BAC Information

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BAC

Clone NameB6Ng01-193A22
Chromosome3 (Build37)
Map Location 123,764,650 - 123,845,761
singlet/doubletdoublet
Overlap genenone
Upstream geneSynpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
Downstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817, LOC668820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193A22.bB6Ng01-193A22.g
ACCGA016135GA016136
length1,0541,051
definitionB6Ng01-193A22.b B6Ng01-193A22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,844,695 - 123,845,761)(123,764,650 - 123,765,701)
sequence
gaattcacttataagaactttttaattttttacacaaaaagtaagattct
cttctcaaacacctacagcaacaaaaatgtaagttttactcccttcttat
ctaaactttgagtatttgaaacctcaatgtcttctgaactgtaccttgtg
atgtactttaaagtgaaactcttcctgttttatgctttaagactgttgtt
agagtaaataaaccaataacaaacttcacaggttcatcacattgtatatc
actcattgatcaactgatttaaagttagtctttcatactctaaggatttg
agaagcgtgttctcttttttcagaaaccaccggggctgctcccaaagaca
gagggctccctagtctcttctgacaagttgtgtaatgttagctgtagtag
ccgacacccttgaattcttacattttcatcaatgaaatggggcttatcat
aattactgcaaataattttgttaaaattacatttaactagtcaaataaaa
ttatagcatattctgtggtacaaaaaaagaatctcagagactagagaact
ctaaatttagctgttacctcagacttggattccagcactcttacaagatt
taagattttctcaccaaacaaatattgactacttagtaccataattcatg
aaaataagattagttctatcctggaatttattttctttacactgatattt
atttttggaaaatgctgttagtgtctaaggaattttgtaagttcttgaat
gtcctcagaccatgggaaaacagagtttagagtccaagtgtatggccaaa
gcatgcataatgccattctacacaaaatcaaacaaaacaaaaacaaaaac
aaaaaaccaaaacaaacaaacaacaaaagacttagaaaccactgttcctc
ctataagaacgaaggatgtgtactcccacagagtaaagttaacataaaag
caatacactaccctggtgagaataaatgatttgtagctcttaaaagtcct
caattcaaacaaaggcttctgtgaaatttctatcagttagcaaataactg
tatc
gaattcatcagttttaaatgctttaaagtcattcagcttccatttcaagc
tgaaaccatttcttccttaaaagtggatggtgcagcaatggacataataa
agaaatacgtggtcacagtctgtgagggataagttgccaacacttaaagc
taatacctggaacctcatatcttactcaaccctctgtgtgctgagctttt
ttttttttttgatgcataaacatccatgataaaatatgctgtgtcagaca
catgcaagaagattaataaaaaataaaaaatgacaaactaggacacattg
aaatgtgcaaactcaaaagagagtgtgctgagtaaaatcaatggaagaga
aaaggatgtggtatggaacatgcttcatgtacaatatacatttgcttaaa
atatccttttgtaatataaacccatgtgcaataaatgtcatgttaaaaaa
tttaaaaatcataataaaatatttaaagtttatttaagtgaatttttaaa
tcttttatacttaatgtttttgtgagccaatgttgaccacatgtacctga
atcccacacatgcagtgctgtaggtgagatgcgattagtgtaaatgacac
tgtgaacatggctgtggcaaaaatctatgtggagaacaggtttctcacat
cagatagatgaactgaggggataagagtgagaagacttcataaaaatggt
aatttcaccggtcttcattaattactcagaaatatctggttctttcacca
ttatcacttgtagaaaataaaagtctttatgtatgtggagcatacttgca
ttgtgtaaacttcagttgtgtgtttttaatcccatgtacatgtatgtgtt
agagagaaactgttgtgttgaggataaagagtttgtcactaattcaaggt
tctttatcacactgggggaggagactatcattattgttacttgtaagttt
atcgaatgcacacttaatggtttccattgcaacttctagcattctgcttt
tacttgttttatattattactgttaaatttatgtagcattactcattgaa
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_123844695_123845761
seq2: B6Ng01-193A22.b_31_1084 (reverse)

seq1  GATACAGGTAATTTGCTACCTTGATAGGAAATTTTCCAACAGAAGCCTTT  50
      |||||| || |||||||| | ||||| |||||||    ||||||||| ||
seq2  GATACA-GTTATTTGCTAAC-TGATA-GAAATTT---CACAGAAGCC-TT  43

seq1  TGTTTGATTGGAGGACTTTTAGGAAGCTACAAATCATTTATTCTCACCAG  100
      ||||||| | ||||||||||| | ||||||||||||||||||||||||||
seq2  TGTTTGAATTGAGGACTTTTAAG-AGCTACAAATCATTTATTCTCACCAG  92

seq1  GGTAGTGTA-TGC-TTTATGTTAACTTTTACTCTGT-GGAGTACACATCC  147
      ||||||||| ||| ||||||||||| |||||||||| |||||||||||||
seq2  GGTAGTGTATTGCTTTTATGTTAAC-TTTACTCTGTGGGAGTACACATCC  141

seq1  TTCGTTCTTAATAGGAGGAACAGTGGTTTTCTAAGTTCTTTTTGTTTGTT  197
      ||||||||| |||||||||||||||| |||||||| ||||||   |||||
seq2  TTCGTTCTT-ATAGGAGGAACAGTGG-TTTCTAAG-TCTTTT--GTTGTT  186

seq1  TGTTTGTTTTGGTTTTTTGTTTTTGTTTTTTGTTTTGTTTTGATTTTGTG  247
      ||||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  TGTTTGTTTTGGTTTTTTGTTTTTG-TTTTTGTTTTG-TTTGATTTTGTG  234

seq1  TAGAATGGCATTATGCATGCTTTGGCCATACACTTGGACTCTAAACTCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGGCATTATGCATGCTTTGGCCATACACTTGGACTCTAAACTCTG  284

seq1  TTTTCCCATGGTCTGAGGACATTCAAGAACTTACAAAATTCCTTAGACAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCATGGTCTGAGGACATTCAAGAACTTACAAAATTCCTTAGACAC  334

seq1  TAACAGCATTTTCCAAAAATAAATATCAGTGTAAAGAAAATAAATTCCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCATTTTCCAAAAATAAATATCAGTGTAAAGAAAATAAATTCCAG  384

seq1  GATAGAACTAATCTTATTTTCATGAATTATGGTACTAAGTAGTCAATATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAACTAATCTTATTTTCATGAATTATGGTACTAAGTAGTCAATATT  434

seq1  TGTTTGGTGAGAAAATCTTAAATCTTGTAAGAGTGCTGGAATCCAAGTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGTGAGAAAATCTTAAATCTTGTAAGAGTGCTGGAATCCAAGTCT  484

seq1  GAGGTAACAGCTAAATTTAGAGTTCTCTAGTCTCTGAGATTCTTTTTTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAACAGCTAAATTTAGAGTTCTCTAGTCTCTGAGATTCTTTTTTTG  534

seq1  TACCACAGAATATGCTATAATTTTATTTGACTAGTTAAATGTAATTTTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAGAATATGCTATAATTTTATTTGACTAGTTAAATGTAATTTTAA  584

seq1  CAAAATTATTTGCAGTAATTATGATAAGCCCCATTTCATTGATGAAAATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTATTTGCAGTAATTATGATAAGCCCCATTTCATTGATGAAAATG  634

seq1  TAAGAATTCAAGGGTGTCGGCTACTACAGCTAACATTACACAACTTGTCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATTCAAGGGTGTCGGCTACTACAGCTAACATTACACAACTTGTCA  684

seq1  GAAGAGACTAGGGAGCCCTCTGTCTTTGGGAGCAGCCCCGGTGGTTTCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGACTAGGGAGCCCTCTGTCTTTGGGAGCAGCCCCGGTGGTTTCTG  734

seq1  AAAAAAGAGAACACGCTTCTCAAATCCTTAGAGTATGAAAGACTAACTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAGAACACGCTTCTCAAATCCTTAGAGTATGAAAGACTAACTTT  784

seq1  AAATCAGTTGATCAATGAGTGATATACAATGTGATGAACCTGTGAAGTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGTTGATCAATGAGTGATATACAATGTGATGAACCTGTGAAGTTT  834

seq1  GTTATTGGTTTATTTACTCTAACAACAGTCTTAAAGCATAAAACAGGAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGGTTTATTTACTCTAACAACAGTCTTAAAGCATAAAACAGGAAG  884

seq1  AGTTTCACTTTAAAGTACATCACAAGGTACAGTTCAGAAGACATTGAGGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCACTTTAAAGTACATCACAAGGTACAGTTCAGAAGACATTGAGGT  934

seq1  TTCAAATACTCAAAGTTTAGATAAGAAGGGAGTAAAACTTACATTTTTGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATACTCAAAGTTTAGATAAGAAGGGAGTAAAACTTACATTTTTGT  984

seq1  TGCTGTAGGTGTTTGAGAAGAGAATCTTACTTTTTGTGTAAAAAATTAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAGGTGTTTGAGAAGAGAATCTTACTTTTTGTGTAAAAAATTAAA  1034

seq1  AAGTTCTTATAAGTGAATTC  1067
      ||||||||||||||||||||
seq2  AAGTTCTTATAAGTGAATTC  1054

seq1: chr3_123764650_123765701
seq2: B6Ng01-193A22.g_63_1113

seq1  GAATTCATCAGTTTTAAATGCTTTAAAGTCATTCAGCTTCCATTTCAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGTTTTAAATGCTTTAAAGTCATTCAGCTTCCATTTCAAGC  50

seq1  TGAAACCATTTCTTCCTTAAAAGTGGATGGTGCAGCAATGGACATAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCATTTCTTCCTTAAAAGTGGATGGTGCAGCAATGGACATAATAA  100

seq1  AGAAATACGTGGTCACAGTCTGTGAGGGATAAGTTGCCAACACTTAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATACGTGGTCACAGTCTGTGAGGGATAAGTTGCCAACACTTAAAGC  150

seq1  TAATACCTGGAACCTCATATCTTACTCAACCCTCTGTGTGCTGAGCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCTGGAACCTCATATCTTACTCAACCCTCTGTGTGCTGAGCTTTT  200

seq1  TTTTTTTTTTGATGCATAAACATCCATGATAAAATATGCTGTGTCAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGATGCATAAACATCCATGATAAAATATGCTGTGTCAGACA  250

seq1  CATGCAAGAAGATTAATAAAAAATAAAAAATGACAAACTAGGACACATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAGAAGATTAATAAAAAATAAAAAATGACAAACTAGGACACATTG  300

seq1  AAATGTGCAAACTCAAAAGAGAGTGTGCTGAGTAAAATCAATGGAAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGCAAACTCAAAAGAGAGTGTGCTGAGTAAAATCAATGGAAGAGA  350

seq1  AAAGGATGTGGTATGGAACATGCTTCATGTACAATATACATTTGCTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGTGGTATGGAACATGCTTCATGTACAATATACATTTGCTTAAA  400

seq1  ATATCCTTTTGTAATATAAACCCATGTGCAATAAATGTCATGTTAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTTTTGTAATATAAACCCATGTGCAATAAATGTCATGTTAAAAAA  450

seq1  TTTAAAAATCATAATAAAATATTTAAAGTTTATTTAAGTGAATTTTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATCATAATAAAATATTTAAAGTTTATTTAAGTGAATTTTTAAA  500

seq1  TCTTTTATACTTAATGTTTTTGTGAGCCAATGTTGACCACATGTACCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATACTTAATGTTTTTGTGAGCCAATGTTGACCACATGTACCTGA  550

seq1  ATCCCACACATGCAGTGCTGTAGGTGAGATGCGATTAGTGTAAATGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACACATGCAGTGCTGTAGGTGAGATGCGATTAGTGTAAATGACAC  600

seq1  TGTGAACATGGCTGTGGCAAAAATCTATGTGGAGAACAGGTTTCTCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACATGGCTGTGGCAAAAATCTATGTGGAGAACAGGTTTCTCACAT  650

seq1  CAGATAGATGAACTGAGGGGATAAGAGTGAGAAGACTTCATAAAAATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGATGAACTGAGGGGATAAGAGTGAGAAGACTTCATAAAAATGGT  700

seq1  AATTTCACCGGTCTTCATTAATTACTCAGAAATATCTGGTTCTTTCACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCACCGGTCTTCATTAATTACTCAGAAATATCTGGTTCTTTCACCA  750

seq1  TTATCACTTGTAGAAAATAAAAGTCTTTATGTATGTGGAGCATACTTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACTTGTAGAAAATAAAAGTCTTTATGTATGTGGAGCATACTTGCA  800

seq1  TTGTGTAAACTTCAGTTGTGTGTTTTTAATCCCATGTACATGTATGTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAAACTTCAGTTGTGTGTTTTTAATCCCATGTACATGTATGTGTT  850

seq1  AGAGAGAAACTGTTGTGTTGAGGATAAAAGAGTTTGTCACTAATTCAA-G  899
      ||||||||||||||||||||||||| |||||||||||||||||||||| |
seq2  AGAGAGAAACTGTTGTGTTGAGGAT-AAAGAGTTTGTCACTAATTCAAGG  899

seq1  TTC-TTATCACACT-GGGGAGGAGACTATCAATTATG-TACTTGTAAGTT  946
      ||| |||||||||| |||||||||||||||| |  || ||||||||||||
seq2  TTCTTTATCACACTGGGGGAGGAGACTATCATTATTGTTACTTGTAAGTT  949

seq1  TAATCGAATGCACAC-TAATGG-TTCCATTGCAAACTCTAGCATTCTGCT  994
      | ||||||||||||| |||||| |||||||||||  ||||||||||||||
seq2  T-ATCGAATGCACACTTAATGGTTTCCATTGCAACTTCTAGCATTCTGCT  998

seq1  TTTACTTTGTTTTATAATTATTACTGTTTAAAATTTTATGTAGCATTTAC  1044
      ||||| ||||||||| ||||||||||||   || ||||||||||| ||||
seq2  TTTAC-TTGTTTTAT-ATTATTACTGTT---AAATTTATGTAGCA-TTAC  1042

seq1  TCA-TGAAA  1052
      ||| |||||
seq2  TCATTGAAA  1051