BAC Information

Click to search

BAC

Clone NameB6Ng01-193I05
Chromosome3 (Build37)
Map Location 21,269,916 - 21,428,772
singlet/doubletdoublet
Overlap geneLOC100040325
Upstream geneEG665094
Downstream gene7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506, LOC675593
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193I05.bB6Ng01-193I05.g
ACCGA016464GA016465
length1,086895
definitionB6Ng01-193I05.b B6Ng01-193I05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,427,673 - 21,428,772)(21,269,916 - 21,270,801)
sequence
gaattcacctgaggatatgaaaagtctgttagctggcttgcattttgcag
gagaggaaatttacctaagatgttcaatgcattgttttaactaagaaata
ccaaagtgtcttaaagagtaagcaattcagggaatcagtgctcagtcatt
tgttgtagactgataggtaagtcaccattgtttttaaaaagctggtatct
acctatcatacctgagggcacagggcagaatgaatggctcagttttaaaa
tagtagtggctagtttccgaattgtttttctagacatttcaaggacttgg
atgaaatatttcaattagtcaaagaagcatggcatgtcagagagcataag
aactagaaagaacatgtatactttcataggcaaaaaggagatacacaaag
gatacttttagtgttggagagatgattctgggggaaaaagtagtttcgga
tcaagtatgagaatctaaatttgactgcccagaacccatataaaagtcaa
atgtcactcaagtatcaattatctcataattcctatgagtatgggaagtg
gagacaagaaaattccaggaaggtagagggtaagctagtctggcatgtgt
agaggaacaataaggagaccctgtttcaaggaaggtagaaggtaggaact
gacaccagaagttgacagctgccatgacatacttgtgtttacattagcat
gcagtaggttgtcctgatgctgcttgtagtattctaatggtaatttgggc
tcccaaaactgattgcacctgagaagagaaagtctgaacatagattctgt
ctacagttaattgtatttgttaaataaagatgctaataatagccagtagc
tgggcagaaggggcagaggtaggtaggtttaccaggcttaagcttggagt
cagagaagaggagaagaaagagaacatgaggagaggagagtagagcccac
catggtaaggtgagagacgtgacttgaggctgcttattgtagcttaggca
ccctgctatttataaggtcagctgctgtcaaatgaagcactataaagata
ctggtgggtactcaacatgagcatgacctcttgatc
gaattccatgatcaaatttccactgttcttttatacatagctccattagt
accaggagatactaatactgtcataaaaagctgcgtaaatgtcagtttaa
ctttcagaataagaccttaagagtctaggttccacactagaggtgtagaa
gaatcattcccaatgcttcaagagaaaatggggtttggaggtaaaggaga
caagaaccctacttctgaaggttgaaagcagaatgtatcttctgaaaatg
catagattagccagctagtctttaaaccactgcagtccttagcctgggag
aaggacagggggagaaaggagaaaggaatcacaggcctgtcacattaaat
actcccacacttggtttcaatttctgtccgacttcccagagcttcagtag
ccctcttttctttttcttctctaatatgctttgtattgatttttttctcc
tggtttctgctgactccacagtctgaacaggctttgaccttaaagccaag
gtcaagtttgtattcctagtaaagaaaaaaaaaaagaaagaaatgaactt
gaaaaaaattatatgatcaagaaaaacaatggagcaagatacatctccta
aaacagtagaaaatgatgtcttctccttaggttttttttccattctattc
ttttgatgatcaaagtgacagatcaatataagctttccagtgagatgagt
gcagttcttccttgggtattgttggtgtctggcattatggggttttcttt
tcttttcttcccttttctttcttttttttttttttcttttttttcgagac
agggtttctctgtgtagctctggctcttccttggaaacttactttgtaga
tcaggttggccttgactcagaaatccatgccttcttgcctctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_21427673_21428772
seq2: B6Ng01-193I05.b_46_1131 (reverse)

seq1  GATCAAGAAGTCATGCTACATGTTGAGTACACA-CAGTATCTTTATAGTG  49
      |||||||| |||||||| |||||||||||| || ||||||||||||||||
seq2  GATCAAGAGGTCATGCT-CATGTTGAGTACCCACCAGTATCTTTATAGTG  49

seq1  CTTCATTTGACAGCCAGCTTGACCTATAAAATAGCAGGGGTGCCCTTAGC  99
      ||||||||||||| |||| ||||||   |||||||| ||||| ||| |||
seq2  CTTCATTTGACAG-CAGC-TGACCTTATAAATAGCA-GGGTG-CCTAAGC  95

seq1  TCCAATTAGGCAGCCCTCAGGTCCACGTTCTCTTCACCCTTAACCCATGG  149
      | ||| || |||| ||||| || |||| |||| ||| |||||  ||||||
seq2  TACAA-TAAGCAG-CCTCAAGT-CACG-TCTC-TCA-CCTTA--CCATGG  137

seq1  T-GGCTCTACCTTCTCCTCTCCTCATGTTCTCTTTCTTCCTCCTCTTCTC  198
      | ||||||||  |||||||||||||||||||||||||| |||||||||||
seq2  TGGGCTCTAC--TCTCCTCTCCTCATGTTCTCTTTCTT-CTCCTCTTCTC  184

seq1  TGACTCCAAGCCTAAGCCTGGTAAACCTACCTACCTCTGCCCCTTCTGCC  248
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCAAGCTTAAGCCTGGTAAACCTACCTACCTCTGCCCCTTCTGCC  234

seq1  CAGCTACTGGCTATTATTAGCATCTTTATTTAACAAATACAATTAACTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACTGGCTATTATTAGCATCTTTATTTAACAAATACAATTAACTGT  284

seq1  AGACAGAATCTATGTTCAGACTTTCTCTTCTCAGGTGCAATCAGTTTTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAATCTATGTTCAGACTTTCTCTTCTCAGGTGCAATCAGTTTTGG  334

seq1  GAGCCCAAATTACCATTAGAATACTACAAGCAGCATCAGGACAACCTACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAAATTACCATTAGAATACTACAAGCAGCATCAGGACAACCTACT  384

seq1  GCATGCTAATGTAAACACAAGTATGTCATGGCAGCTGTCAACTTCTGGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTAATGTAAACACAAGTATGTCATGGCAGCTGTCAACTTCTGGTG  434

seq1  TCAGTTCCTACCTTCTACCTTCCTTGAAACAGGGTCTCCTTATTGTTCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCCTACCTTCTACCTTCCTTGAAACAGGGTCTCCTTATTGTTCCT  484

seq1  CTACACATGCCAGACTAGCTTACCCTCTACCTTCCTGGAATTTTCTTGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACATGCCAGACTAGCTTACCCTCTACCTTCCTGGAATTTTCTTGTC  534

seq1  TCCACTTCCCATACTCATAGGAATTATGAGATAATTGATACTTGAGTGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCCCATACTCATAGGAATTATGAGATAATTGATACTTGAGTGAC  584

seq1  ATTTGACTTTTATATGGGTTCTGGGCAGTCAAATTTAGATTCTCATACTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACTTTTATATGGGTTCTGGGCAGTCAAATTTAGATTCTCATACTT  634

seq1  GATCCGAAACTACTTTTTCCCCCAGAATCATCTCTCCAACACTAAAAGTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCGAAACTACTTTTTCCCCCAGAATCATCTCTCCAACACTAAAAGTA  684

seq1  TCCTTTGTGTATCTCCTTTTTGCCTATGAAAGTATACATGTTCTTTCTAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTGTATCTCCTTTTTGCCTATGAAAGTATACATGTTCTTTCTAG  734

seq1  TTCTTATGCTCTCTGACATGCCATGCTTCTTTGACTAATTGAAATATTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATGCTCTCTGACATGCCATGCTTCTTTGACTAATTGAAATATTTC  784

seq1  ATCCAAGTCCTTGAAATGTCTAGAAAAACAATTCGGAAACTAGCCACTAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGTCCTTGAAATGTCTAGAAAAACAATTCGGAAACTAGCCACTAC  834

seq1  TATTTTAAAACTGAGCCATTCATTCTGCCCTGTGCCCTCAGGTATGATAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAAACTGAGCCATTCATTCTGCCCTGTGCCCTCAGGTATGATAG  884

seq1  GTAGATACCAGCTTTTTAAAAACAATGGTGACTTACCTATCAGTCTACAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATACCAGCTTTTTAAAAACAATGGTGACTTACCTATCAGTCTACAA  934

seq1  CAAATGACTGAGCACTGATTCCCTGAATTGCTTACTCTTTAAGACACTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGACTGAGCACTGATTCCCTGAATTGCTTACTCTTTAAGACACTTT  984

seq1  GGTATTTCTTAGTTAAAACAATGCATTGAACATCTTAGGTAAATTTCCTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTCTTAGTTAAAACAATGCATTGAACATCTTAGGTAAATTTCCTC  1034

seq1  TCCTGCAAAATGCAAGCCAGCTAACAGACTTTTCATATCCTCAGGTGAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAAAATGCAAGCCAGCTAACAGACTTTTCATATCCTCAGGTGAAT  1084

seq1  TC  1100
      ||
seq2  TC  1086

seq1: chr3_21269916_21270801
seq2: B6Ng01-193I05.g_66_959

seq1  GAATTCCATGATCAAATTTCCACTGTTCTTTTATACATAGCTCCATTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGATCAAATTTCCACTGTTCTTTTATACATAGCTCCATTAGT  50

seq1  ACCAGGAGATACTAATACTGTCATAAAAAGCTGCGTAAATGTCAGTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAGATACTAATACTGTCATAAAAAGCTGCGTAAATGTCAGTTTAA  100

seq1  CTTTCAGAATAAGACCTTAAGAGTCTAGGTTCCACACTAGAGGTGTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGAATAAGACCTTAAGAGTCTAGGTTCCACACTAGAGGTGTAGAA  150

seq1  GAATCATTCCCAATGCTTCAAGAGAAAATGGGGTTTGGAGGTAAAGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATTCCCAATGCTTCAAGAGAAAATGGGGTTTGGAGGTAAAGGAGA  200

seq1  CAAGAACCCTACTTCTGAAGGTTGAAAGCAGAATGTATCTTCTGAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACCCTACTTCTGAAGGTTGAAAGCAGAATGTATCTTCTGAAAATG  250

seq1  CATAGATTAGCCAGCTAGTCTTTAAACCACTGCAGTCCTTAGCCTGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATTAGCCAGCTAGTCTTTAAACCACTGCAGTCCTTAGCCTGGGAG  300

seq1  AAGGACAGGGGGAGAAAGGAGAAAGGAATCACAGGCCTGTCACATTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGGGGGAGAAAGGAGAAAGGAATCACAGGCCTGTCACATTAAAT  350

seq1  ACTCCCACACTTGGTTTCAATTTCTGTCCGACTTCCCAGAGCTTCAGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCACACTTGGTTTCAATTTCTGTCCGACTTCCCAGAGCTTCAGTAG  400

seq1  CCCTCTTTTCTTTTTCTTCTCTAATATGCTTTGTATTGATTTTTTTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTTCTTTTTCTTCTCTAATATGCTTTGTATTGATTTTTTTCTCC  450

seq1  TGGTTTCTGCTGACTCCACAGTCTGAACAGGCTTTGACCTTAAAGCCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTGCTGACTCCACAGTCTGAACAGGCTTTGACCTTAAAGCCAAG  500

seq1  GTCAAGTTTGTATTCCTAGTAAAGAAAAAAAAAAAGAAAGAAATGAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTTTGTATTCCTAGTAAAGAAAAAAAAAAAGAAAGAAATGAACTT  550

seq1  GAAAAAAATTATATGATCAAGAAAAACAATGGAGCAAGATACATCTCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATTATATGATCAAGAAAAACAATGGAGCAAGATACATCTCCTA  600

seq1  AAACAGTAGAAAATGATGTCTTCTCCTTAGGTTTTTTTTCCATTCTAT--  648
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  AAACAGTAGAAAATGATGTCTTCTCCTTAGGTTTTTTTTCCATTCTATTC  650

seq1  CTTTGATGATCAAAGTGACAGATCAATATAAGC-TTCCAGTGAGATGAGT  697
       |||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTTGATGATCAAAGTGACAGATCAATATAAGCTTTCCAGTGAGATGAGT  700

seq1  GCAGTTCTTCCTTGGGTATTGTTGGTGTCTGGCATTAT-GGGTTTTCTTT  746
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCAGTTCTTCCTTGGGTATTGTTGGTGTCTGGCATTATGGGGTTTTCTTT  750

seq1  TCTTTTCTTTCCTTTTCTTTCTTTTTTTTTTTTTTCTTTTTTTTCGAGAC  796
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTCCCTTTTCTTTCTTTTTTTTTTTTTTCTTTTTTTTCGAGAC  800

seq1  AGGGTTTCTCTGTGTAGCTCTGGCTC-TCCT--GGAACTCACTTTGTAGA  843
      |||||||||||||||||||||||||| ||||  | |||| ||||||||||
seq2  AGGGTTTCTCTGTGTAGCTCTGGCTCTTCCTTGGAAACTTACTTTGTAGA  850

seq1  TCAGGCTGGCCTTGAACTCAGAAATCCATGCCT--CTGCCTCTGC  886
      ||||| |||||||| ||||||||||||||||||   |||||||||
seq2  TCAGGTTGGCCTTG-ACTCAGAAATCCATGCCTTCTTGCCTCTGC  894