BAC Information

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BAC

Clone NameB6Ng01-191P11
Chromosome3 (Build37)
Map Location 40,275,771 - 40,404,612
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191P11.bB6Ng01-191P11.g
ACCGA015330GA015331
length1,1951,055
definitionB6Ng01-191P11.b B6Ng01-191P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,403,402 - 40,404,612)(40,275,771 - 40,276,825)
sequence
gaattctttaggaggttatgtgatatgtaataagctgatgtacgccagat
ggcgttaggtaagggcagactctgggaaagcgaagggcctgtgtcgaaca
gggcttaaagtaattctcaagcatcttgtaaaataccagataggttaaag
cagaaaccgtaactcgcttctaaaaaggaagcttttctaagtttgaacag
atttccatctcatgtgtgatttttttttccctttcagttgcagttaggga
agactactgtatcacaagctttacgtccaatctgaaactcagctgtgaat
gacctgggtgccaaagatccctttcctaagcgacaagacaactgctcata
gaaaaacgggctcatttcttttttacagtgtgtctctattctctatcaac
tgaggaagcactgttaagcacattgtatgtagcacacacggctacacaca
catgtgtgtgtgtatatactcagacagtctgcagtgggtgtgcagtaggg
tgagaacattgaacagaagaatcgccccggaagagcagcaagtagattcg
tcttccccacagaacccacggggaggctcttgtgacaaataacttcacaa
gtgacagccaagaaaagatgttaaaaaaggaacattttgtttcataaaac
agcacagtggcagaaaacatacattagaccttttgctcgtgccgacagtg
ctctgtgctctgcaggcctgtaacataaattctgggccatttttggagaa
gtagctaattttgtttcagggggggttatccctaaagataagttttatca
tttaaagcacacttttgtgatggcgttctctttgtgttgattatcaggct
gatgggaaaggatgtacttcgtgggcacccgtgttgtattgggcaagtcc
cttcctgaacattgtgtctgatgcccctttgttgtttgtagagcagtgtt
aacatgtgaatggacaaagtggggagggggcttacacatattacttattg
tacctggtgtagtttattattactatatcaagtagatgtttcagtctcag
ctcagactgccaagcgactcttctcttatgttgacactgggctcttgacc
acaggcattcttctattttctctccaagacctcgcatgactgccattcct
tgtcacattactacttgtcattttagcagccgttttaagtcttag
gaattcacatctttgtccatatttactggaaaccccagtaataaagcaaa
ataagactttaatcctaacaaaaatgggttttctcgctgccttttcattt
ttaaattttcttctatctcagtacccatacccgatacactcagaacttca
cacactgcctcactacaaataccacctcttgcctccaaaggttttgtatg
attactgtattcatgtatgatgttttgttatgctcataatatgctggggg
aaacacatttaaatcagaacatggagcactaaaaacaataaggggcctgg
gaagcatcagagccacagatcaatgcattgcatgtgaacagccaaaacaa
tccaattaaaagaataaaaccaggccatcaccttagacactgacttggta
gctaagaaagtatcaatacaaatagtataagagagaaaattcagatagaa
acttttgtttctgtccttcccctcacttcctgataacttacatggaatag
aataaacaaacaaagtgaatcaaagcagacagaagaaataaagagctttt
ccaacagacaactctggttggggtactcagcgaggaccaataaaaaaatt
aataacgaacttggacactatcaaattcgaaagttagtctggacaaggat
tgaagttattataaaaagcatttttgctaagagttcagcattttggagcg
agcttggtggccaagtttggcgacttgacatcaggctcataaaactgtgc
ttggaaagtggtctgatactctggagatcactgcactggtttggcagact
tggatattttttattagaaaacatttccattgcaacagcgagtagagtat
tagggagatcagatccaatttttaggacatttatgattaatatttttcat
gacatatcctatgtcaggaactgggaatccaaggctctgtgtgctgtgtg
tctacacacgtgtgcactgaaactagaaggtagatttctgctcttgaagt
agcagtccatcggcacagcaccagcctgctgcgcggaggccaggacaaag
ccaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_40403402_40404612
seq2: B6Ng01-191P11.b_48_1242 (reverse)

seq1  CTAAGACTTAAAACGGCTCCTAAAATGGAAACAAAGTAGTAAATTGTGTG  50
      |||||||||||||||||| ||||||||   || |||||||||    ||||
seq2  CTAAGACTTAAAACGGCTGCTAAAATG---AC-AAGTAGTAA----TGTG  42

seq1  ACAGAGAAATGGCCAGGTTCCAGCGAAGGCCTGTGGAGAGAATAGAAAGA  100
      ||| || ||||| |||  ||  |||| | | ||  |||| |||||||  |
seq2  ACA-AGGAATGG-CAG--TCATGCGAGGTCTTGGAGAGAAAATAGAAGAA  88

seq1  TGCCTGTGGTC-AGAGCCCAGTGTTCACAT-AGAGGAGGAAGTCGGCTTT  148
      ||||||||||| ||||||||||||  |||| |||| ||  |||| |||| 
seq2  TGCCTGTGGTCAAGAGCCCAGTGTCAACATAAGAGAAG--AGTC-GCTTG  135

seq1  GCAGTCTGAGGCTGAAGACTGGAAACATCTTAACTTGATATTAGTAATAT  198
      ||||||||| |||| ||||| |||||||||  |||||||| |||||||| 
seq2  GCAGTCTGA-GCTG-AGACT-GAAACATCT--ACTTGATA-TAGTAATAA  179

seq1  AAAACTACCACAGGTACAAT-AGTAATATTGTGTAAGCCCC--TCCCACT  245
       |||||||  |||||||||| ||||||| ||||||||||||   ||||||
seq2  TAAACTACACCAGGTACAATAAGTAATA-TGTGTAAGCCCCCTCCCCACT  228

seq1  TTGTCCATTCACATGTTAACACTGCTCTACAAACAACAAAGGGGCATCAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCATTCACATGTTAACACTGCTCTACAAACAACAAAGGGGCATCAG  278

seq1  ACACAATGTTCAGGAAGGGACTTGCCCAATACAACACGGGTGCCCACGAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGTTCAGGAAGGGACTTGCCCAATACAACACGGGTGCCCACGAA  328

seq1  GTACATCCTTTCCCATCAGCCTGATAATCAACACAAAGAGAACGCCATCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCCTTTCCCATCAGCCTGATAATCAACACAAAGAGAACGCCATCA  378

seq1  CAAAAGTGTGCTTTAAATGATAAAACTTATCTTTAGGGATAA-CCCCCCT  444
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAAAAGTGTGCTTTAAATGATAAAACTTATCTTTAGGGATAACCCCCCCT  428

seq1  GAAACAAAATTAGCTACTTCTCCAAAAATGGCCCAGAATTTATGTTACAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAAATTAGCTACTTCTCCAAAAATGGCCCAGAATTTATGTTACAG  478

seq1  GCCTGCAGAGCACAGAGCACTGTCGGCACGAGCAAAAGGTCTAATGTATG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAGAGCACAGAGCACTGTCGGCACGAGCAAAAGGTCTAATGTATG  528

seq1  TTTTCTGCCACTGTGCTGTTTTATGAAACAAAATGTTCCTTTTTTAACAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCCACTGTGCTGTTTTATGAAACAAAATGTTCCTTTTTTAACAT  578

seq1  CTTTTCTTGGCTGTCACTTGTGAAGTTATTTGTCACAAGAGCCTCCCCGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTGGCTGTCACTTGTGAAGTTATTTGTCACAAGAGCCTCCCCGT  628

seq1  GGGTTCTGTGGGGAAGACGAATCTACTTGCTGCTCTTCCGGGGCGATTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGTGGGGAAGACGAATCTACTTGCTGCTCTTCCGGGGCGATTCT  678

seq1  TCTGTTCAATGTTCTCACCCTACTGCACACCCACTGCAGACTGTCTGAGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCAATGTTCTCACCCTACTGCACACCCACTGCAGACTGTCTGAGT  728

seq1  ATATACACACACACATGTGTGTGTAGCCGTGTGTGCTACATACAATGTGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACACACACATGTGTGTGTAGCCGTGTGTGCTACATACAATGTGC  778

seq1  TTAACAGTGCTTCCTCAGTTGATAGAGAATAGAGACACACTGTAAAAAAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGTGCTTCCTCAGTTGATAGAGAATAGAGACACACTGTAAAAAAG  828

seq1  AAATGAGCCCGTTTTTCTATGAGCAGTTGTCTTGTCGCTTAGGAAAGGGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGCCCGTTTTTCTATGAGCAGTTGTCTTGTCGCTTAGGAAAGGGA  878

seq1  TCTTTGGCACCCAGGTCATTCACAGCTGAGTTTCAGATTGGACGTAAAGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGCACCCAGGTCATTCACAGCTGAGTTTCAGATTGGACGTAAAGC  928

seq1  TTGTGATACAGTAGTCTTCCCTAACTGCAACTGAAAGGGAAAAAAAAATC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATACAGTAGTCTTCCCTAACTGCAACTGAAAGGGAAAAAAAAATC  978

seq1  ACACATGAGATGGAAATCTGTTCAAACTTAGAAAAGCTTCCTTTTTAGAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGAGATGGAAATCTGTTCAAACTTAGAAAAGCTTCCTTTTTAGAA  1028

seq1  GCGAGTTACGGTTTCTGCTTTAACCTATCTGGTATTTTACAAGATGCTTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGTTACGGTTTCTGCTTTAACCTATCTGGTATTTTACAAGATGCTTG  1078

seq1  AGAATTACTTTAAGCCCTGTTCGACACAGGCCCTTCGCTTTCCCAGAGTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTACTTTAAGCCCTGTTCGACACAGGCCCTTCGCTTTCCCAGAGTC  1128

seq1  TGCCCTTACCTAACGCCATCTGGCGTACATCAGCTTATTACATATCACAT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTACCTAACGCCATCTGGCGTACATCAGCTTATTACATATCACAT  1178

seq1  AACCTCCTAAAGAATTC  1211
      |||||||||||||||||
seq2  AACCTCCTAAAGAATTC  1195

seq1: chr3_40275771_40276825
seq2: B6Ng01-191P11.g_65_1119

seq1  GAATTCACATCTTTGTCCATATTTACTGGAAACCCCAGTAATAAAGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCTTTGTCCATATTTACTGGAAACCCCAGTAATAAAGCAAA  50

seq1  ATAAGACTTTAATCCTAACAAAAATGGGTTTTCTCGCTGCCTTTTCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACTTTAATCCTAACAAAAATGGGTTTTCTCGCTGCCTTTTCATTT  100

seq1  TTAAATTTTCTTCTATCTCAGTACCCATACCCGATACACTCAGAACTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTTCTTCTATCTCAGTACCCATACCCGATACACTCAGAACTTCA  150

seq1  CACACTGCCTCACTACAAATACCACCTCTTGCCTCCAAAGGTTTTGTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGCCTCACTACAAATACCACCTCTTGCCTCCAAAGGTTTTGTATG  200

seq1  ATTACTGTATTCATGTATGATGTTTTGTTATGCTCATAATATGCTGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGTATTCATGTATGATGTTTTGTTATGCTCATAATATGCTGGGGG  250

seq1  AAACACATTTAAATCAGAACATGGAGCACTAAAAACAATAAGGGGCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATTTAAATCAGAACATGGAGCACTAAAAACAATAAGGGGCCTGG  300

seq1  GAAGCATCAGAGCCACAGATCAATGCATTGCATGTGAACAGCCAAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATCAGAGCCACAGATCAATGCATTGCATGTGAACAGCCAAAACAA  350

seq1  TCCAATTAAAAGAATAAAACCAGGCCATCACCTTAGACACTGACTTGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTAAAAGAATAAAACCAGGCCATCACCTTAGACACTGACTTGGTA  400

seq1  GCTAAGAAAGTATCAATACAAATAGTATAAGAGAGAAAATTCAGATAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAAAGTATCAATACAAATAGTATAAGAGAGAAAATTCAGATAGAA  450

seq1  ACTTTTGTTTCTGTCCTTCCCCTCACTTCCTGATAACTTACATGGAATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTTTCTGTCCTTCCCCTCACTTCCTGATAACTTACATGGAATAG  500

seq1  AATAAACAAACAAAGTGAATCAAAGCAGACAGAAGAAATAAAGAGCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAAACAAAGTGAATCAAAGCAGACAGAAGAAATAAAGAGCTTTT  550

seq1  CCAACAGACAACTCTGGTTGGGGTACTCAGCGAGGACCAATAAAAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGACAACTCTGGTTGGGGTACTCAGCGAGGACCAATAAAAAAATT  600

seq1  AATAACGAACTTGGACACTATCAAATTCGAAAGTTAGTCTGGACAAGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACGAACTTGGACACTATCAAATTCGAAAGTTAGTCTGGACAAGGAT  650

seq1  TGAAGTTATTATAAAAAGCATTTTTGCTAAGAGTTCAGCATTTTGGAGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTATTATAAAAAGCATTTTTGCTAAGAGTTCAGCATTTTGGAGCG  700

seq1  AGCTTGGTGGCCAAGTTTGGCGACTTGACATCAGGCTCATAAAACTGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGTGGCCAAGTTTGGCGACTTGACATCAGGCTCATAAAACTGTGC  750

seq1  TTGGAAAGTGGTCTGATACTCTGGAGATCACTGCACTGGTTTGGCAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAGTGGTCTGATACTCTGGAGATCACTGCACTGGTTTGGCAGACT  800

seq1  TGGATATTTTTTATTAGAAAACATTTCCATTGCAACAGCGAGTAGAGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATTTTTTATTAGAAAACATTTCCATTGCAACAGCGAGTAGAGTAT  850

seq1  TAGGGAGATCAGATCCAATTTTTAGGACATTTATGATTAATATTTTTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGATCAGATCCAATTTTTAGGACATTTATGATTAATATTTTTCAT  900

seq1  GACATATCCTATGTCAGGGAACTGGG-ATCCAAGGCTCTGTGTGCTGTGT  949
      |||||||||||||||| ||||||||| |||||||||||||||||||||||
seq2  GACATATCCTATGTCA-GGAACTGGGAATCCAAGGCTCTGTGTGCTGTGT  949

seq1  GTCTACACACGTGTGCACTGAAACTTAGAAGGTAGATTTCTGCTCTTGAA  999
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTCTACACACGTGTGCACTGAAAC-TAGAAGGTAGATTTCTGCTCTTGAA  998

seq1  GTAGCAGTCCATCGGCACAGCACCAG-CTGCTGCGCGGAAGCCAGGACAA  1048
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  GTAGCAGTCCATCGGCACAGCACCAGCCTGCTGCGCGGAGGCCAGGACAA  1048

seq1  AGCCAGA  1055
      |||||||
seq2  AGCCAGA  1055