BAC Information

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BAC

Clone NameB6Ng01-192J06
Chromosome3 (Build37)
Map Location 17,231,333 - 17,389,298
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040034, LOC100040059, EG383936, LOC622737
Downstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192J06.bB6Ng01-192J06.g
ACCGA015784GA015785
length1,1461,059
definitionB6Ng01-192J06.b B6Ng01-192J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,388,148 - 17,389,298)(17,231,333 - 17,232,387)
sequence
gaattctgtatttattctgtatttaaaaacagttaattacattgcttatt
taaaatgtataaggaaaggttataacaattctgagtgacagagaggttgc
tgacttatgcaatctatagatcgtacaggcagaaagcatcataaaattaa
gacatattaaagtcttggctaatttgaatgcaaacattatttgagcttga
tttaatgaattagccagtgctgtcatctgctctttacatttgccttcatg
tatgataggtgttttctattgtgcactatggtctgaagcataagtcaagg
agtaggataagttcaggacagaggaatcaatggttcgttatttttattaa
attatttgtatgttcctttagtaacttcattaagtgttagaaaatggaga
agtacaatcagacaatttaatccgttaaattgttggtttatgctcttgaa
ggagagagtttcatttaggctctgtgcaatatgaacatacattttcactg
gataaaatctgagatagtcacagttactaaagggaggtacagttgtgaca
gggatgagtgatcctccatgtgggccaagttggccaattctataaattat
attgatctttattcactcgttgattctctcaacatattcataatcattat
actcacctatgacacactttcctaacacattccttgaaatatttgtgaaa
tcctattgtattttgcagttgacttgttactgttaggaaatgtagatatg
attggttcaattacctatatctggaagtgtgttggtttgaataagaatgg
ttcctagaggctcatagatttgaatgcttgaccaccagggagtggcacta
ttaggaggtgtgaccttgttggagtaggtgtggctgtgttgtaataggtg
agtgcttattggaggaattgtgtcactgtgtgaaggctttagactttcag
aagctcaagccagaccccggtgtctgtttttttctgctactaaaaatttt
gctccctctgcagtaccatgtctgctatatacgcactatgacaatatgga
ctaatatttgaactggtagcatcacaattcatttatttctgttataaaag
ttggcatgatcataaatgtttcttgcaacaataagaaaccttaagt

gaattctttttcttgagcatcatatatcatatgcagataggtatttctga
ttttgatcttcagaatatggtatttataggaaggcaagtattaggactgt
gatttaaaataatggggaatatagaacaaaggtgattaataattgtgcca
tgaaaattaaatcattttgtattagagaaacgggaatataaaggaaagtt
ttcaaaataaagccttttttattaaaaataaaaatattcaatgttaatac
attttaaatactgtagaaaacaactctttcacaattaaaaataaatagca
attttatgctgatatattttagtagaataatttgcttttcgaaattttaa
gaataaaattatatccatatttctgtcataatgtaaaaatggtcatttat
aaattttggctatgcactgtggtttgttgttacagatgagtaactgaaag
taataaatgtattttaatgtttcacaatgatgtcgtatgtgtatatagtt
tataaagaagtataaaatattaaaattaggaataaatacgaacaaaagat
atgagtaataaagcctttctatatgcatcaagattgtattttattctggg
catatatttagtgcaaactgtgagcaataaatgcgtgctgtttttaaaac
acagcacaaaattagtgtgttaagagctactctacaaaaatagtgcttta
tataaaaatagtattagtaagcatgcattagtaagcattgggtcttatca
ttttaagtgaagagtttggtatatctatattacgagtaaagaaattcgag
ttactagagaatgatatatagtatgcaccatatttcacaagaatgcctct
tctcctaaagtattttaccctgtgtcttcaaaatgttattgagaaattaa
gtgtacagctactggttaccttccttaaatgcactgaaaacgtagaaatg
catttgattacatagtgtaagaactgatatttaaaattatctaatggcct
ccgaatgaaaaaaaaacctttacttgaaagaataaaagaacctgaaaatc
ttgtaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_17388148_17389298
seq2: B6Ng01-192J06.b_44_1189 (reverse)

seq1  ACTTAGGGTTTC-TATTGTTGTGAAGAAACA-TTATGATCATGCCAACTT  48
      ||||| |||||| ||||||||  |||||||| ||||||||||||||||||
seq2  ACTTAAGGTTTCTTATTGTTG-CAAGAAACATTTATGATCATGCCAACTT  49

seq1  TTATAACAGAAAATAATGAATTGTGATTGGCTTCCAGGTTCAAATATTTA  98
      ||||||||||||  |||||||||||||  ||| ||| ||||||||| |||
seq2  TTATAACAGAAATAAATGAATTGTGAT--GCTACCA-GTTCAAATA-TTA  95

seq1  GTCCATTATTGTCATAGTGCGTATATAGGCAGACATGGTACTGCAGAGGG  148
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTCCA-TATTGTCATAGTGCGTATATA-GCAGACATGGTACTGCAGAGGG  143

seq1  AGCCAAAATTTTTAGGTAGCAG-AAAAAACAGACACC-GGGTCTGGCTTG  196
      || ||||||||||| ||||||| |||||||||||||| ||||||||||||
seq2  AG-CAAAATTTTTA-GTAGCAGAAAAAAACAGACACCGGGGTCTGGCTTG  191

seq1  AGCTTCTGAAAGTCTAAAGCCTTCACACAGTGACACAATTCCTCCAATAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGAAAGTCTAAAGCCTTCACACAGTGACACAATTCCTCCAATAA  241

seq1  GCACTCACCTATTACAACACAGCCACACCTACTCCAACAAGGTCACACCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCACCTATTACAACACAGCCACACCTACTCCAACAAGGTCACACCT  291

seq1  CCTAATAGTGCCACTCCCTGGTGGTCAAGCATTCAAATCTATGAGCCTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATAGTGCCACTCCCTGGTGGTCAAGCATTCAAATCTATGAGCCTCT  341

seq1  AGGAACCATTCTTATTCAAACCAACACACTTCCAGATATAGGTAATTGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCATTCTTATTCAAACCAACACACTTCCAGATATAGGTAATTGAA  391

seq1  CCAATCATATCTACATTTCCTAACAGTAACAAGTCAACTGCAAAATACAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCATATCTACATTTCCTAACAGTAACAAGTCAACTGCAAAATACAA  441

seq1  TAGGATTTCACAAATATTTCAAGGAATGTGTTAGGAAAGTGTGTCATAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTTCACAAATATTTCAAGGAATGTGTTAGGAAAGTGTGTCATAGG  491

seq1  TGAGTATAATGATTATGAATATGTTGAGAGAATCAACGAGTGAATAAAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATAATGATTATGAATATGTTGAGAGAATCAACGAGTGAATAAAGA  541

seq1  TCAATATAATTTATAGAATTGGCCAACTTGGCCCACATGGAGGATCACTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATAATTTATAGAATTGGCCAACTTGGCCCACATGGAGGATCACTC  591

seq1  ATCCCTGTCACAACTGTACCTCCCTTTAGTAACTGTGACTATCTCAGATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGTCACAACTGTACCTCCCTTTAGTAACTGTGACTATCTCAGATT  641

seq1  TTATCCAGTGAAAATGTATGTTCATATTGCACAGAGCCTAAATGAAACTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAGTGAAAATGTATGTTCATATTGCACAGAGCCTAAATGAAACTC  691

seq1  TCTCCTTCAAGAGCATAAACCAACAATTTAACGGATTAAATTGTCTGATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCAAGAGCATAAACCAACAATTTAACGGATTAAATTGTCTGATT  741

seq1  GTACTTCTCCATTTTCTAACACTTAATGAAGTTACTAAAGGAACATACAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCTCCATTTTCTAACACTTAATGAAGTTACTAAAGGAACATACAA  791

seq1  ATAATTTAATAAAAATAACGAACCATTGATTCCTCTGTCCTGAACTTATC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTAATAAAAATAACGAACCATTGATTCCTCTGTCCTGAACTTATC  841

seq1  CTACTCCTTGACTTATGCTTCAGACCATAGTGCACAATAGAAAACACCTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCTTGACTTATGCTTCAGACCATAGTGCACAATAGAAAACACCTA  891

seq1  TCATACATGAAGGCAAATGTAAAGAGCAGATGACAGCACTGGCTAATTCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACATGAAGGCAAATGTAAAGAGCAGATGACAGCACTGGCTAATTCA  941

seq1  TTAAATCAAGCTCAAATAATGTTTGCATTCAAATTAGCCAAGACTTTAAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCAAGCTCAAATAATGTTTGCATTCAAATTAGCCAAGACTTTAAT  991

seq1  ATGTCTTAATTTTATGATGCTTTCTGCCTGTACGATCTATAGATTGCATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTAATTTTATGATGCTTTCTGCCTGTACGATCTATAGATTGCATA  1041

seq1  AGTCAGCAACCTCTCTGTCACTCAGAATTGTTATAACCTTTCCTTATACA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCAACCTCTCTGTCACTCAGAATTGTTATAACCTTTCCTTATACA  1091

seq1  TTTTAAATAAGCAATGTAATTAACTGTTTTTAAATACAGAATAAATACAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATAAGCAATGTAATTAACTGTTTTTAAATACAGAATAAATACAG  1141

seq1  AATTC  1151
      |||||
seq2  AATTC  1146


seq1: chr3_17231333_17232387
seq2: B6Ng01-192J06.g_62_1120

seq1  GAATTCTTTTTCTTGAGCATCATATATCATATGCAGATAGGTATTTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTCTTGAGCATCATATATCATATGCAGATAGGTATTTCTGA  50

seq1  TTTTGATCTTCAGAATATGGTATTTATAGGAAGGCAAGTATTAGGACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATCTTCAGAATATGGTATTTATAGGAAGGCAAGTATTAGGACTGT  100

seq1  GATTTAAAATAATGGGGAATATAGAACAAAGGTGATTAATAATTGTGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAAATAATGGGGAATATAGAACAAAGGTGATTAATAATTGTGCCA  150

seq1  TGAAAATTAAATCATTTTGTATTAGAGAAACGGGAATATAAAGGAAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTAAATCATTTTGTATTAGAGAAACGGGAATATAAAGGAAAGTT  200

seq1  TTCAAAATAAAGCCTTTTTTATTAAAAATAAAAATATTCAATGTTAATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATAAAGCCTTTTTTATTAAAAATAAAAATATTCAATGTTAATAC  250

seq1  ATTTTAAATACTGTAGAAAACAACTCTTTCACAATTAAAAATAAATAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATACTGTAGAAAACAACTCTTTCACAATTAAAAATAAATAGCA  300

seq1  ATTTTATGCTGATATATTTTAGTAGAATAATTTGCTTTTCGAAATTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGCTGATATATTTTAGTAGAATAATTTGCTTTTCGAAATTTTAA  350

seq1  GAATAAAATTATATCCATATTTCTGTCATAATGTAAAAATGGTCATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAATTATATCCATATTTCTGTCATAATGTAAAAATGGTCATTTAT  400

seq1  AAATTTTGGCTATGCACTGTGGTTTGTTGTTACAGATGAGTAACTGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTGGCTATGCACTGTGGTTTGTTGTTACAGATGAGTAACTGAAAG  450

seq1  TAATAAATGTATTTTAATGTTTCACAATGATGTCGTATGTGTATATAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATGTATTTTAATGTTTCACAATGATGTCGTATGTGTATATAGTT  500

seq1  TATAAAGAAGTATAAAATATTAAAATTAGGAATAAATACGAACAAAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGAAGTATAAAATATTAAAATTAGGAATAAATACGAACAAAAGAT  550

seq1  ATGAGTAATAAAGCCTTTCTATATGCATCAAGATTGTATTTTATTCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTAATAAAGCCTTTCTATATGCATCAAGATTGTATTTTATTCTGGG  600

seq1  CATATATTTAGTGCAAACTGTGAGCAATAAATGCGTGCTGTTTTTAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTTAGTGCAAACTGTGAGCAATAAATGCGTGCTGTTTTTAAAAC  650

seq1  ACAGCACAAAATTAGTGTGTTAAGAGCTACTCTACAAAAATAGTGCTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACAAAATTAGTGTGTTAAGAGCTACTCTACAAAAATAGTGCTTTA  700

seq1  TATAAAAATAGTATTAGTAAGCATGCATTAGTAAGCATTGGGTCTTATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAATAGTATTAGTAAGCATGCATTAGTAAGCATTGGGTCTTATCA  750

seq1  TTTTAAGTGAAGAGTTTGGTATATCTATATTACGAGTAAAGAAATTCGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTGAAGAGTTTGGTATATCTATATTACGAGTAAAGAAATTCGAG  800

seq1  TTACTAGAGAATGATATATAGTATGCACCATATTTCACAAGAATGCCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGAGAATGATATATAGTATGCACCATATTTCACAAGAATGCCTCT  850

seq1  TCTCCTAAAGTA-TTTACCCTGTGTCTTCAAAATGTTATTGAGAAA-TAA  898
      |||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  TCTCCTAAAGTATTTTACCCTGTGTCTTCAAAATGTTATTGAGAAATTAA  900

seq1  GTGTACAGCTACTGG-TACCTTCCTTAAATGCACTGAAAACGTAGAAATG  947
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTGTACAGCTACTGGTTACCTTCCTTAAATGCACTGAAAACGTAGAAATG  950

seq1  CATTTGATTACATAGTGTAAGAACTGATA-TTAAAATTATCT-ATGGC--  993
      ||||||||||||||||||||||||||||| |||||||||||| |||||  
seq2  CATTTGATTACATAGTGTAAGAACTGATATTTAAAATTATCTAATGGCCT  1000

seq1  TCGAATGAAAAAAAAACCTTTACTTGACAGATAAAAAGAAAACCTGAAAA  1043
       |||||||||||||||||||||||||| |||  |||||  |||||| |||
seq2  CCGAATGAAAAAAAAACCTTTACTTGAAAGAATAAAAG--AACCTG-AAA  1047

seq1  ATCTTGTAAAAC  1055
      ||||||||||||
seq2  ATCTTGTAAAAC  1059


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