BAC Information

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BAC

Clone NameB6Ng01-193F02
Chromosome3 (Build37)
Map Location 117,843,772 - 117,987,035
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC674908, D3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneDpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193F02.bB6Ng01-193F02.g
ACCGA016322GA016323
length1,0581,093
definitionB6Ng01-193F02.b B6Ng01-193F02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,843,772 - 117,844,834)(117,985,942 - 117,987,035)
sequence
gaattcacctttttttttttagtgctctaactcactagaatctagtgcaa
tgtgggtcaatatatacgaggcgaaaaaccaaaccaaggaagcatctaca
aatgctgtgacatacatcgcttttgcttcccatgtgtgaatttacatgct
ccttctctacgagtttgttttaatcccctcgagtcttgaaagcatctcct
atgggagtgtaatttttttctctcccgctctctttacaacttagaaaatt
tgacccactttaaagttaagttctcattttatttttttttcctagaaact
aaaattagatgtttggatttctttttaataaacacaaacattcaggagtg
aggcttgtgcctgagcaacagcttctgttctataattggcatttcccccc
tttctgatgactcagacagctgaatttagaaaccttttactaaccatatt
gctaatcctaatattatacttttaacgtttttatttttttaacacacatt
ttaaacagtgaaagaaaaaagccctggctattgcaagggacccagaagag
caggagtcacgttgattcttgacctgtgagaagatgaaaaggacaagagg
tccctggaatgacagtggcctcacccatgtctgaaaagccccgaacctgc
attctgttaaccttgatggggtggaaacatgcaatatatgttccggaagt
gttaacggaggaaaagcaagggtgaaaggagtcagtacggaccacactct
tctaacgtgcaaaagcaggctgagggttttcatttgagatactcaaaact
ggaaaaagaatgaaagctttgtcagtgtaaaccttaaaatgaagcatgct
tgacgccaattcaaatatactgccacttccacttattttgcgttagcgac
tgttatttctttttttttaagaaaaaaaaaagaaagcttatttaaattgt
tctttatcatctgcttgtcctaaaaaacgagacctagagattgatgatga
ctggcagctctcagcagcaaactgggaagagagctagctaagcttgtgcc
tcattatg
gaattcattctgcttcttaaacatctttctggtccaaacacatttgatga
ccttcacttgtttatagcctcacccattctgttgttatcttgatctggaa
ttctgtcatagcttcttattgcaactgttacatcttctccccagattcat
ttccatcaagtcttaacagagcaggcaagccttatggtcaaccctcttga
caacatgactaagttgtggtgtattttcaaatggagtagaactaaatact
agatataagtaacataggatatagagataaatgatagcaattaaagcatt
ccaaatttgttctactagatagcaactaattaaatccatgtactgtattt
ggagagttactgagggaggggttttctatgccatgaagcaatgttcagtg
aaactaattccctggtataaattttcaataaagctgatgaaagtgctata
tgctaattagtcttaaaatggaaagaacatttttaaacttaattaacact
atgttgttttctgtgcactgttgacagagaccaagttgtacagggaactt
ccattatgaatgctacacttactatacaagctaagtgtggcctttcacat
tgtgaatccatattttcccctgaaagagtctcatgaagattaaattttat
tcaaagaaagaaatatcattagtgaagaattagaatggttaggctcaaaa
gaaaagcagtaggtattcttttaactccataaatctttctataatgttat
aattgtagggcatcttggtcacaaggtatgtacctgttggtatctttgtt
ctgtatataaagatagaggccttctgtaggattagtactcacattaccac
agaatgtttcttgttctgtttgactttgttttacttctgggcaactctgt
catggtgctgaaacttccactttcctccccattcttgattttaaactagt
catcaggatgtagcaagaattgcgtataaaaagtatgctgccttatgaga
aagaactggggttaccttcccttcgtgtctcttgactacttgcatctttc
catgaaacaggttctttggttgggttaggtaggactggcaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117843772_117844834
seq2: B6Ng01-193F02.b_44_1101

seq1  GAATTCACCTTTTTTTTTTTAGTGCTCTAACTCACTAGAATCTAGTGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTTTTTTTTTTAGTGCTCTAACTCACTAGAATCTAGTGCAA  50

seq1  TGTGGGTCAATATATACGAGGCGAAAAACCAAACCAAGGAAGCATCTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTCAATATATACGAGGCGAAAAACCAAACCAAGGAAGCATCTACA  100

seq1  AATGCTGTGACATACATCGCTTTTGCTTCCCATGTGTGAATTTACATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGTGACATACATCGCTTTTGCTTCCCATGTGTGAATTTACATGCT  150

seq1  CCTTCTCTACGAGTTTGTTTTAATCCCCTCGAGTCTTGAAAGCATCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTACGAGTTTGTTTTAATCCCCTCGAGTCTTGAAAGCATCTCCT  200

seq1  ATGGGAGTGTAATTTTTTTCTCTCCCGCTCTCTTTACAACTTAGAAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGTGTAATTTTTTTCTCTCCCGCTCTCTTTACAACTTAGAAAATT  250

seq1  TGACCCACTTTAAAGTTAAGTTCTCATTTTATTTTTTTTTCCTAGAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCACTTTAAAGTTAAGTTCTCATTTTATTTTTTTTTCCTAGAAACT  300

seq1  AAAATTAGATGTTTGGATTTCTTTTTAATAAACACAAACATTCAGGAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGATGTTTGGATTTCTTTTTAATAAACACAAACATTCAGGAGTG  350

seq1  AGGCTTGTGCCTGAGCAACAGCTTCTGTTCTATAATTGGCATTTCCCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGTGCCTGAGCAACAGCTTCTGTTCTATAATTGGCATTTCCCCCC  400

seq1  TTTCTGATGACTCAGACAGCTGAATTTAGAAACCTTTTACTAACCATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATGACTCAGACAGCTGAATTTAGAAACCTTTTACTAACCATATT  450

seq1  GCTAATCCTAATATTATACTTTTAACGTTTTTATTTTTTTAACACACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATCCTAATATTATACTTTTAACGTTTTTATTTTTTTAACACACATT  500

seq1  TTAAACAGTGAAAGAAAAAAGCCCTGGCTATTGCAAGGGACCCAGAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAGTGAAAGAAAAAAGCCCTGGCTATTGCAAGGGACCCAGAAGAG  550

seq1  CAGGAGTCACGTTGATTCTTGACCTGTGAGAAGATGAAAAGGACAAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTCACGTTGATTCTTGACCTGTGAGAAGATGAAAAGGACAAGAGG  600

seq1  TCCCTGGAATGACAGTGGCCTCACCCATGTCTGAAAAGCCCCGAACCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGAATGACAGTGGCCTCACCCATGTCTGAAAAGCCCCGAACCTGC  650

seq1  ATTCTGTTAACCTTGATGGGGTGGAAACATGCAATATATGTTCCGGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTAACCTTGATGGGGTGGAAACATGCAATATATGTTCCGGAAGT  700

seq1  GTTAACGGAGGAAAAGCAAGGGTG-AAGGAGTCAGTACGGACCACACTCT  749
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTTAACGGAGGAAAAGCAAGGGTGAAAGGAGTCAGTACGGACCACACTCT  750

seq1  TCTAACGTGCAAAAGCAGGCTGAGGGTTTTCATTTGAGATACTCAAAACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACGTGCAAAAGCAGGCTGAGGGTTTTCATTTGAGATACTCAAAACT  800

seq1  GGAAAAAGAATGAAAGCTTTGTCAGGTGTAAACCTTAAAATGAAGCATGC  849
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGAAAAAGAATGAAAGCTTTGTCA-GTGTAAACCTTAAAATGAAGCATGC  849

seq1  TTGACGCCAATTCAAATATACTGCCAACTTCACTTA-TTTGCGTTAGCGA  898
      ||||||||||||||||||||||||||  | |||||| |||||||||||||
seq2  TTGACGCCAATTCAAATATACTGCCACTTCCACTTATTTTGCGTTAGCGA  899

seq1  CTGTTA-TTCTTTTTTTTTAAGAAAAAAAAAAAAGAAGC-TATTTAAATG  946
      |||||| ||||||||||||||||||||||||| | |||| ||||||||| 
seq2  CTGTTATTTCTTTTTTTTTAAGAAAAAAAAAAGA-AAGCTTATTTAAAT-  947

seq1  TTTCCTTTAATTCATCTGCTTGTCCTTAAAAAACGAGACCTAGAGGATTG  996
      | | |||||  |||||||||||||| |||||||||||||||||| |||||
seq2  TGTTCTTTA--TCATCTGCTTGTCC-TAAAAAACGAGACCTAGA-GATTG  993

seq1  ATGAGTGACTGGCAG--CTCAGCAGCAAACTGGAGAGAGAGCCGAGGCTT  1044
      |||| ||||||||||  ||||||||||||||||  |||||| | ||   |
seq2  ATGA-TGACTGGCAGCTCTCAGCAGCAAACTGGGAAGAGAG-CTAG--CT  1039

seq1  AGGCTTGTGCCTCATTATG  1063
      | |||||||||||||||||
seq2  AAGCTTGTGCCTCATTATG  1058

seq1: chr3_117985942_117987035
seq2: B6Ng01-193F02.g_62_1154 (reverse)

seq1  ACTTG-CAGTCCTACCT-ACCCAACCAAAGGAACCTGTTTCATGG-AAGA  47
      ||||| ||||||||||| ||||||||||| ||||||||||||||| ||||
seq2  ACTTGCCAGTCCTACCTAACCCAACCAAA-GAACCTGTTTCATGGAAAGA  49

seq1  TGCAGGTAGGTCAAAGAGACACAGAAGAGAAGTATACCCCAAGTCTTTCT  97
      |||| ||| ||| ||||||||| |||| ||||   ||||||  |||||||
seq2  TGCAAGTA-GTC-AAGAGACAC-GAAGGGAAGGTAACCCCAGTTCTTTCT  96

seq1  CCTTAGGCAGCATTACTGTTTTATACCCCAATCTTGCTACATCCTGATGA  147
      | | |||||||| |||| |||||||| | | |||||||||||||||||||
seq2  CATAAGGCAGCA-TACT-TTTTATACGCAATTCTTGCTACATCCTGATGA  144

seq1  CCTAGTTTAAAAATCAGGAATGGGGAGGAAAGTGGAAGTGTCAGCA-CAT  196
       ||||||| ||||||| |||||||||||||||||||||| |||||| |||
seq2  -CTAGTTT-AAAATCAAGAATGGGGAGGAAAGTGGAAGTTTCAGCACCAT  192

seq1  GACAGAGTTGCCCAG-AGT-AAACAAAGTCAAACAGAAC-AGAAACATTC  243
      ||||||||||||||| ||| ||||||||||||||||||| ||||||||||
seq2  GACAGAGTTGCCCAGAAGTAAAACAAAGTCAAACAGAACAAGAAACATTC  242

seq1  TGTGGTAATGTGAGTACTAATCCTACAGAAGGCCTCTATCTTTATATACA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTAATGTGAGTACTAATCCTACAGAAGGCCTCTATCTTTATATACA  292

seq1  GAACAAAGATACCAACAGGTACATACCTTGTGACCAAGATGCCCTACAAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAGATACCAACAGGTACATACCTTGTGACCAAGATGCCCTACAAT  342

seq1  TATAACATTATAGAAAGATTTATGGAGTTAAAAGAATACCTACTGCTTTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACATTATAGAAAGATTTATGGAGTTAAAAGAATACCTACTGCTTTT  392

seq1  CTTTTGAGCCTAACCATTCTAATTCTTCACTAATGATATTTCTTTCTTTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAGCCTAACCATTCTAATTCTTCACTAATGATATTTCTTTCTTTG  442

seq1  AATAAAATTTAATCTTCATGAGACTCTTTCAGGGGAAAATATGGATTCAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATTTAATCTTCATGAGACTCTTTCAGGGGAAAATATGGATTCAC  492

seq1  AATGTGAAAGGCCACACTTAGCTTGTATAGTAAGTGTAGCATTCATAATG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAAAGGCCACACTTAGCTTGTATAGTAAGTGTAGCATTCATAATG  542

seq1  GAAGTTCCCTGTACAACTTGGTCTCTGTCAACAGTGCACAGAAAACAACA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCCCTGTACAACTTGGTCTCTGTCAACAGTGCACAGAAAACAACA  592

seq1  TAGTGTTAATTAAGTTTAAAAATGTTCTTTCCATTTTAAGACTAATTAGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTAATTAAGTTTAAAAATGTTCTTTCCATTTTAAGACTAATTAGC  642

seq1  ATATAGCACTTTCATCAGCTTTATTGAAAATTTATACCAGGGAATTAGTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCACTTTCATCAGCTTTATTGAAAATTTATACCAGGGAATTAGTT  692

seq1  TCACTGAACATTGCTTCATGGCATAGAAAACCCCTCCCTCAGTAACTCTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAACATTGCTTCATGGCATAGAAAACCCCTCCCTCAGTAACTCTC  742

seq1  CAAATACAGTACATGGATTTAATTAGTTGCTATCTAGTAGAACAAATTTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACAGTACATGGATTTAATTAGTTGCTATCTAGTAGAACAAATTTG  792

seq1  GAATGCTTTAATTGCTATCATTTATCTCTATATCCTATGTTACTTATATC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTTTAATTGCTATCATTTATCTCTATATCCTATGTTACTTATATC  842

seq1  TAGTATTTAGTTCTACTCCATTTGAAAATACACCACAACTTAGTCATGTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTAGTTCTACTCCATTTGAAAATACACCACAACTTAGTCATGTT  892

seq1  GTCAAGAGGGTTGACCATAAGGCTTGCCTGCTCTGTTAAGACTTGATGGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGAGGGTTGACCATAAGGCTTGCCTGCTCTGTTAAGACTTGATGGA  942

seq1  AATGAATCTGGGGAGAAGATGTAACAGTTGCAATAAGAAGCTATGACAGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATCTGGGGAGAAGATGTAACAGTTGCAATAAGAAGCTATGACAGA  992

seq1  ATTCCAGATCAAGATAACAACAGAATGGGTGAGGCTATAAACAAGTGAAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGATCAAGATAACAACAGAATGGGTGAGGCTATAAACAAGTGAAG  1042

seq1  GTCATCAAATGTGTTTGGACCAGAAAGATGTTTAAGAAGCAGAATGAATT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAAATGTGTTTGGACCAGAAAGATGTTTAAGAAGCAGAATGAATT  1092

seq1  C  1094
      |
seq2  C  1093