BAC Information

Click to search

BAC

Clone NameB6Ng01-192B06
Chromosome3 (Build37)
Map Location 117,248,631 - 117,362,137
singlet/doubletdoublet
Overlap gene4833424O15Rik
Upstream geneDbt, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
Downstream geneEG668759, Snx7, LOC100043260, Dpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192B06.bB6Ng01-192B06.g
ACCGA015408GA015409
length1,1701,161
definitionB6Ng01-192B06.b B6Ng01-192B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,248,631 - 117,249,800)(117,360,958 - 117,362,137)
sequence
gaattcattggttcattttgttttcaggaacaggaactaagctttgggtg
ctattgattcttattggtcagcatctggaaagtccccagttcttccaggg
cctaagaccttgaacttagtttcatcttataggtaatatgaagtctgaag
tcaaaatggcagtacttaagacacgttcttttctttagtcccagtactaa
aaactccttgtcactcgtttgccgttgttctgttctgaacaagtgtcata
ttttattggagctagttagtacctgaactttacggcttccctccccattt
ccttcaggagcctcacccataaaatctcagtgaaatttctacaacataaa
ttagctcatgctattcatttgtcctcaaatacatcaattccatgctgtac
aaaatagcatcagcatctataaaacaatctatgaacataccattggacag
ccctgggctgtctctgtggttttcatcaactatctacttcttattttgat
tttatcttacttacactctcctgggctacctatagttccctgttgaacat
catggaacacagcgagtttattgctgcctcgtggctaacatgtcctccag
tagtttctcccacttgcctgtattttgctttatttttacttttttattag
atattttctttatttacatttcaaatgttataccctttcctagtttcccc
tctgaaaatcctctatcccctccccacttcccctgctccacatctcatcc
actcctgcttactggacctggcattcccctcctggggcatagaaccttca
caggaccaaggtcctcttctctgattgatgactgactaggccatcctctg
ctacatatgcaactacaatcataagtcctaccacgtgttttctttggttg
gtggtttagtccctgggagctcttggggtactgggttatttcatattgtt
gttcctcatatggggcttcaaacccctttagctccttggtacttctctag
ctctgccctatctctgctcaagtgttaccttccaatcaaaggccttcctc
aagggagtgtcactgggcttacacataatacttaagcagacctccaatgc
ccagcaataaaataggcaacacaaaaatgaactcaaaggcattttgaaga
atttttccctttatttgctt
gaattcaaatttggcttttcttctattaaatttgaggctaatgtcccaac
ccagaatggagtgtgggaggtcacagaatttccagagctataggaattac
ataggtgacaagaattttacacaccattagtataagattaagaatgatta
tggcaatgctttggaaaatacacatattgttgaagcataaccaccattaa
tataaccgaagacaaattagagaaattttcatttgaacttggcaactctc
taatactttatgaaacaagtgccctataaacagtttatttgtattatcct
tgcagaaagtctattattgctaacctgcagaaggagaaatcatagcataa
tgacctatcaaggaagctggttataggacagaaattgattatttatgctt
tgttggtttctaattcacttatgaaaccatctacgttaaccagatgtgaa
aatggagctaaaaataaacacaaacagaaggagagtgtgatttgagcagg
acattgtttcctccatcctcaagggtctatggatgcttacagcctgtgca
tttagctgtattatcagtccttattcaccctctccactcatgcccaatag
caagaaaatgcagaaagctaaagctcatcatttatctcctgttaaaattc
tagtatatatttcttcatatgtatctatgcttattaaaatttatacaatg
attgatatatatacacacatcgattttgccaagtggttttcttttagtaa
aggatataaacatatttaagaaaatgtacacatgcattgagcacctacta
tgtgccaacggctatgttaaatttctcaaaagaggaaacatctaaggttt
gatcctgaaggatgagcattggtgacacaggctcagggaaagtgaaaatc
ttgaggggagctaacctagttgtaggacacaagccaggaaagccagtctt
gtgctctcaaggaaccttgctcatttctcagagctcatgcacgggtctgg
gtggtatttgtctcacttgtttccctcaccccagggaagacagaaatcga
gcccagttctttactgtataactctgtgctgctctgtcactccaggaggt
ctcataatctagacctataatgagcgattgactgagccaatgctgaactg
gagagagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117248631_117249800
seq2: B6Ng01-192B06.b_37_1206

seq1  GAATTCATTGGTTCATTTTGTTTTCAGGAACAGGAACTAAGCTTTGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGTTCATTTTGTTTTCAGGAACAGGAACTAAGCTTTGGGTG  50

seq1  CTATTGATTCTTATTGGTCAGCATCTGGAAAGTCCCCAGTTCTTCCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGATTCTTATTGGTCAGCATCTGGAAAGTCCCCAGTTCTTCCAGGG  100

seq1  CCTAAGACCTTGAACTTAGTTTCATCTTATAGGTAATATGAAGTCTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGACCTTGAACTTAGTTTCATCTTATAGGTAATATGAAGTCTGAAG  150

seq1  TCAAAATGGCAGTACTTAAGACACGTTCTTTTCTTTAGTCCCAGTACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGGCAGTACTTAAGACACGTTCTTTTCTTTAGTCCCAGTACTAA  200

seq1  AAACTCCTTGTCACTCGTTTGCCGTTGTTCTGTTCTGAACAAGTGTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCTTGTCACTCGTTTGCCGTTGTTCTGTTCTGAACAAGTGTCATA  250

seq1  TTTTATTGGAGCTAGTTAGTACCTGAACTTTACGGCTTCCCTCCCCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGGAGCTAGTTAGTACCTGAACTTTACGGCTTCCCTCCCCATTT  300

seq1  CCTTCAGGAGCCTCACCCATAAAATCTCAGTGAAATTTCTACAACATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGGAGCCTCACCCATAAAATCTCAGTGAAATTTCTACAACATAAA  350

seq1  TTAGCTCATGCTATTCATTTGTCCTCAAATACATCAATTCCATGCTGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCATGCTATTCATTTGTCCTCAAATACATCAATTCCATGCTGTAC  400

seq1  AAAATAGCATCAGCATCTATAAAACAATCTATGAACATACCATTGGACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCATCAGCATCTATAAAACAATCTATGAACATACCATTGGACAG  450

seq1  CCCTGGGCTGTCTCTGTGGTTTTCATCAACTATCTACTTCTTATTTTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGCTGTCTCTGTGGTTTTCATCAACTATCTACTTCTTATTTTGAT  500

seq1  TTTATCTTACTTACACTCTCCTGGGCTACCTATAGTTCCCTGTTGAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTACTTACACTCTCCTGGGCTACCTATAGTTCCCTGTTGAACAT  550

seq1  CATGGAACACAGCGAGTTTATTGCTGCCTCGTGGCTAACATGTCCTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAACACAGCGAGTTTATTGCTGCCTCGTGGCTAACATGTCCTCCAG  600

seq1  TAGTTTCTCCCACTTGCCTGTATTTTGCTTTATTTTTACTTTTTTATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCTCCCACTTGCCTGTATTTTGCTTTATTTTTACTTTTTTATTAG  650

seq1  ATATTTTCTTTATTTACATTTCAAATGTTATACCCTTTCCTAGTTTCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTTTATTTACATTTCAAATGTTATACCCTTTCCTAGTTTCCCC  700

seq1  TCTGAAAATCCTCTATCCCCTCCCCACTTCCCCTGCTCCACATCTCATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAATCCTCTATCCCCTCCCCACTTCCCCTGCTCCACATCTCATCC  750

seq1  ACTCCTGCTTACTGGACCTGGCATTCCCCTCCTGGGGCATAGAACCTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGCTTACTGGACCTGGCATTCCCCTCCTGGGGCATAGAACCTTCA  800

seq1  CAGGACCAAGGTCCTCTTCTCTGATTGATGACTGACTAGGCCATCCTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCAAGGTCCTCTTCTCTGATTGATGACTGACTAGGCCATCCTCTG  850

seq1  CTACATATGCAACTACAATCATAAGTCCTACCACGTGTTTTCTTTGGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATATGCAACTACAATCATAAGTCCTACCACGTGTTTTCTTTGGTTG  900

seq1  GTGGTTTAGTCCCTGGGAGCTCTTGGGGTACT-GGTTATTTCATATTGTT  949
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTGGTTTAGTCCCTGGGAGCTCTTGGGGTACTGGGTTATTTCATATTGTT  950

seq1  GTTCCTCATATGGGGCTTCAAACCCCTTTAGCTCCTTGGGTACTTTCTCT  999
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  GTTCCTCATATGGGGCTTCAAACCCCTTTAGCTCCTT-GGTAC-TTCTCT  998

seq1  AGCTCTGCCCTATTCTCTGCTCAAGTGTTACCTTCCAATCAAAGGCCTTC  1049
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGCCCTA-TCTCTGCTCAAGTGTTACCTTCCAATCAAAGGCCTTC  1047

seq1  CTCAAGGGAGTGTCACTGGGCTTACACATAATACTTAAGGCCAGA-CTCC  1098
      |||||||||||||||||||||||||||||||||||||||  |||| ||||
seq2  CTCAAGGGAGTGTCACTGGGCTTACACATAATACTTAAG--CAGACCTCC  1095

seq1  -ATGCCCAGCCAT-AAATAGCCAACAC-AAAATGAACTCAAAGGCATTTT  1145
       ||||||||| || |||||| |||||| |||||||||||||||||| |||
seq2  AATGCCCAGCAATAAAATAGGCAACACAAAAATGAACTCAAAGGCA-TTT  1144

seq1  TGAAG-ATTTTTTCCTTATTTTGCTT  1170
      ||||| |||||| ||||  |||||||
seq2  TGAAGAATTTTTCCCTTTATTTGCTT  1170

seq1: chr3_117360958_117362137
seq2: B6Ng01-192B06.g_64_1224 (reverse)

seq1  CTCTCTCTCT-CAGCTCAGCATTTGCACTCCAACTCAATCTGCTCATTAT  49
      |||||||||| ||| |||||||| || |    | |||||| |||||||| 
seq2  CTCTCTCTCTCCAGTTCAGCATTGGCTC----AGTCAATC-GCTCATTA-  44

seq1  TAAGTCTAGATTTATTGAGGACCTCCTGGAAGTTGGACCAAGAGCCAAGC  99
      || |||||||||   ||| |||||||||| |||  |||  |||||  |||
seq2  TAGGTCTAGATT--ATGA-GACCTCCTGG-AGT--GAC--AGAGC--AGC  84

seq1  ACAGAGTTTATACAGTAAAGGACTGGGCTCGATTTCTGTCTTCCCTGGGG  149
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  ACAGAG-TTATACAGTAAAGAACTGGGCTCGATTTCTGTCTTCCCTGGGG  133

seq1  TGAGGGAAACAAGTGAGACAAATACCACCCAGACCCGGTGGCATGAGCTC  199
      |||||||||||||||||||||||||||||||||||||   ||||||||||
seq2  TGAGGGAAACAAGTGAGACAAATACCACCCAGACCCG--TGCATGAGCTC  181

seq1  TGAGAAAATGAGCAAGGTTCCTTGAGAGCACAAGACTGGCTTTCCTGGCT  249
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAG-AAATGAGCAAGGTTCCTTGAGAGCACAAGACTGGCTTTCCTGGCT  230

seq1  TGTGTCCTACAACTAGGTTAGCTCCCCTCAAGATTTTCACTTTCCCTGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTACAACTAGGTTAGCTCCCCTCAAGATTTTCACTTTCCCTGAG  280

seq1  CCTGTGTCACCAATGCTCATCCTTCAGGATCAAACCTTAGATGTTTCCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTCACCAATGCTCATCCTTCAGGATCAAACCTTAGATGTTTCCTC  330

seq1  TTTTGAGAAATTTAACATAGCCGTTGGCACATAGTAGGTGCTCAATGCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGAAATTTAACATAGCCGTTGGCACATAGTAGGTGCTCAATGCAT  380

seq1  GTGTACATTTTCTTAAATATGTTTATATCCTTTACTAAAAGAAAACCACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACATTTTCTTAAATATGTTTATATCCTTTACTAAAAGAAAACCACT  430

seq1  TGGCAAAATCGATGTGTGTATATATATCAATCATTGTATAAATTTTAATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAATCGATGTGTGTATATATATCAATCATTGTATAAATTTTAATA  480

seq1  AGCATAGATACATATGAAGAAATATATACTAGAATTTTAACAGGAGATAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGATACATATGAAGAAATATATACTAGAATTTTAACAGGAGATAA  530

seq1  ATGATGAGCTTTAGCTTTCTGCATTTTCTTGCTATTGGGCATGAGTGGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAGCTTTAGCTTTCTGCATTTTCTTGCTATTGGGCATGAGTGGAG  580

seq1  AGGGTGAATAAGGACTGATAATACAGCTAAATGCACAGGCTGTAAGCATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAATAAGGACTGATAATACAGCTAAATGCACAGGCTGTAAGCATC  630

seq1  CATAGACCCTTGAGGATGGAGGAAACAATGTCCTGCTCAAATCACACTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACCCTTGAGGATGGAGGAAACAATGTCCTGCTCAAATCACACTCT  680

seq1  CCTTCTGTTTGTGTTTATTTTTAGCTCCATTTTCACATCTGGTTAACGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTTTGTGTTTATTTTTAGCTCCATTTTCACATCTGGTTAACGTA  730

seq1  GATGGTTTCATAAGTGAATTAGAAACCAACAAAGCATAAATAATCAATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTCATAAGTGAATTAGAAACCAACAAAGCATAAATAATCAATTT  780

seq1  CTGTCCTATAACCAGCTTCCTTGATAGGTCATTATGCTATGATTTCTCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTATAACCAGCTTCCTTGATAGGTCATTATGCTATGATTTCTCCT  830

seq1  TCTGCAGGTTAGCAATAATAGACTTTCTGCAAGGATAATACAAATAAACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGGTTAGCAATAATAGACTTTCTGCAAGGATAATACAAATAAACT  880

seq1  GTTTATAGGGCACTTGTTTCATAAAGTATTAGAGAGTTGCCAAGTTCAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAGGGCACTTGTTTCATAAAGTATTAGAGAGTTGCCAAGTTCAAA  930

seq1  TGAAAATTTCTCTAATTTGTCTTCGGTTATATTAATGGTGGTTATGCTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTTCTCTAATTTGTCTTCGGTTATATTAATGGTGGTTATGCTTC  980

seq1  AACAATATGTGTATTTTCCAAAGCATTGCCATAATCATTCTTAATCTTAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATGTGTATTTTCCAAAGCATTGCCATAATCATTCTTAATCTTAT  1030

seq1  ACTAATGGTGTGTAAAATTCTTGTCACCTATGTAATTCCTATAGCTCTGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGGTGTGTAAAATTCTTGTCACCTATGTAATTCCTATAGCTCTGG  1080

seq1  AAATTCTGTGACCTCCCACACTCCATTCTGGGTTGGGACATTAGCCTCAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTGTGACCTCCCACACTCCATTCTGGGTTGGGACATTAGCCTCAA  1130

seq1  ATTTAATAGAAGAAAAGCCAAATTTGAATTC  1180
      |||||||||||||||||||||||||||||||
seq2  ATTTAATAGAAGAAAAGCCAAATTTGAATTC  1161