BAC Information

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BAC

Clone NameB6Ng01-193J01
Chromosome3 (Build37)
Map Location 135,255,703 - 135,256,615
singlet/doubletsinglet
Overlap geneNfkb1
Upstream geneLOC100039234, Tacr3, LOC229837, LOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745
Downstream geneENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193J01.bB6Ng01-193J01.g
ACCGA016502GA016503
length1,177927
definitionB6Ng01-193J01.b B6Ng01-193J01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaatattaaatggccgagaagcacctaaagaaatg
ttcaacatccttagtcatcagggaaatacaaatcaaaacaaccctgagat
tccacctcataccagtcagaatggctaaaatcaaaaactcaagtgatagc
agatgctagtgaggatgtgaagaaagaggaacactcctccacggctggtg
ggattgcaagctggtacaactctggaaatcagtctggcggttcctcataa
aattggacatagtactacctgaggacccagctatacaactcctgggcata
tatccagaagatgttccaaccggtaagaaggacacatgctccactatgtt
catagcagccttatttataatagccaggagctggaaagaacccagatacc
tctcaaacgaagaatagatacagaaaatgtggtacatttacacaatggga
tactactcagctattaaaaatgatgaattcatgaaattcttaggcaaatg
gatagaactagaaaatatcatcctgagtgaggtaacccaattgcaaaaga
acacacatggtatgcactcactgataagtggatattagcccaaaagctcc
aaataaccaagatacaattcacagaccacatgaagctcaataaaaaggaa
gaccaaagggtggatgtttcggtccttcttagaaggagaacaaaatactc
acaggagcaaatatggagacaaagtatagagcagagactaaaggaaaggc
catccatagactgtcccacatggggattcatcccgtataccagacactat
tgtagatgccaagaagtgcttgctgacaggagcctgatatagctgtctcc
tgaagaggccctgccagagcctgacaaatacagaggtggattacttcgcc
agccaccactgaactgagcacagggtccccaatagaggagttaaagaagg
gacctgaaggagttgaaagggtttgcaacccataggaaaacaacaatatc
atcaaccagactcctccctcctcacagagagcctcctaggagtctagcat
ccacaaggaatacatgactccgctgccattgttgcaaagatgcttgtcat
gctcatgcagaagtcttggtccatgtaggtcttaagttccagtagtacta
gtcagatgtcgatcgtgcgacctatca
gaattcaagtaaaagtgtttacatttatatatttactgtcgagacagtat
ctcactatgtatctttgttctgcctagaactatgtggaccaaggtagcct
aagcttgtggccattctcctgcctcagccttctgaatgttgagatttcag
gtgtctgactaagagacaaccttttttttttcccccagtataatcagtga
cttccaaaatgactcaacacattacaaccaaggcctctttgcctgaatct
ataaggaatgtgtcgttcacaaatcctcccttatcaacctctgaagtaaa
tcaggtgtgtctgggcaggcccggaaggccagccaacctcatcaagcatg
tgttaacactgaacacacaaagcgccggagacaggagatgagctggaatg
tttctgagtgctttacaggaaggactagaaccccaggcagagcagaaaga
aagacagcgtgaagaataagagtctgcagtcaggctgcggtgctgtgact
cagctttccgggacactgggagtggggcttgatcatctttgtagtctgcc
ttcttggtgctcagatgggattaatagcaacagttcttatctcagagagt
tactgaggagtagatgtgataaaggagactgtgaatatgggatgccagca
tggtgcctggagccgaggaaaggcagtggaggccagcaagtctttagtgc
ctcgtgcacagtaacacaaatacagggctcatttgcttttcccatgcttt
cagcttctaagagactttttttttttttgcaaaaggaagtcttttagata
tttttcctttctgggagactttgtaatatgaccaagaagctgaacacagc
ttcaagattttataaggtaccgagtccacctcaacaacctcaaaggcaac
gtagatataaccagagagtggggaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_135255703_135256615
seq2: B6Ng01-193J01.g_66_992

seq1  GAATTCAAGTAAAAGTGTTTACATTTATATATTTACTGTCGAGACAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTAAAAGTGTTTACATTTATATATTTACTGTCGAGACAGTAT  50

seq1  CTCACTATGTATCTTTGTTCTGCCTAGAACTATGTGGACCAAGGTAGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTATGTATCTTTGTTCTGCCTAGAACTATGTGGACCAAGGTAGCCT  100

seq1  AAGCTTGTGGCCATTCTCCTGCCTCAGCCTTCTGAATGTTGAGATTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGTGGCCATTCTCCTGCCTCAGCCTTCTGAATGTTGAGATTTCAG  150

seq1  GTGTCTGACTAAGAGACAACCTTTTTTTTTTCCCCCAGTATAATCAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGACTAAGAGACAACCTTTTTTTTTTCCCCCAGTATAATCAGTGA  200

seq1  CTTCCAAAATGACTCAACACATTACAACCAAGGCCTCTTTGCCTGAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAAATGACTCAACACATTACAACCAAGGCCTCTTTGCCTGAATCT  250

seq1  ATAAGGAATGTGTCGTTCACAAATCCTCCCTTATCAACCTCTGAAGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAATGTGTCGTTCACAAATCCTCCCTTATCAACCTCTGAAGTAAA  300

seq1  TCAGGTGTGTCTGGGCAGGCCCGGAAGGCCAGCCAACCTCATCAAGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGTGTCTGGGCAGGCCCGGAAGGCCAGCCAACCTCATCAAGCATG  350

seq1  TGTTAACACTGAACACACAAAGCGCCGGAGACAGGAGATGAGCTGGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACACTGAACACACAAAGCGCCGGAGACAGGAGATGAGCTGGAATG  400

seq1  TTTCTGAGTGCTTTACAGGAAGGACTAGAACCCCAGGCAGAGCAGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTGCTTTACAGGAAGGACTAGAACCCCAGGCAGAGCAGAAAGA  450

seq1  AAGACAGCGTGAAGAATAAGAGTCTGCAGTCAGGCTGCGGTGCTGTGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCGTGAAGAATAAGAGTCTGCAGTCAGGCTGCGGTGCTGTGACT  500

seq1  CAGCTTTCCGGGACACTGGGAGTGGGGCTTGATCATCTTTGTAGTCTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTCCGGGACACTGGGAGTGGGGCTTGATCATCTTTGTAGTCTGCC  550

seq1  TTCTTGGTGCTCAGATGGGATTAATAGCAACAGTTCTTATCTCAGAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTGCTCAGATGGGATTAATAGCAACAGTTCTTATCTCAGAGAGT  600

seq1  TACTGAGGAGTAGATGTGATAAAGGAGACTGTGAATATGGGATGCCAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGGAGTAGATGTGATAAAGGAGACTGTGAATATGGGATGCCAGCA  650

seq1  TGGTGCCTGGAGCCGAGGAAAGGCAGTGGAGGCCAGCAAGTC-TTAGTGC  699
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGTGCCTGGAGCCGAGGAAAGGCAGTGGAGGCCAGCAAGTCTTTAGTGC  700

seq1  CTCGTGCACAGTAACACAAATACAGGGCTCATTTGCTTTTCCCATGCTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGCACAGTAACACAAATACAGGGCTCATTTGCTTTTCCCATGCTTT  750

seq1  CAGCTTCTAAGAGAC-TTTTTTTTTTTTGCAAAAGGAAGTC-TTTAGATA  797
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  CAGCTTCTAAGAGACTTTTTTTTTTTTTGCAAAAGGAAGTCTTTTAGATA  800

seq1  TTTT--CCTTCTGGGAGAC-TTGTAATATGACC-AGAAGCTG-ACACAGC  842
      ||||  | ||||||||||| ||||||||||||| |||||||| |||||||
seq2  TTTTTCCTTTCTGGGAGACTTTGTAATATGACCAAGAAGCTGAACACAGC  850

seq1  -TCAAGATTTTAT-AGGTACCGAGTCAACCTCAACAACC-CAAAGGCAAC  889
       |||||||||||| |||||||||||| |||||||||||| ||||||||||
seq2  TTCAAGATTTTATAAGGTACCGAGTCCACCTCAACAACCTCAAAGGCAAC  900

seq1  GTAG--ATAACCAGAGAGT-GGGAACT  913
      ||||  ||||||||||||| |||||||
seq2  GTAGATATAACCAGAGAGTGGGGAACT  927