BAC Information

Click to search

BAC

Clone NameB6Ng01-192O06
Chromosome3 (Build37)
Map Location 90,353,372 - 90,491,797
singlet/doubletdoublet
Overlap geneEG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8
Upstream geneKcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16
Downstream geneS100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192O06.bB6Ng01-192O06.g
ACCGA016010GA016011
length1,1401,097
definitionB6Ng01-192O06.b B6Ng01-192O06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,490,637 - 90,491,797)(90,353,372 - 90,354,449)
sequence
gaattcacttttcacttgggagagcaaagggcagagtagaaaaggatgca
ggaaattctatcatcatatttgtgctttgtacaaatcaaccagaggttta
tggaataggctaggggtttaaagaggccacaggtacataaccagttagga
ggtgatggcaatggtaccatagtccaggtgagaacttaatagacctgttg
tggtgtcaacagtgcctgttaggtcagaatataaaatgtgcctcaattag
atgaggcaacctgaagctcctattgtaatgagcctgacaggaatgaagat
attgggaaaagagacttgtgtctcacagactactgaatcagtgcaccaga
caaaaatgggaattttcccacactgggagaaggaaaagctcccagccaca
gcggtactttagaagagatttcccacaattctaacactttgtcaaactac
cttacaggacgagattgaagcaggaccacatttcaacctgtgcttctgag
atgtagacatacatgacccttcacatttcaatctcacttcagggccccag
aagatggacttgggtgttcactagagccccttattcctctttgcactgtg
accatatcaaacaaatcccctctgtctgctttccaacatcaagtttacct
ttttgattggcttaaagagcatgggttgcaggacccagcttcggctcaga
ttgtaaccactaagtttgattcacaggcataaataaatttctgtaattgt
gtactgtttgccaagaccttgctaggaagaggcccctgttttaagcagtt
cagtgaggcaatcttacacaacctcaggacccaacctcagagttctcctc
accccacctccccgagttccctaaatttgtattttagaaagtactgcatt
atgaattttgacattccaattaccaagagaatagcatgaatgatgcattg
ttgctcaagcttcttgggctcatgctttgctcagaccagtaattcccagc
tgtattagagcagtcttcaagaagaccagaaatggacccaaggagagaac
cacagctcttgcagttttcctcacttctattggagtctcataactgcctt
cataccttgtatgcagtgccgaccataagtggagctagaa
gaattctgggggtctggatgagcaatgaacatcaccacatcagctgctgc
ttccttctcttccttctcttcttcctcctcctctttcttctctttccctt
cctccttatctttcttttttcatgttttgagacagtctctatataacgag
gccatttgcctacaccagcctttttttggggggggcatataattactcat
agaagtctcttataatccttttaattttcatggcatcacacccctccccc
acaacatccagaggtcttgttttgacataggattgcactccaactcagac
tggccttaaactctcagccttttgagggtttggattacaagtgtgaatca
ctgtgcccacaattactaagcctttaaaagcctgttgttagagggtctaa
gttcaagcctaaagttatgtggaggaagctgaatttttatggaggctaga
aactttagtggcagtctgggttttgcctcagggcctgaagccagagaagt
cccagagggccagatatagctaagacaaggtcagggcacttaaagctcct
tttgggaagtgtggggtgagaaaaacgctgacagagtaaactggaagagc
agatggtgcacttaaccactgagccatctctttagccctcaaaatgagtc
ttttaacaagtatattagatcacatccctcctccgctcaaaatcttagtg
tttcccagtctccccagggggaagctgaggcaggataggaaaacagggaa
tgatggcgccatatggagcaaggctgggagaggaagggacttctgatcct
ttttattactgctgagaaaggcgggactttcacactccactgagaaggat
ctaatggccgtagggaatctgtgctttattaattacatcttatcaggttt
gattgattcccagcacaacacatggtggccttgtaactattctgtgaact
tcccagttcaggattgggaggagggactgacacccttcttcttgccttct
caggacacctgttatacagtagaagcaatagacatacattgttagggcag
gtaatatatttgccctggtttagggcccagatgacccttcaacaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_90490637_90491797
seq2: B6Ng01-192O06.b_46_1185 (reverse)

seq1  TTCTGAGCTCCACTCTAAGGTCTGCACCTGCTATTTCAAGTTATGAAGGC  50
      |||| ||||||||| || |||| ||| ||||   | |||| |||||||||
seq2  TTCT-AGCTCCACT-TATGGTCGGCA-CTGC--ATACAAGGTATGAAGGC  45

seq1  AAGTTATGGAGAACTCACAATAGAAAGTGAGAAAACTTGCAAGAGGCTTG  100
       |||||| ||| |||| |||||| ||||||| |||  ||||||||   ||
seq2  -AGTTAT-GAG-ACTC-CAATAG-AAGTGAGGAAAACTGCAAGAG--CTG  88

seq1  TGGTTTCTCTCCTGGGGTCCATTTCTTGGTC-TCTTGAAGACCTGCCTCT  149
      ||| ||||||||| ||||||||||| ||||| ||||||||| ||| ||||
seq2  TGG-TTCTCTCCTTGGGTCCATTTC-TGGTCTTCTTGAAGA-CTG-CTCT  134

seq1  AATACAGCTGGGAAATTTACCTGGTCTTGAGCAAAGCATGAGCCCAAGAA  199
      ||||||||||||||  ||| |||||| |||||||||||||||||||||||
seq2  AATACAGCTGGGAA--TTA-CTGGTC-TGAGCAAAGCATGAGCCCAAGAA  180

seq1  GCTTGAGCAACAATTGCATCATTCATGCTATTCTCTTGGTAATTGGAATG  249
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGCAACAA-TGCATCATTCATGCTATTCTCTTGGTAATTGGAATG  229

seq1  TCAAAATTCATAATGCAGTACTTTCTAAAATACAAATTTTAGGGAACTCG  299
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCAAAATTCATAATGCAGTACTTTCTAAAATACAAA-TTTAGGGAACTCG  278

seq1  GGGAGGTGGGGTGAGGAGAACTCTGAGGTTGGGTCCTGAGGTTGTGTAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGGGGTGAGGAGAACTCTGAGGTTGGGTCCTGAGGTTGTGTAAG  328

seq1  ATTGCCTCACTGAACTGCTTAAAACAGGGGCCTCTTCCTAGCAAGGTCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTCACTGAACTGCTTAAAACAGGGGCCTCTTCCTAGCAAGGTCTT  378

seq1  GGCAAACAGTACACAATTACAGAAATTTATTTATGCCTGTGAATCAAACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACAGTACACAATTACAGAAATTTATTTATGCCTGTGAATCAAACT  428

seq1  TAGTGGTTACAATCTGAGCCGAAGCTGGGTCCTGCAACCCATGCTCTTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTTACAATCTGAGCCGAAGCTGGGTCCTGCAACCCATGCTCTTTA  478

seq1  AGCCAATCAAAAAGGTAAACTTGATGTTGGAAAGCAGACAGAGGGGATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATCAAAAAGGTAAACTTGATGTTGGAAAGCAGACAGAGGGGATTT  528

seq1  GTTTGATATGGTCACAGTGCAAAGAGGAATAAGGGGCTCTAGTGAACACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATATGGTCACAGTGCAAAGAGGAATAAGGGGCTCTAGTGAACACC  578

seq1  CAAGTCCATCTTCTGGGGCCCTGAAGTGAGATTGAAATGTGAAGGGTCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCATCTTCTGGGGCCCTGAAGTGAGATTGAAATGTGAAGGGTCAT  628

seq1  GTATGTCTACATCTCAGAAGCACAGGTTGAAATGTGGTCCTGCTTCAATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTCTACATCTCAGAAGCACAGGTTGAAATGTGGTCCTGCTTCAATC  678

seq1  TCGTCCTGTAAGGTAGTTTGACAAAGTGTTAGAATTGTGGGAAATCTCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCCTGTAAGGTAGTTTGACAAAGTGTTAGAATTGTGGGAAATCTCTT  728

seq1  CTAAAGTACCGCTGTGGCTGGGAGCTTTTCCTTCTCCCAGTGTGGGAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTACCGCTGTGGCTGGGAGCTTTTCCTTCTCCCAGTGTGGGAAAA  778

seq1  TTCCCATTTTTGTCTGGTGCACTGATTCAGTAGTCTGTGAGACACAAGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTTTTGTCTGGTGCACTGATTCAGTAGTCTGTGAGACACAAGTC  828

seq1  TCTTTTCCCAATATCTTCATTCCTGTCAGGCTCATTACAATAGGAGCTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCCAATATCTTCATTCCTGTCAGGCTCATTACAATAGGAGCTTC  878

seq1  AGGTTGCCTCATCTAATTGAGGCACATTTTATATTCTGACCTAACAGGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCCTCATCTAATTGAGGCACATTTTATATTCTGACCTAACAGGCA  928

seq1  CTGTTGACACCACAACAGGTCTATTAAGTTCTCACCTGGACTATGGTACC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGACACCACAACAGGTCTATTAAGTTCTCACCTGGACTATGGTACC  978

seq1  ATTGCCATCACCTCCTAACTGGTTATGTACCTGTGGCCTCTTTAAACCCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCATCACCTCCTAACTGGTTATGTACCTGTGGCCTCTTTAAACCCC  1028

seq1  TAGCCTATTCCATAAACCTCTGGTTGATTTGTACAAAGCACAAATATGAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTATTCCATAAACCTCTGGTTGATTTGTACAAAGCACAAATATGAT  1078

seq1  GATAGAATTTCCTGCATCCTTTTCTACTCTGCCCTTTGCTCTCCCAAGTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAATTTCCTGCATCCTTTTCTACTCTGCCCTTTGCTCTCCCAAGTG  1128

seq1  AAAAGTGAATTC  1161
      ||||||||||||
seq2  AAAAGTGAATTC  1140

seq1: chr3_90353372_90354449
seq2: B6Ng01-192O06.g_68_1164

seq1  GAATTCTGGGGGTCTGGATGAGCAATGAACATCACCACATCAGCTGCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGGTCTGGATGAGCAATGAACATCACCACATCAGCTGCTGC  50

seq1  TTCCTTCTCTTCCTTCTCTTCTTCCTCCTCCTCTTTCTTCTCTTTCCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTCTTCCTTCTCTTCTTCCTCCTCCTCTTTCTTCTCTTTCCCTT  100

seq1  CCTCCTTATCTTTCTTTTTTCATGTTTTGAGACAGTCTCTATATAACGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTATCTTTCTTTTTTCATGTTTTGAGACAGTCTCTATATAACGAG  150

seq1  GCCATTTGCCTACACCAGCCTTTTTTTGGGGGGGGCATATAATTACTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTGCCTACACCAGCCTTTTTTTGGGGGGGGCATATAATTACTCAT  200

seq1  AGAAGTCTCTTATAATCCTTTTAATTTTCATGGCATCACACCCCTCCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCTCTTATAATCCTTTTAATTTTCATGGCATCACACCCCTCCCCC  250

seq1  ACAACATCCAGAGGTCTTGTTTTGACATAGGATTGCACTCCAACTCAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATCCAGAGGTCTTGTTTTGACATAGGATTGCACTCCAACTCAGAC  300

seq1  TGGCCTTAAACTCTCAGCCTTTTGAGGGTTTGGATTACAAGTGTGAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTAAACTCTCAGCCTTTTGAGGGTTTGGATTACAAGTGTGAATCA  350

seq1  CTGTGCCCACAATTACTAAGCCTTTAAAAGCCTGTTGTTAGAGGGTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCCACAATTACTAAGCCTTTAAAAGCCTGTTGTTAGAGGGTCTAA  400

seq1  GTTCAAGCCTAAAGTTATGTGGAGGAAGCTGAATTTTTATGGAGGCTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGCCTAAAGTTATGTGGAGGAAGCTGAATTTTTATGGAGGCTAGA  450

seq1  AACTTTAGTGGCAGTCTGGGTTTTGCCTCAGGGCCTGAAGCCAGAGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAGTGGCAGTCTGGGTTTTGCCTCAGGGCCTGAAGCCAGAGAAGT  500

seq1  CCCAGAGGGCCAGATATAGCTAAGACAAGGTCAGGGCACTTAAAGCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGGGCCAGATATAGCTAAGACAAGGTCAGGGCACTTAAAGCTCCT  550

seq1  TTTGGGAAGTGTGGGGTGAGAAAAACGCTGACAGAGTAAACTGGAAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAAGTGTGGGGTGAGAAAAACGCTGACAGAGTAAACTGGAAGAGC  600

seq1  AGATGGTGCACTTAACCACTGAGCCATCTCTTTAGCCCTCAAAATGAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTGCACTTAACCACTGAGCCATCTCTTTAGCCCTCAAAATGAGTC  650

seq1  TTTTAACAAGTATATTAGATCACATCCCTCCTCCGCTCAAAATCTTAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACAAGTATATTAGATCACATCCCTCCTCCGCTCAAAATCTTAGTG  700

seq1  TTTCCCAGTCTCCCCAGGGGGAAGCTGAGGCAGGATAGGAAAACAGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGTCTCCCCAGGGGGAAGCTGAGGCAGGATAGGAAAACAGGGAA  750

seq1  TGATGGCGCCATATGGAGCAAGGCTGGGAGAGGAAGGGACTTCTGATCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCGCCATATGGAGCAAGGCTGGGAGAGGAAGGGACTTCTGATCCT  800

seq1  TTTTATTACTGCTGAGAAAGGCGGGGACTTCACACTCCACTGAGAAGGAT  850
      |||||||||||||||||||||||||   ||||||||||||||||||||||
seq2  TTTTATTACTGCTGAGAAAGGCGGGACTTTCACACTCCACTGAGAAGGAT  850

seq1  CTAATGGCCGTAGGGAATCTGTGCTTTAT--AATACATCTTATCCAGGTT  898
      |||||||||||||||||||||||||||||  | |||||||||| ||||||
seq2  CTAATGGCCGTAGGGAATCTGTGCTTTATTAATTACATCTTAT-CAGGTT  899

seq1  TGATTGATTCCCAGCAC-ACACATGGTGG-CTTGTAACTA-TCTGTGAAC  945
      ||||||||||||||||| ||||||||||| |||||||||| |||||||||
seq2  TGATTGATTCCCAGCACAACACATGGTGGCCTTGTAACTATTCTGTGAAC  949

seq1  -TCCCAGTTCAGGATT-GGAGGA-GGACTGACACCC-TCTTCTTGCC-TC  990
       ||||||||||||||| |||||| |||||||||||| |||||||||| ||
seq2  TTCCCAGTTCAGGATTGGGAGGAGGGACTGACACCCTTCTTCTTGCCTTC  999

seq1  TCAGGACA-CTG-TATACAAGTAG-AGC-ATAGACATACA-TGT--AGGC  1033
      |||||||| ||| ||||| ||||| ||| ||||||||||| |||   |||
seq2  TCAGGACACCTGTTATAC-AGTAGAAGCAATAGACATACATTGTTAGGGC  1048

seq1  AGTAAATA-AATTGCCCT-GTTTA-GGCCCAGATGA-CCTCCAACAAGG  1078
      ||  |||| | ||||||| ||||| ||||||||||| ||| ||||||||
seq2  AGGTAATATATTTGCCCTGGTTTAGGGCCCAGATGACCCTTCAACAAGG  1097