BAC Information

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BAC

Clone NameB6Ng01-192K05
Chromosome3 (Build37)
Map Location 17,231,333 - 17,389,298
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040034, LOC100040059, EG383936, LOC622737
Downstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192K05.bB6Ng01-192K05.g
ACCGA015828GA015829
length1,1601,172
definitionB6Ng01-192K05.b B6Ng01-192K05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,388,130 - 17,389,298)(17,231,333 - 17,232,500)
sequence
gaattctgtatttattctgtatttaaaaacagttaattacattgcttatt
taaaatgtataaggaaaggttataacaattctgagtgacagagaggttgc
tgacttatgcaatctatagatcgtacaggcagaaagcatcataaaattaa
gacatattaaagtcttggctaatttgaatgcaaacattatttgagcttga
tttaatgaattagccagtgctgtcatctgctctttacatttgccttcatg
tatgataggtgttttctattgtgcactatggtctgaagcataagtcaagg
agtaggataagttcaggacagaggaatcaatggttcgttatttttattaa
attatttgtatgttcctttagtaacttcattaagtgttagaaaatggaga
agtacaatcagacaatttaatccgttaaattgttggtttatgctcttgaa
ggagagagtttcatttaggctctgtgcaatatgaacatacattttcactg
gataaaatctgagatagtcacagttactaaagggaggtacagttgtgaca
gggatgagtgatcctccatgtgggccaagttggccaattctataaattat
attgatctttattcactcgttgattctctcaacatattcataatcattat
actcacctatgacacactttcctaacacattccttgaaatatttgtgaat
cctattgtattttgcagttgacttgttactgttaggaaatgtagatatga
ttggttcaattacctatatctggaagtgtgttggtttgaataagaatggt
tcctagaggctcatagatttgaatgcttgaccaccagggagtggcactat
taggaggtgtgaccttgttggagtaggtgtggctgtgttgtaatagtgag
tgcttattggaggaattgtgtcactgtgtgaaggctttagactttcagaa
gctcagccagaccggtgtctgttttttctgctacctaaaattttggcctc
cctctgcagtaccatgtctgcctattatacccactatgacaatatggact
aaatattgaacctgggaaggcccatcacatcataatttttctgtataaaa
ggttgcatgatcatatgtttcttcacacatgaaagccttagtaagtctca
catggaggtg

gaattctttttcttgagcatcatatatcatatgcagataggtatttctga
ttttgatcttcagaatatggtatttataggaaggcaagtattaggactgt
gatttaaaataatggggaatatagaacaaaggtgattaataattgtgcca
tgaaaattaaatcattttgtattagagaaacgggaatataaaggaaagtt
ttcaaaataaagccttttttattaaaaataaaaatattcaatgttaatac
attttaaatactgtagaaaacaactctttcacaattaaaaataaatagca
attttatgctgatatattttagtagaataatttgcttttcgaaattttaa
gaataaaattatatccatatttctgtcataatgtaaaaatggtcatttat
aaattttggctatgcactgtggtttgttgttacagatgagtaactgaaag
taataaatgtattttaatgtttcacaatgatgtcgtatgtgtatatagtt
tataaagaagtataaaatattaaaattaggaataaatacgaacaaaagat
atgagtaataaagcctttctatatgcatcaagattgtattttattctggg
catatatttagtgcaaactgtgagcaataaatgcgtgctgtttttaaaac
acagcacaaaattagtgtgttaagagctactctacaaaaatagtgcttta
tataaaaatagtattagtaagcatgcattagtaagcattgggtcttatca
ttttaagtgaagagtttggtatatctatattacgagtaaagaaattcgag
ttactagagaatgatatatagtatgcaccatatttcacaagaatgcctct
tctcctaaagtatttaccctgtgtcttcaaaatgttattgagaaataagt
gtacagctactggttaccttcccttaaatgcactgaaaacgtagaaatgc
atttgattacatagttgtaagaactgatattaaaattattcttatgggct
tcgaatgaaaaaaaacctttacttgacagataaaagaaaacctgaaaaat
cttgtaaaacagaattggcatgcaagtgcttagtgagcacttatttttag
aaattagatgagtatttttatcacatgccaaagattattgcatcttatat
gaatgcaatatttggattaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_17388130_17389298
seq2: B6Ng01-192K05.b_42_1201 (reverse)

seq1  CACCTCCTGCTGAGACTTACTTAGGGTTTCTATTGTTGTGAAGAAACATT  50
      |||||||   ||||||||||| ||| |||| ||   |||||||||||| |
seq2  CACCTCCATGTGAGACTTACTAAGGCTTTC-AT--GTGTGAAGAAACA-T  46

seq1  ATGATCATGCCAACTTTTATAACAG-AAAATAATGAATTGTGATTGGC--  97
      |||||||||| | ||||||| |||| ||||| ||||  |||||| |||  
seq2  ATGATCATGCAACCTTTTAT-ACAGAAAAATTATGA--TGTGATGGGCCT  93

seq1  TTCCAGGTTCAAATATTTAGTCCATTATTGTCATAGTGCGTAT-ATAGGC  146
      | |||||||| ||||||||||||| ||||||||||||| |||| ||||||
seq2  TCCCAGGTTC-AATATTTAGTCCA-TATTGTCATAGTGGGTATAATAGGC  141

seq1  AGACATGGTACTGCAGAGGGAGCCAAAATTTTTAGGTAGCAGAAAAAACA  196
      |||||||||||||||||||||| | ||| |||||||||||||||||||||
seq2  AGACATGGTACTGCAGAGGGAGGCCAAAATTTTAGGTAGCAGAAAAAACA  191

seq1  GACACCGGGTCTGGCTTGAGCTTCTGAAAGTCTAAAGCCTTCACACAGTG  246
      |||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  GACACC-GGTCTGGC-TGAGCTTCTGAAAGTCTAAAGCCTTCACACAGTG  239

seq1  ACACAATTCCTCCAATAAGCACTCACCTATTACAACACAGCCACACCTAC  296
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACACAATTCCTCCAATAAGCACTCA-CTATTACAACACAGCCACACCTAC  288

seq1  TCCAACAAGGTCACACCTCCTAATAGTGCCACTCCCTGGTGGTCAAGCAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAAGGTCACACCTCCTAATAGTGCCACTCCCTGGTGGTCAAGCAT  338

seq1  TCAAATCTATGAGCCTCTAGGAACCATTCTTATTCAAACCAACACACTTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCTATGAGCCTCTAGGAACCATTCTTATTCAAACCAACACACTTC  388

seq1  CAGATATAGGTAATTGAACCAATCATATCTACATTTCCTAACAGTAACAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATAGGTAATTGAACCAATCATATCTACATTTCCTAACAGTAACAA  438

seq1  GTCAACTGCAAAATACAATAGGATTTCACAAATATTTCAAGGAATGTGTT  496
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTCAACTGCAAAATACAATAGGA-TTCACAAATATTTCAAGGAATGTGTT  487

seq1  AGGAAAGTGTGTCATAGGTGAGTATAATGATTATGAATATGTTGAGAGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGTGTGTCATAGGTGAGTATAATGATTATGAATATGTTGAGAGAA  537

seq1  TCAACGAGTGAATAAAGATCAATATAATTTATAGAATTGGCCAACTTGGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACGAGTGAATAAAGATCAATATAATTTATAGAATTGGCCAACTTGGC  587

seq1  CCACATGGAGGATCACTCATCCCTGTCACAACTGTACCTCCCTTTAGTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGAGGATCACTCATCCCTGTCACAACTGTACCTCCCTTTAGTAA  637

seq1  CTGTGACTATCTCAGATTTTATCCAGTGAAAATGTATGTTCATATTGCAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACTATCTCAGATTTTATCCAGTGAAAATGTATGTTCATATTGCAC  687

seq1  AGAGCCTAAATGAAACTCTCTCCTTCAAGAGCATAAACCAACAATTTAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTAAATGAAACTCTCTCCTTCAAGAGCATAAACCAACAATTTAAC  737

seq1  GGATTAAATTGTCTGATTGTACTTCTCCATTTTCTAACACTTAATGAAGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAATTGTCTGATTGTACTTCTCCATTTTCTAACACTTAATGAAGT  787

seq1  TACTAAAGGAACATACAAATAATTTAATAAAAATAACGAACCATTGATTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAGGAACATACAAATAATTTAATAAAAATAACGAACCATTGATTC  837

seq1  CTCTGTCCTGAACTTATCCTACTCCTTGACTTATGCTTCAGACCATAGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCCTGAACTTATCCTACTCCTTGACTTATGCTTCAGACCATAGTG  887

seq1  CACAATAGAAAACACCTATCATACATGAAGGCAAATGTAAAGAGCAGATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAGAAAACACCTATCATACATGAAGGCAAATGTAAAGAGCAGATG  937

seq1  ACAGCACTGGCTAATTCATTAAATCAAGCTCAAATAATGTTTGCATTCAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACTGGCTAATTCATTAAATCAAGCTCAAATAATGTTTGCATTCAA  987

seq1  ATTAGCCAAGACTTTAATATGTCTTAATTTTATGATGCTTTCTGCCTGTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCAAGACTTTAATATGTCTTAATTTTATGATGCTTTCTGCCTGTA  1037

seq1  CGATCTATAGATTGCATAAGTCAGCAACCTCTCTGTCACTCAGAATTGTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCTATAGATTGCATAAGTCAGCAACCTCTCTGTCACTCAGAATTGTT  1087

seq1  ATAACCTTTCCTTATACATTTTAAATAAGCAATGTAATTAACTGTTTTTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTTTCCTTATACATTTTAAATAAGCAATGTAATTAACTGTTTTTA  1137

seq1  AATACAGAATAAATACAGAATTC  1169
      |||||||||||||||||||||||
seq2  AATACAGAATAAATACAGAATTC  1160


seq1: chr3_17231333_17232500
seq2: B6Ng01-192K05.g_65_1236

seq1  GAATTCTTTTTCTTGAGCATCATATATCATATGCAGATAGGTATTTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTCTTGAGCATCATATATCATATGCAGATAGGTATTTCTGA  50

seq1  TTTTGATCTTCAGAATATGGTATTTATAGGAAGGCAAGTATTAGGACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATCTTCAGAATATGGTATTTATAGGAAGGCAAGTATTAGGACTGT  100

seq1  GATTTAAAATAATGGGGAATATAGAACAAAGGTGATTAATAATTGTGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAAATAATGGGGAATATAGAACAAAGGTGATTAATAATTGTGCCA  150

seq1  TGAAAATTAAATCATTTTGTATTAGAGAAACGGGAATATAAAGGAAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTAAATCATTTTGTATTAGAGAAACGGGAATATAAAGGAAAGTT  200

seq1  TTCAAAATAAAGCCTTTTTTATTAAAAATAAAAATATTCAATGTTAATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATAAAGCCTTTTTTATTAAAAATAAAAATATTCAATGTTAATAC  250

seq1  ATTTTAAATACTGTAGAAAACAACTCTTTCACAATTAAAAATAAATAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATACTGTAGAAAACAACTCTTTCACAATTAAAAATAAATAGCA  300

seq1  ATTTTATGCTGATATATTTTAGTAGAATAATTTGCTTTTCGAAATTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGCTGATATATTTTAGTAGAATAATTTGCTTTTCGAAATTTTAA  350

seq1  GAATAAAATTATATCCATATTTCTGTCATAATGTAAAAATGGTCATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAATTATATCCATATTTCTGTCATAATGTAAAAATGGTCATTTAT  400

seq1  AAATTTTGGCTATGCACTGTGGTTTGTTGTTACAGATGAGTAACTGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTGGCTATGCACTGTGGTTTGTTGTTACAGATGAGTAACTGAAAG  450

seq1  TAATAAATGTATTTTAATGTTTCACAATGATGTCGTATGTGTATATAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATGTATTTTAATGTTTCACAATGATGTCGTATGTGTATATAGTT  500

seq1  TATAAAGAAGTATAAAATATTAAAATTAGGAATAAATACGAACAAAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGAAGTATAAAATATTAAAATTAGGAATAAATACGAACAAAAGAT  550

seq1  ATGAGTAATAAAGCCTTTCTATATGCATCAAGATTGTATTTTATTCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTAATAAAGCCTTTCTATATGCATCAAGATTGTATTTTATTCTGGG  600

seq1  CATATATTTAGTGCAAACTGTGAGCAATAAATGCGTGCTGTTTTTAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTTAGTGCAAACTGTGAGCAATAAATGCGTGCTGTTTTTAAAAC  650

seq1  ACAGCACAAAATTAGTGTGTTAAGAGCTACTCTACAAAAATAGTGCTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACAAAATTAGTGTGTTAAGAGCTACTCTACAAAAATAGTGCTTTA  700

seq1  TATAAAAATAGTATTAGTAAGCATGCATTAGTAAGCATTGGGTCTTATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAATAGTATTAGTAAGCATGCATTAGTAAGCATTGGGTCTTATCA  750

seq1  TTTTAAGTGAAGAGTTTGGTATATCTATATTACGAGTAAAGAAATTCGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTGAAGAGTTTGGTATATCTATATTACGAGTAAAGAAATTCGAG  800

seq1  TTACTAGAGAATGATATATAGTATGCACCATATTTCACAAGAATGCCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGAGAATGATATATAGTATGCACCATATTTCACAAGAATGCCTCT  850

seq1  TCTCCTAAAGTATTTACCCTGTGTCTTCAAAATGTTATTGAGAAATAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAAAGTATTTACCCTGTGTCTTCAAAATGTTATTGAGAAATAAGT  900

seq1  GTACAGCTACTGG-TACCTT-CCTTAAATGCACTGAAAACGTAGAAATGC  948
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  GTACAGCTACTGGTTACCTTCCCTTAAATGCACTGAAAACGTAGAAATGC  950

seq1  ATTTGATTACATAG-TGTAAGAACTGATATTAAAATTAT--CTATGG--C  993
      |||||||||||||| ||||||||||||||||||||||||   |||||   
seq2  ATTTGATTACATAGTTGTAAGAACTGATATTAAAATTATTCTTATGGGCT  1000

seq1  TCGAATGAAAAAAAAACCTTTACTTGACAGATAAAAAGAAAACCTGAAAA  1043
      ||||||| |||||||||||||||||||||||| |||||||||||||||||
seq2  TCGAATG-AAAAAAAACCTTTACTTGACAGAT-AAAAGAAAACCTGAAAA  1048

seq1  ATCTTGTAAAACAG-ATTGGCATGCAAAGTGCTTAGTGGAAGCAC-TATT  1091
      |||||||||||||| |||||||||| ||||||||||||  ||||| ||||
seq2  ATCTTGTAAAACAGAATTGGCATGC-AAGTGCTTAGTG--AGCACTTATT  1095

seq1  TTTAGAAA-TAGATGAGTTATTTTTATCCACATG-CAAAGATTAATGCAT  1139
      |||||||| |||||||| ||||||||| |||||| ||||||||| |||||
seq2  TTTAGAAATTAGATGAG-TATTTTTAT-CACATGCCAAAGATTATTGCAT  1143

seq1  CTTATAATTGATGAAATATTT-GATTAAAA  1168
      ||||| ||  ||| ||||||| ||||||||
seq2  CTTAT-ATGAATGCAATATTTGGATTAAAA  1172


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