BAC Information

Click to search

BAC

Clone NameB6Ng01-192P13
Chromosome3 (Build37)
Map Location 35,134,686 - 35,307,825
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665636, EG622074, Sox2, LOC100041108
Downstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192P13.bB6Ng01-192P13.g
ACCGA016072GA016073
length1,110582
definitionB6Ng01-192P13.b B6Ng01-192P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,134,686 - 35,135,782)(35,307,244 - 35,307,825)
sequence
gaattcaacaagttcacatgtatgatgtaatttataacttcatttccctc
cagagccctggagcaaaatgtcaccttctgccagcgtggtaatttaaaat
aagaggggggtcattgtccctatagtaacagagtctcgttttacacatcg
gccattcccaacctgctactaaattactaagagtttgaggacacatggca
gagcaccggacagatgctgctgaagaggaaaccaaacaccagccacttaa
aatatgctgcgtcagcttgaaaataagactgaaataagccccttacttgc
ccagcctcacccctttagccactatctagcaactgttaaagtctttagaa
ccaaactccacaccctcagtttacacagcaaaaaatacttctgggaatca
cagttgactttctagcatgattatggtctggccataggagtattctctat
tatgctaaaaaatacacgtcttgcctttttttttttttttttttttttta
catcttctttgttctctgtattaaggctcagcacctagacagattctcta
agcagcaattgtctattagctacaagaagtaacatttcttcagaccatca
aagagtccaggaggctgggaatgattttttttttctctccatcaaggttt
tcaaagggtcgtctgagagaattgggacagactgtattcccaactagcag
ggaatcgcttttcagtgtcctgccaggaggaatcagtccttagaaattta
aagtttcacctgacagagcccaggcctgcagagcctcaatttatctgctc
ttagaggaagagcttggaagcacaagctgaaggcaccgggtcctttgttt
ccatggtgaggttctcaaagagctacagaacattcaattctggcactgca
gctatgggctggcgggtatatttaagaacctttctttacattattacaaa
gccggcaccgaagcactggttcgtgtgcctgttaacttaagacaaagtca
tcctgggaatgaccactgtaagaatacctttagcttggaaagttgaaggc
atgttaggttcactaatggcaagcgatgggtttgagctagaccgtctttg
gggtctgtct

gaattcctggtaagcggccagttacagaaagcctgggtctagaaggatgg
gtcccaaggcagatgggaaacgcctcgcctttggatgagttgtcctattg
acgtcagcagtgtggcgttatgccccagctcttagtggaacaaggaatcc
ccctgaagggggccttgcgccctccccgcttggaaatgtgacagaaagaa
gacagagtggtagagactttggaacagtttttcatccatgctttccaaga
gtcagtctaaaactctttattattattattattgtcacgggtgtagctag
actgtggagtgctggaacactcttactccgggcagcatggaaaaatctac
aagccagcttctcagcagcgaccaacagtattttgtttcctgctctgagc
cacctatcgcaggcaccaaggcaaaccatgtaaagttagcatgtagggag
ctacagagaggaaggacaacagccagcttaatgacaaactgggagtccgt
actggatggcaggatgatttgtgaacccaccgaaaggaagcgatgtgctc
actgtgtggtgatggtggtggtagtagtggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_35134686_35135782
seq2: B6Ng01-192P13.b_45_1154

seq1  GAATTCAACAAGTTCACATGTATGATGTAATTTATAACTTCATTTCCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAAGTTCACATGTATGATGTAATTTATAACTTCATTTCCCTC  50

seq1  CAGAGCCCTGGAGCAAAATGTCACCTTCTGCCAGCGTGGTAATTTAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCCTGGAGCAAAATGTCACCTTCTGCCAGCGTGGTAATTTAAAAT  100

seq1  AAGAGGGGGGTCATTGTCCCTATAGTAACAGAGTCTCGTTTTACACATCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGGGGTCATTGTCCCTATAGTAACAGAGTCTCGTTTTACACATCG  150

seq1  GCCATTCCCAACCTGCTACTAAATTACTAAGAGTTTGAGGACACATGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCCCAACCTGCTACTAAATTACTAAGAGTTTGAGGACACATGGCA  200

seq1  GAGCACCGGACAGATGCTGCTGAAGAGGAAACCAAACACCAGCCACTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCGGACAGATGCTGCTGAAGAGGAAACCAAACACCAGCCACTTAA  250

seq1  AATATGCTGCGTCAGCTTGAAAATAAGACTGAAATAAGCCCCTTACTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCTGCGTCAGCTTGAAAATAAGACTGAAATAAGCCCCTTACTTGC  300

seq1  CCAGCCTCACCCCTTTAGCCACTATCTAGCAACTGTTAAAGTCTTTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCACCCCTTTAGCCACTATCTAGCAACTGTTAAAGTCTTTAGAA  350

seq1  CCAAACTCCACACCCTCAGTTTACACAGCAAAAAATACTTCTGGGAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTCCACACCCTCAGTTTACACAGCAAAAAATACTTCTGGGAATCA  400

seq1  CAGTTGACTTTCTAGCATGATTATGGTCTGGCCATAGGAGTATTCTCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGACTTTCTAGCATGATTATGGTCTGGCCATAGGAGTATTCTCTAT  450

seq1  TATGCTAAAAAATACACGTCTTGCCTTTTTTTTTTTTTTTTTTTTTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTAAAAAATACACGTCTTGCCTTTTTTTTTTTTTTTTTTTTTTTTA  500

seq1  CATCTTCTTTGTTCTCTGTATTAAGGCTCAGCACCTAGACAGATTCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTTTGTTCTCTGTATTAAGGCTCAGCACCTAGACAGATTCTCTA  550

seq1  AGCAGCAATTGTCTATTAGCTACAAGAAGTAACATTTCTTCAGACCATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAATTGTCTATTAGCTACAAGAAGTAACATTTCTTCAGACCATCA  600

seq1  AAGAGTCCAGGAGGCTGGGAATGATTTTTTTTTTCTCTCCATCAAGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCCAGGAGGCTGGGAATGATTTTTTTTTTCTCTCCATCAAGGTTT  650

seq1  TCAAAGGGTCGTCTGAGAGAATTGGGACAGACTGTATTCCCAACTAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGGTCGTCTGAGAGAATTGGGACAGACTGTATTCCCAACTAGCAG  700

seq1  GGAATCGCTTTTCAGTGTCCTGCCAGGAGGAATCAGTCCTTAGAAATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCGCTTTTCAGTGTCCTGCCAGGAGGAATCAGTCCTTAGAAATTTA  750

seq1  AAGTTTCACCTGACAGAGCCCAGGCCTGCAGGAGCCTCAATTTATCTGCT  800
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGTTTCACCTGACAGAGCCCAGGCCTGCA-GAGCCTCAATTTATCTGCT  799

seq1  C-TAGAGGAAGAGCTTGGAAGCACAAGCTGAAGGCACC-GGTCCTTTGTT  848
      | |||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTAGAGGAAGAGCTTGGAAGCACAAGCTGAAGGCACCGGGTCCTTTGTT  849

seq1  TCCATGGTGAGGTTTCCAAAGAGCTACAGAACATTCAATTCTGCCACTGC  898
      ||||||||||||||  ||||||||||||||||||||||||||| ||||||
seq2  TCCATGGTGAGGTTCTCAAAGAGCTACAGAACATTCAATTCTGGCACTGC  899

seq1  AGCTATGGGCT-GCGGGTATATTTAAGAACC-TTCCTTACATTATCACAA  946
      ||||||||||| ||||||||||||||||||| ||| ||||||||| ||||
seq2  AGCTATGGGCTGGCGGGTATATTTAAGAACCTTTCTTTACATTATTACAA  949

seq1  AGGC-GCA-CGAAGCACTGGT---CGTGCCTG-TAACTAGGAACAAGGTC  990
      || | ||| ||||||||||||    ||||||| |||||    |||| |||
seq2  AGCCGGCACCGAAGCACTGGTTCGTGTGCCTGTTAACTTAAGACAAAGTC  999

seq1  ATCCTGGG-ATGA-CACTGTA--GATAC--TTAGCTTGAAAGGTTGTAGG  1034
      |||||||| |||| |||||||   ||||  |||||||| || |||| |||
seq2  ATCCTGGGAATGACCACTGTAAGAATACCTTTAGCTTGGAAAGTTGAAGG  1049

seq1  CATGTTAAGTTCACTAATGTGAAAAGCGAAGGGGTTGAGCCAGACAGTCC  1084
      ||||||| |||||||||  ||  |||||| ||| |||||| |||| ||| 
seq2  CATGTTAGGTTCACTAA--TGGCAAGCGATGGGTTTGAGCTAGACCGTCT  1097

seq1  TTGGGGTCTGTCT  1097
      |||||||||||||
seq2  TTGGGGTCTGTCT  1110


seq1: chr3_35307244_35307825
seq2: B6Ng01-192P13.g_67_648 (reverse)

seq1  TCCCACTACTACCACCACCATCACCACACAGTGAGCACATCGCTTCCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTACTACCACCACCATCACCACACAGTGAGCACATCGCTTCCTTT  50

seq1  CGGTGGGTTCACAAATCATCCTGCCATCCAGTACGGACTCCCAGTTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGGTTCACAAATCATCCTGCCATCCAGTACGGACTCCCAGTTTGTC  100

seq1  ATTAAGCTGGCTGTTGTCCTTCCTCTCTGTAGCTCCCTACATGCTAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCTGGCTGTTGTCCTTCCTCTCTGTAGCTCCCTACATGCTAACTT  150

seq1  TACATGGTTTGCCTTGGTGCCTGCGATAGGTGGCTCAGAGCAGGAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGTTTGCCTTGGTGCCTGCGATAGGTGGCTCAGAGCAGGAAACAA  200

seq1  AATACTGTTGGTCGCTGCTGAGAAGCTGGCTTGTAGATTTTTCCATGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGTTGGTCGCTGCTGAGAAGCTGGCTTGTAGATTTTTCCATGCTG  250

seq1  CCCGGAGTAAGAGTGTTCCAGCACTCCACAGTCTAGCTACACCCGTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGAGTAAGAGTGTTCCAGCACTCCACAGTCTAGCTACACCCGTGACA  300

seq1  ATAATAATAATAATAAAGAGTTTTAGACTGACTCTTGGAAAGCATGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAATAATAAAGAGTTTTAGACTGACTCTTGGAAAGCATGGATG  350

seq1  AAAAACTGTTCCAAAGTCTCTACCACTCTGTCTTCTTTCTGTCACATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTGTTCCAAAGTCTCTACCACTCTGTCTTCTTTCTGTCACATTTC  400

seq1  CAAGCGGGGAGGGCGCAAGGCCCCCTTCAGGGGGATTCCTTGTTCCACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCGGGGAGGGCGCAAGGCCCCCTTCAGGGGGATTCCTTGTTCCACTA  450

seq1  AGAGCTGGGGCATAACGCCACACTGCTGACGTCAATAGGACAACTCATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGGGCATAACGCCACACTGCTGACGTCAATAGGACAACTCATCC  500

seq1  AAAGGCGAGGCGTTTCCCATCTGCCTTGGGACCCATCCTTCTAGACCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCGAGGCGTTTCCCATCTGCCTTGGGACCCATCCTTCTAGACCCAG  550

seq1  GCTTTCTGTAACTGGCCGCTTACCAGGAATTC  582
      ||||||||||||||||||||||||||||||||
seq2  GCTTTCTGTAACTGGCCGCTTACCAGGAATTC  582


| Home | SequenceCutter | Blast | Download |