BAC Information

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BAC

Clone NameB6Ng01-192E03
Chromosome3 (Build37)
Map Location 37,552,483 - 37,734,511
singlet/doubletdoublet
Overlap geneEG381438, LOC100038875, LOC100041338, EG626367
Upstream geneTrpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1
Downstream gene4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192E03.bB6Ng01-192E03.g
ACCGA015542GA015543
length9541,171
definitionB6Ng01-192E03.b B6Ng01-192E03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,733,558 - 37,734,511)(37,552,483 - 37,553,647)
sequence
gaattcagcagaattcaagtactgaatcttctagtccataaatgtggcat
ttagttaagtctatttcaacagttctccatatttaaaagtttaccagata
gcaacattgtattgcttagcgacatcacttttctgtttcttgtgacaaca
gtaaattgtagttgagtgttctggccatctctatgctgaatgattcatta
ggtagactcaagaaaaagcacatggtcattgtcatggcctcagattgaaa
ctgcagatgggtataagagaaactcaagcacatgaaacagagtccaggag
tcagcgattctctctgaggactctcacaggggatccctaccgctcagcag
taaaccttgaagacatactcaaaatctgtgcagcagggaaacgcattaga
gaatcagtaactgctgtgtgtgcgtctcagtgcacataggttacaatagt
gcatgcatggattgcaagtgaatacatagattacagcagtgcatgcatgg
atcacagtagtgaatatatatattataacacttcacatatacattatagt
agtgtatacatgcaatcttggattttctgaattcctgatggctttcttgc
agtagagaattttcgtctttccttcagcggggttaaaaatagcacaatga
tttcatccaacagtcttttcctgtgtgctttgggtgtcaggtacagtatg
ggaagggtcaaatacttctttcctcttctgaacttactgaaaaggaagaa
ctatagacactcagaaaagcaagcactctgcatgccctactgggccccac
acagctgggtatctgtaaacagagacctgggcacaatccttctaaatttg
gtttgcagctgctagtaaatgttctcatctcaacacagattgagactcct
gctattgacaagaaaaataatctctcaatcgctctgtgtgtgtgtgtgtg
tgtg
gaattctctctacaaacgaaggcaaaataatttgggatttagaactggtc
actttttctttgatttgaaatgcttagaggtgccgtgccggagctgggat
gtctccaggttttatgaaggggtaaggcccacgtaggagttggaaagtcc
catttggaagatgatcattagcaagtgggctgatggatctccaagtgtga
gggtcagtactgtctccgatggcccagaccgtgggcagttccgttgtcca
cactgagtggaagcatgacctgcggtggctgtcatcatggggcagggagc
ctcttcaggggagctgtcctttgtgtggattgaaaaagaaggcaaatttt
ggaaagaagaaaaactggcagggctcaaaaaaaaaaagtctgttccaact
tgcctgtcttgaaaaaagaaaacccaacattcctttgagaagcagttttt
tcaaagtatttgccctggagccctccttcctactcaaccaagcttatctt
tcaaaacaaacatttactcctttctactactgagtgaggaagttcccctg
agctagtgccctacaaacagatcccagaggcaactgtcacccccacccct
ggggcaggacaaatgactaatgcaaccacaggcctggggagcccagccga
gattctgtgacaggctgctcagttcttaactgaggggaaaacacacgcag
gcaaccgtacttctgtgtgcaaattaaacctcgggtccctttcaccctgt
gggaaaatgtgtgccccgtggaaagagatgggtgacgcttggaacgcttg
tgtcatttctcctaagatgttccgggctcaaggcatggctacaagaaaag
acaaacagccatatgaaacagttcttttccagtgcaccataccaccagct
gttttctctgcctcccgccctgcgctggctgctcggtcctgctcagtgtg
gtggctgggctcccaggctccgatgtctgctttctgttttctcttccact
ttctctgcctgccgcgcataaatctattggggtggtttactctaaaacct
atagcagcacaacttttaaattcaaggtcctcgagtcacctatgtctctt
ttaatcggaatggtcattagcctaagtctgaacctcactcttgaaattgc
tcctgaagatcaatttctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_37733558_37734511
seq2: B6Ng01-192E03.b_44_997 (reverse)

seq1  CACACACACACACACACACAGAGCGATTGAGAGATTATTTTTCTTGTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACAGAGCGATTGAGAGATTATTTTTCTTGTCAA  50

seq1  TAGCAGGAGTCTCAATCTGTGTTGAGATGAGAACATTTACTAGCAGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGAGTCTCAATCTGTGTTGAGATGAGAACATTTACTAGCAGCTGC  100

seq1  AAACCAAATTTAGAAGGATTGTGCCCAGGTCTCTGTTTACAGATACCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAATTTAGAAGGATTGTGCCCAGGTCTCTGTTTACAGATACCCAG  150

seq1  CTGTGTGGGGCCCAGTAGGGCATGCAGAGTGCTTGCTTTTCTGAGTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGGGCCCAGTAGGGCATGCAGAGTGCTTGCTTTTCTGAGTGTCT  200

seq1  ATAGTTCTTCCTTTTCAGTAAGTTCAGAAGAGGAAAGAAGTATTTGACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTTCCTTTTCAGTAAGTTCAGAAGAGGAAAGAAGTATTTGACCC  250

seq1  TTCCCATACTGTACCTGACACCCAAAGCACACAGGAAAAGACTGTTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATACTGTACCTGACACCCAAAGCACACAGGAAAAGACTGTTGGAT  300

seq1  GAAATCATTGTGCTATTTTTAACCCCGCTGAAGGAAAGACGAAAATTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATTGTGCTATTTTTAACCCCGCTGAAGGAAAGACGAAAATTCTC  350

seq1  TACTGCAAGAAAGCCATCAGGAATTCAGAAAATCCAAGATTGCATGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCAAGAAAGCCATCAGGAATTCAGAAAATCCAAGATTGCATGTATA  400

seq1  CACTACTATAATGTATATGTGAAGTGTTATAATATATATATTCACTACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTATAATGTATATGTGAAGTGTTATAATATATATATTCACTACTG  450

seq1  TGATCCATGCATGCACTGCTGTAATCTATGTATTCACTTGCAATCCATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCATGCATGCACTGCTGTAATCTATGTATTCACTTGCAATCCATGC  500

seq1  ATGCACTATTGTAACCTATGTGCACTGAGACGCACACACAGCAGTTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTATTGTAACCTATGTGCACTGAGACGCACACACAGCAGTTACTG  550

seq1  ATTCTCTAATGCGTTTCCCTGCTGCACAGATTTTGAGTATGTCTTCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTAATGCGTTTCCCTGCTGCACAGATTTTGAGTATGTCTTCAAGG  600

seq1  TTTACTGCTGAGCGGTAGGGATCCCCTGTGAGAGTCCTCAGAGAGAATCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGCTGAGCGGTAGGGATCCCCTGTGAGAGTCCTCAGAGAGAATCG  650

seq1  CTGACTCCTGGACTCTGTTTCATGTGCTTGAGTTTCTCTTATACCCATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCCTGGACTCTGTTTCATGTGCTTGAGTTTCTCTTATACCCATCT  700

seq1  GCAGTTTCAATCTGAGGCCATGACAATGACCATGTGCTTTTTCTTGAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTCAATCTGAGGCCATGACAATGACCATGTGCTTTTTCTTGAGTC  750

seq1  TACCTAATGAATCATTCAGCATAGAGATGGCCAGAACACTCAACTACAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAATGAATCATTCAGCATAGAGATGGCCAGAACACTCAACTACAAT  800

seq1  TTACTGTTGTCACAAGAAACAGAAAAGTGATGTCGCTAAGCAATACAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTTGTCACAAGAAACAGAAAAGTGATGTCGCTAAGCAATACAATG  850

seq1  TTGCTATCTGGTAAACTTTTAAATATGGAGAACTGTTGAAATAGACTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATCTGGTAAACTTTTAAATATGGAGAACTGTTGAAATAGACTTAA  900

seq1  CTAAATGCCACATTTATGGACTAGAAGATTCAGTACTTGAATTCTGCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGCCACATTTATGGACTAGAAGATTCAGTACTTGAATTCTGCTGA  950

seq1  ATTC  954
      ||||
seq2  ATTC  954

seq1: chr3_37552483_37553647
seq2: B6Ng01-192E03.g_68_1238

seq1  GAATTCTCTCTACAAACGAAGGCAAAATAATTTGGGATTTAGAACTGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTACAAACGAAGGCAAAATAATTTGGGATTTAGAACTGGTC  50

seq1  ACTTTTTCTTTGATTTGAAATGCTTAGAGGTGCCGTGCCGGAGCTGGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTCTTTGATTTGAAATGCTTAGAGGTGCCGTGCCGGAGCTGGGAT  100

seq1  GTCTCCAGGTTTTATGAAGGGGTAAGGCCCACGTAGGAGTTGGAAAGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGGTTTTATGAAGGGGTAAGGCCCACGTAGGAGTTGGAAAGTCC  150

seq1  CATTTGGAAGATGATCATTAGCAAGTGGGCTGATGGATCTCCAAGTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGAAGATGATCATTAGCAAGTGGGCTGATGGATCTCCAAGTGTGA  200

seq1  GGGTCAGTACTGTCTCCGATGGCCCAGACCGTGGGCAGTTCCGTTGTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGTACTGTCTCCGATGGCCCAGACCGTGGGCAGTTCCGTTGTCCA  250

seq1  CACTGAGTGGAAGCATGACCTGCGGTGGCTGTCATCATGGGGCAGGGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGTGGAAGCATGACCTGCGGTGGCTGTCATCATGGGGCAGGGAGC  300

seq1  CTCTTCAGGGGAGCTGTCCTTTGTGTGGATTGAAAAAGAAGGCAAATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGGGGAGCTGTCCTTTGTGTGGATTGAAAAAGAAGGCAAATTTT  350

seq1  GGAAAGAAGAAAAACTGGCAGGGCTCAAAAAAAAAAAGTCTGTTCCAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAGAAAAACTGGCAGGGCTCAAAAAAAAAAAGTCTGTTCCAACT  400

seq1  TGCCTGTCTTGAAAAAAGAAAACCCAACATTCCTTTGAGAAGCAGTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTCTTGAAAAAAGAAAACCCAACATTCCTTTGAGAAGCAGTTTTT  450

seq1  TCAAAGTATTTGCCCTGGAGCCCTCCTTCCTACTCAACCAAGCTTATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTATTTGCCCTGGAGCCCTCCTTCCTACTCAACCAAGCTTATCTT  500

seq1  TCAAAACAAACATTTACTCCTTTCTACTACTGAGTGAGGAAGTTCCCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACAAACATTTACTCCTTTCTACTACTGAGTGAGGAAGTTCCCCTG  550

seq1  AGCTAGTGCCCTACAAACAGATCCCAGAGGCAACTGTCACCCCCACCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTGCCCTACAAACAGATCCCAGAGGCAACTGTCACCCCCACCCCT  600

seq1  GGGGCAGGACAAATGACTAATGCAACCACAGGCCTGGGGAGCCCAGCCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGGACAAATGACTAATGCAACCACAGGCCTGGGGAGCCCAGCCGA  650

seq1  GATTCTGTGACAGGCTGCTCAGTTCTTAACTGAGGGGAAAACACACGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGTGACAGGCTGCTCAGTTCTTAACTGAGGGGAAAACACACGCAG  700

seq1  GCAACCGTACTTCTGTGTGCAAATTAAACCTCGGGTCCCTTTCACCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCGTACTTCTGTGTGCAAATTAAACCTCGGGTCCCTTTCACCCTGT  750

seq1  -GGAAAATGTGTGCCCCGTGGAAAGAGATGGGTGACGCTTGGAACGCTTG  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAATGTGTGCCCCGTGGAAAGAGATGGGTGACGCTTGGAACGCTTG  800

seq1  TGTCATTTCTCCTAAGATGTTCCGGGCTCAAGGCATGGCTACAAG-AAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTCATTTCTCCTAAGATGTTCCGGGCTCAAGGCATGGCTACAAGAAAAG  850

seq1  ACAAACAGCCATATGAAACAGT--CTTTCCAGTGCACCATACCACCAGCT  896
      ||||||||||||||||||||||   |||||||||||||||||||||||||
seq2  ACAAACAGCCATATGAAACAGTTCTTTTCCAGTGCACCATACCACCAGCT  900

seq1  GTTTTCTCTGCCTCCCGCCCTGCGCTGGCTGCTCGGTCCTGCTCAGTGTT  946
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTTTTCTCTGCCTCCCGCCCTGCGCTGGCTGCTCGGTCCTGCTCAGTG-T  949

seq1  GGTGGCTGGGCTCCCAGGCTCCGATGTCTGCTTTCTGTTTTCTCTTCCAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTGGGCTCCCAGGCTCCGATGTCTGCTTTCTGTTTTCTCTTCCAC  999

seq1  -TTCTCTGCCTGCCGCGCATAAATCTATTGGGGTGGTTTTACTCCTAAAC  1045
       ||||||||||||||||||||||||||||||||||| |||||| ||||| 
seq2  TTTCTCTGCCTGCCGCGCATAAATCTATTGGGGTGG-TTTACT-CTAAAA  1047

seq1  CCTATAGCAGCAC-ACCTTTAAATTC-AGGTCTCGGAGGCCACCTATGTC  1093
      ||||||||||||| || ||||||||| |||||   || | ||||||||||
seq2  CCTATAGCAGCACAACTTTTAAATTCAAGGTCCTCGA-GTCACCTATGTC  1096

seq1  TC-TTTAATCGTATTGGTCTATAG-CTAAGTCTGAACCTCACTCT--GAT  1139
      || |||||||| | |||||  ||| ||||||||||||||||||||   | 
seq2  TCTTTTAATCGGAATGGTCATTAGCCTAAGTCTGAACCTCACTCTTGAAA  1146

seq1  TGGCTCCTGAGAAACCAATTTCTCTC  1165
      | |||||||| | | |||||||||||
seq2  TTGCTCCTGA-AGATCAATTTCTCTC  1171