGGGGGAGGCCATCTGAGGATATTGGGGGCTAAAAAGAAGAAGC  198

seq1  TTCTAGATGGAA-GTGGC-TAAGATTCCTGGACCTT-CAAAGGGCTCAGG  224
      |||||||||||| ||||| ||||||||||||||||| |||||||||||||
seq2  TTCTAGATGGAAGGTGGCTTAAGATTCCTGGACCTTCCAAAGGGCTCAGG  248

seq1  AACCATCTCCGGT--CCATCCTGGTACCTGGGACGGACCTTTTATGGGTA  272
      |||||||||||||  | |||||||||||||||||||||||||||||||||
seq2  AACCATCTCCGGTTCCAATCCTGGTACCTGGGACGGACCTTTTATGGGTA  298

seq1  TTCAGCTCAACCATCCCATCAGCTGTAAACACATTTTAT--CCCAACATC  320
      ||||||||||||||||||||||||||||||||||||| |  |||||||||
seq2  TTCAGCTCAACCATCCCATCAGCTGTAAACACATTTTTTTCCCCAACATC  348

seq1  CCTGAGAGCCGGGTGCCAATAGCCAACTACTACAGGTGAGAGATAAGAAT  370
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGCCGGGTGCCAATAGCCAACTACTACAGGTGAGAGATAAGAAT  398

seq1  TTATTTAGTCTTCTCGGCTTTGCCAACCCAGGATTCAAATAAATACCAGC  420
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAGTCTTCTCGGCTTTGCCAACCCAGGATTCAAATAAATACCAGC  448

seq1  CCTTTGACCCAAATGCGCATGTTTTTGACCACAGTATATGGCCCCTCGTG  470
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGACCCAAATGCGCATGTTTTTGACCACAGTATATGGCCCCTCGTG  498

seq1  AATGAATTGATTCTAGAGCTAATGAATACACCAAGGCAGGCTTTTCTGCA  520
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTGATTCTAGAGCTAATGAATACACCAAGGCAGGCTTTTCTGCA  548

seq1  ACTTACACCCCAACCATTTATGCCTGGGCAATCAGAGTAGCTGAGTTCAC  570
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACACCCCAACCATTTATGCCTGGGCAATCAGAGTAGCTGAGTTCAC  598

seq1  CCATAAGGGAGGATACAAAATAGGACTTGAATTGGAACCAGTTACATGAA  620
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGGGAGGATACAAAATAGGACTTGAATTGGAACCAGTTACATGAA  648

seq1  TTAATTTTTGTCTTGGGGTTCTGACAGCAGAATAAACCAAAAAGCCCATA  670
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTGTCTTGGGGTTCTGACAGCAGAATAAACCAAAAAGCCCATA  698

seq1  ATTCCATGATGAAGTCATATCATTAAAACCCTTGGCAGCTCAGCTATTAT  720
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATGATGAAGTCATATCATTAAAACCCTTGGCAGCTCAGCTATTAT  748

seq1  TTTACGTAAAATATATGCATGGCTTCTGAGAATTTCTCTCCTCCAGCAAA  770
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGTAAAATATATGCATGGCTTCTGAGAATTTCTCTCCTCCAGCAAA  798

seq1  CAGGGCAGGAAAAATATATTAGTAATGGCCACAGTCTCTGCTACCCTGCT  820
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAGGAAAAATATATTAGTAATGGCCACAGTCTCTGCTACCCTGCT  848

seq1  GGTATTTATGGGACTTTATTGCTAGGACCGGTGCTGGCTTGGAAGTGGGA  870
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTATGGGACTTTATTGCTAGGACCGGTGCTGGCTTGGAAGTGGGA  898

seq1  AAGGTAAATGGTCTCTATGGTGGGAAACAGTGCACTGGACGCACTTCCAG  920
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAATGGTCTCTATGGTGGGAAACAGTGCACTGGACGCACTTCCAG  948

seq1  CAAAACCAGCAACTTCCAATCGCAGCACGGGGCACGCCAACATTCCTGGC  970
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCAGCAACTTCCAATCGCAGCACGGGGCACGCCAACATTCCTGGC  998

seq1  ACGTCTCTCCCCAAAAGAGAGCCTGGCGCAGTCCACGGAATCTTCTGAGC  1020
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTCTCCCCAAAAGAGAGCCTGGCGCAGTCCACGGAATCTTCTGAGC  1048

seq1  CCACATCAAAGGCTGTGTGAAGCTCAGTATTTGGGACTTCTCCTTTGCAG  1070
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCAAAGGCTGTGTGAAGCTCAGTATTTGGGACTTCTCCTTTGCAG  1098

seq1  CCGGCTCCCTAACGTGGGGTGGGGTCATCTGGGGCAAATAACAAAACATT  1120
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTCCCTAACGTGGGGTGGGGTCATCTGGGGCAAATAACAAAACATT  1148

seq1  TTCTCCAAAACGCCATACTTGGAATTC  1147
      |||||||||||||||||||||||||||
seq2  TTCTCCAAAACGCCATACTTGGAATTC  1175

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information