BAC Information

Click to search

BAC

Clone NameB6Ng01-191N20
Chromosome3 (Build37)
Map Location 76,898,328 - 76,899,473
singlet/doubletsinglet
Overlap genenone
Upstream geneFstl5, LOC100041625, LOC100041635
Downstream geneDnmt3a-ps1, EG626461, LOC667526
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191N20.bB6Ng01-191N20.g
ACCGA015253GA015254
length9891,120
definitionB6Ng01-191N20.b B6Ng01-191N20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccccctaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcatggaatttcaagtcaaatcaaccctgagat
tccccctcacagcagtcagaatggttaaaataaaaaattcgtgacagcag
atgttggcaaggatgtggagaaagatgaacactctccatttttggtggga
ttgcaggctcgtacaaccactctggaaatcagtctggcggttcctcagaa
aatggacataggagatagccggccaccttcctggtgagagcacgggggtc
tgccaggcctgagaggtttgtggcacaggcgccggcgggagccttcttgg
ctccgggactccgcggagggcaggctgcatgggtgaccgtgtggaataca
gagtgccagccgtttctgggacgggcgagagtcgcagagcttctgaggca
gcgccatcctcagctccagacggccggcctccttccggacaagagccaca
gagctgctcaggcggcgacatcttcgactccagacaactggccaccttcc
tggccaaagcaacacagcttctgggaaagatcctgttttgggccttcacc
ttcagccaggagggggtccaaacaccagataactgtacaccttccctgaa
agaggagagcttgcctacagagactgctctgaccactgaaactcagagaa
gagagcttgtctcccacgcctgctgatagagggtaacaaaatcaacagag
gaacaatctcttaacaaagacaactataacaactaactccagagattgcc
agatggcgaaagggtaaacgtaagaatcctactaacagaagccagggacc
actcaccatcatcagaacccagaacgcccacttcgcccaatccaggacac
cctaacacacctgaaaaggtagacctggatttaaaagcatatctcatgat
gatggtaggagggacataaagaagggattcattatcctc

gaattcactaatctcttgtacttctatttctacactcttaattaaaattg
tatttgccagttctactgagtgatagaaacttgagtgacagaattctaat
agaagctttatagtattaatagaagctgtcaatatcaaactggtatttct
taacttttgccaaaatacagttactcacaaattcagtgatgttagatgga
ggaaattagtaagaccactaaaataaaaatatatctatcatttatcatgc
caactataagatttgttcacattcttgtctatcttgtctattgattttta
gctatctgaccagttatcaaaatcaaaaatcaaacttgtttttttttctg
agactattttctagtttgttcctatcctattatcattcagttatactatc
atgtaattttttaactctgaccattgatttgaacttatttttcttagtgt
gcacttattaccatgaaaagagaaatattgtcctcatcaatgaagtgctg
attccatggaaattgtatgcctttctttgatgaacttttataaatatagg
atgagacagataattgttgctgctgagaatgtgattcataaaattatacc
taagttcttagattctcttctacttaatgggatcctctgataaaaatttt
gacctcatgccacttgcagattcaaaattctctgccttgttctcaaaatt
gggaacaaatgtataaataaatgtatagatgaagtaaaagcaaatatctc
catataacctgctttatggaggcagagtaatattcaggggagttgattcc
cagcgtacatggtcagcaacacctcttagaataagaaagtatataaagaa
tatatattgtactggctgatttctcttgaaccaaatatcctggagatttc
tacagcattagatatagaggagaaagaaaaagatatatttcctgaactga
ggcctaagttgtatcattacttaaaatttttgatgcatagaagaagacat
ctgcctttgtcagaattttaaatagtcccaatctggaatcgacagtaaga
gagacttataaaatattagagtctgagacctacaaaacaaatttttatgt
atgattaaattttttattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_76898328_76899473
seq2: B6Ng01-191N20.g_67_1186

seq1  GAATTCACTAATCTCTTGTACTTCTATTTCTACACTCTTAATTAAAATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAATCTCTTGTACTTCTATTTCTACACTCTTAATTAAAATTG  50

seq1  TATTTGCCAGTTCTACTGAGTGATAGAAACTTGAGTGACAGAATTCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCCAGTTCTACTGAGTGATAGAAACTTGAGTGACAGAATTCTAAT  100

seq1  AGAAGCTTTATAGTATTAATAGAAGCTGTCAATATCAAACTGGTATTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTTATAGTATTAATAGAAGCTGTCAATATCAAACTGGTATTTCT  150

seq1  TAACTTTTGCCAAAATACAGTTACTCACAAATTCAGTGATGTTAGATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTGCCAAAATACAGTTACTCACAAATTCAGTGATGTTAGATGGA  200

seq1  GGAAATTAGTAAGACCACTAAAATAAAAATATATCTATCATTTATCATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTAGTAAGACCACTAAAATAAAAATATATCTATCATTTATCATGC  250

seq1  CAACTATAAGATTTGTTCACATTCTTGTCTATCTTGTCTATTGATTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATAAGATTTGTTCACATTCTTGTCTATCTTGTCTATTGATTTTTA  300

seq1  GCTATCTGACCAGTTATCAAAATCAAAAATCAAACTTGTTTTTTTTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTGACCAGTTATCAAAATCAAAAATCAAACTTGTTTTTTTTTCTG  350

seq1  AGACTATTTTCTAGTTTGTTCCTATCCTATTATCATTCAGTTATACTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATTTTCTAGTTTGTTCCTATCCTATTATCATTCAGTTATACTATC  400

seq1  ATGTAATTTTTTAACTCTGACCATTGATTTGAACTTATTTTTCTTAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATTTTTTAACTCTGACCATTGATTTGAACTTATTTTTCTTAGTGT  450

seq1  GCACTTATTACCATGAAAAGAGAAATATTGTCCTCATCAATGAAGTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTATTACCATGAAAAGAGAAATATTGTCCTCATCAATGAAGTGCTG  500

seq1  ATTCCATGGAAATTGTATGCCTTTCTTTGATGAACTTTTATAAATATAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATGGAAATTGTATGCCTTTCTTTGATGAACTTTTATAAATATAGG  550

seq1  ATGAGACAGATAATTGTTGCTGCTGAGAATGTGATTCATAAAATTATACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACAGATAATTGTTGCTGCTGAGAATGTGATTCATAAAATTATACC  600

seq1  TAAGTTCTTAGATTCTCTTCTACTTAATGGGATCCTCTGATAAAAATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCTTAGATTCTCTTCTACTTAATGGGATCCTCTGATAAAAATTTT  650

seq1  GACCTCATGCCACTTGCAGATTCAAAATTCTCTGCCTTGTTCTCAAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCATGCCACTTGCAGATTCAAAATTCTCTGCCTTGTTCTCAAAATT  700

seq1  GGGAACAAATGTATAAATAAATGTATAGATGAAGTAAAAGCAAATATCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAAATGTATAAATAAATGTATAGATGAAGTAAAAGCAAATATCTC  750

seq1  CATATAACCTGCTTTATGGAGGCAGAGTAATATTCAGGGGAGTTGATTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAACCTGCTTTATGGAGGCAGAGTAATATTCAGGGGAGTTGATTCC  800

seq1  CAGCGTACATGGTCAGCAACACCTCTTAGAATAAGAAAGTATATAAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTACATGGTCAGCAACACCTCTTAGAATAAGAAAGTATATAAAGAA  850

seq1  TATATATTGTACTGGCTGATTTCTCTTGAACCAAATATCCTGGAGATTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTGTACTGGCTGATTTCTCTTGAACCAAATATCCTGGAGATTTC  900

seq1  TACAGCATTAGATATAGAGGAGAAAGAAAAAGAATATAATTCCTGAACTG  950
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  TACAGCATTAGATATAGAGGAGAAAGAAAAAG-ATATATTTCCTGAACTG  949

seq1  AGGCCTAAGTTGTATCATTACTTAAAATTTTGAATGCATAGAAGAAGACA  1000
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  AGGCCTAAGTTGTATCATTACTTAAAATTTTTGATGCATAGAAGAAGACA  999

seq1  CCTGCCCTTTGGTCCAGGAAAATTTTAAATTAGTTCCCAATCTTGAAATC  1050
       |||||  || |||    | ||||||||| ||| |||||||| || ||||
seq2  TCTGCC--TTTGTC----AGAATTTTAAA-TAG-TCCCAATC-TGGAATC  1040

seq1  CGAACAGTTAAAGAGAGACTTATAAAAATATTAGAGTTCTGAGAACTTAC  1100
         |||||  ||||||||||||| |||||||||||| |||||| || |||
seq2  --GACAGT--AAGAGAGACTTAT-AAAATATTAGAG-TCTGAG-ACCTAC  1083

seq1  AAAACAAATTTTTTAATGTAGTGATTTTTAAAATATTTTTTATTAT  1146
      |||||||||||||  ||||| |||||      | ||||||||||||
seq2  AAAACAAATTTTT--ATGTA-TGATT------AAATTTTTTATTAT  1120


| Home | SequenceCutter | Blast | Download |