BAC Information

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BAC

Clone NameB6Ng01-193N19
Chromosome3 (Build37)
Map Location 116,872,929 - 117,020,679
singlet/doubletdoublet
Overlap geneLOC674908
Upstream geneGpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik
Downstream geneD3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193N19.bB6Ng01-193N19.g
ACCGA016710GA016711
length1,101888
definitionB6Ng01-193N19.b B6Ng01-193N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,872,929 - 116,874,022)(117,019,799 - 117,020,679)
sequence
gaattcaggacttttccttctgtggctaaacggctgagttactttggaaa
catttggatttttttttttttttttgcctgtttgtactgcaaagcattac
ttctaaaatacagatggttccttttatatcggaggtgacctttgtgagcc
aaccagacctcatttcccaagcttctctaagagtcaaatcctgaagaaat
ataaactctgataattatcgattatctaacaaaagggagacaaaggcaaa
ttaaaacttaatttaaatggctgattgcttaatgagatctcaggtgttct
tgctagccctagttaccatggggattatttaatgctgagaagaagttcag
aataccaaaggagattgcgagcttttggagcacctacagagagaagcaaa
gcaagaatcacttgtatcttgaatagggcaatcctggttacatgcacatc
tgcacttaatacttcccagaaaggcttctggaaagatgtctgaggtccaa
atacagaatgattgttttcgtaattttctagtgttggagactgaacttgg
gggtcttggacgcatcctttatagatataattctaacatgagccaatgtg
ccagtgatggagaatttccattgctaccttgactggatttagaatcgact
agtggatacgtctctgggtatgtctgtgatggtgttttcagagaggttaa
ctgaggagacaagacacaccttgaacatgagcatcatcatcctgcagagg
gaggataaaagagaaagtgatctgagcaccagcattcatttctctctgtt
tcctcactgcagatgcaatgtgaccaaccattgacacatttccttgctgc
catgccttccccagcatgatgggactgtattccctcaaactgtgagccac
atcattaggatgagtcccttcaagtatttttgtcccaacaattaagtaac
taagaacagtggcctaaaaaaaaaaaaaatcaacctttttcttgatatta
aataccaaaacattccttacattgatacttatcttcatattgaattcttg
gatttcaaaggcttaatctttattcatgtaggaaactggggtggagaagc
t
gaattcttcagtaaccactctttccagttgcaagaaaatatctaagtgag
aggttaataaagagatgagccactacagtactcagaaaatgtagtcagag
gttcctaactgtgatgatccattcctcgtggacagttaatgtccgagact
agagaactggggttaaccgtagctctggcattaattccatgtaacgagca
tggtgtgcccatttcttctcctttcaacgcctattgttttcagatcttct
gtcattgctgtgaggaaatctatcaaaagtctaaaattctccttatagaa
cagtaccacagacatttaaatgaatgagtcagaaaaaaattgtgaatgta
ttagattcatacaaaattaaccctttcccttgattacttcagggtgccct
gtagggaaataaaggctactcccttgttatgaactgagatgttccctaag
ataggaagcctggcttctccccatgcatagtaatccaccttttagccttt
ggtgtctggatacatgccattttggaatttagggaaaacataatttactc
ctccttcggggtcaattttccccactgtggaactaagttaataatgacag
actttgcaaaaattctataagaagagcttgaacacctaagtataaacata
tataacttttatattaaaaacaggagaaaatactttaaatctaagggttt
tatggaggttggtctggaaatgtatttttccaagtttttagtttatcttt
tcatctttttcatatgccctttctttttacagtacccccaggaatgtata
atttgatatgtaattgtcaaataaaaactgtatgggatatacttcagggg
tgtcctgatattattaaccacatattttgttgtgaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_116872929_116874022
seq2: B6Ng01-193N19.b_48_1148

seq1  GAATTCAGGACTTTTCCTTCTGTGGCTAAACGGCTGAGTTACTTTGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACTTTTCCTTCTGTGGCTAAACGGCTGAGTTACTTTGGAAA  50

seq1  CATTTGGATTTTTTTTTTTTTTTTTGCCTGTTTGTACTGCAAAGCATTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGATTTTTTTTTTTTTTTTTGCCTGTTTGTACTGCAAAGCATTAC  100

seq1  TTCTAAAATACAGATGGTTCCTTTTATATCGGAGGTGACCTTTGTGAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAATACAGATGGTTCCTTTTATATCGGAGGTGACCTTTGTGAGCC  150

seq1  AACCAGACCTCATTTCCCAAGCTTCTCTAAGAGTCAAATCCTGAAGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGACCTCATTTCCCAAGCTTCTCTAAGAGTCAAATCCTGAAGAAAT  200

seq1  ATAAACTCTGATAATTATCGATTATCTAACAAAAGGGAGACAAAGGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTCTGATAATTATCGATTATCTAACAAAAGGGAGACAAAGGCAAA  250

seq1  TTAAAACTTAATTTAAATGGCTGATTGCTTAATGAGATCTCAGGTGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTTAATTTAAATGGCTGATTGCTTAATGAGATCTCAGGTGTTCT  300

seq1  TGCTAGCCCTAGTTACCATGGGGATTATTTAATGCTGAGAAGAAGTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCCCTAGTTACCATGGGGATTATTTAATGCTGAGAAGAAGTTCAG  350

seq1  AATACCAAAGGAGATTGCGAGCTTTTGGAGCACCTACAGAGAGAAGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAAAGGAGATTGCGAGCTTTTGGAGCACCTACAGAGAGAAGCAAA  400

seq1  GCAAGAATCACTTGTATCTTGAATAGGGCAATCCTGGTTACATGCACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAATCACTTGTATCTTGAATAGGGCAATCCTGGTTACATGCACATC  450

seq1  TGCACTTAATACTTCCCAGAAAGGCTTCTGGAAAGATGTCTGAGGTCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTAATACTTCCCAGAAAGGCTTCTGGAAAGATGTCTGAGGTCCAA  500

seq1  ATACAGAATGATTGTTTTCGTAATTTTCTAGTGTTGGAGACTGAACTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAATGATTGTTTTCGTAATTTTCTAGTGTTGGAGACTGAACTTGG  550

seq1  GGGTCTTGGACGCATCCTTTATAGATATAATTCTAACATGAGCCAATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTGGACGCATCCTTTATAGATATAATTCTAACATGAGCCAATGTG  600

seq1  CCAGTGATGGAGAATTTCCATTGCTACCTTGACTGGATTTAGAATCGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGATGGAGAATTTCCATTGCTACCTTGACTGGATTTAGAATCGACT  650

seq1  AGTGGATACGTCTCTGGGTATGTCTGTGATGGTGTTTTCAGAGAGGTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATACGTCTCTGGGTATGTCTGTGATGGTGTTTTCAGAGAGGTTAA  700

seq1  CTGAGGAGACAAGACACACCTTGAACATGAGCATCATCATCCTGCAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAGACAAGACACACCTTGAACATGAGCATCATCATCCTGCAGAGG  750

seq1  GAGGATAAAAGAGAAAGTGATCTGAGCACCAGCATTCATTTCTCTCTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATAAAAGAGAAAGTGATCTGAGCACCAGCATTCATTTCTCTCTGTT  800

seq1  TCCTCACTGCAGATGCAATGTGACCAACCA-TGACACATT--CCTGCTGC  847
      |||||||||||||||||||||||||||||| |||||||||  | ||||||
seq2  TCCTCACTGCAGATGCAATGTGACCAACCATTGACACATTTCCTTGCTGC  850

seq1  CATGCCTTCCCCAGCATGAT-GGACTGTA-TCCCTCAAACTGTGAGCCAA  895
      |||||||||||||||||||| |||||||| |||||||||||||||||| |
seq2  CATGCCTTCCCCAGCATGATGGGACTGTATTCCCTCAAACTGTGAGCC-A  899

seq1  CATCATTAGGATGAGT-CCTTCAGGTATTTTTGTCACAACAA-TAAGTAA  943
      |||||||||||||||| |||||| ||||||||||| |||||| |||||||
seq2  CATCATTAGGATGAGTCCCTTCAAGTATTTTTGTCCCAACAATTAAGTAA  949

seq1  CTAAG-ACAGTGGC--TAAAAAAAAAAAAATC-ACCTTTT--CTGATATT  987
      ||||| ||||||||   ||||||||||||||| |||||||   |||||||
seq2  CTAAGAACAGTGGCCTAAAAAAAAAAAAAATCAACCTTTTTCTTGATATT  999

seq1  AAATACAAAAACA-TCCTAACA-TGATAC-TATC-TCATATGAATTTCTT  1033
      |||||| |||||| |||| ||| |||||| |||| ||||||  | |||||
seq2  AAATACCAAAACATTCCTTACATTGATACTTATCTTCATATTGAATTCTT  1049

seq1  GGATTTCAAAAGGGGTTTAATCTTTAATTTCATGTGAGGGAAACAGGGGG  1083
      ||||||||||   || ||||||||||  |||||||   ||||||  ||||
seq2  GGATTTCAAA---GGCTTAATCTTTA--TTCATGT--AGGAAAC-TGGGG  1091

seq1  TGGAGGAAGCT  1094
      |||| ||||||
seq2  TGGA-GAAGCT  1101

seq1: chr3_117019799_117020679
seq2: B6Ng01-193N19.g_70_957 (reverse)

seq1  ATTTCACAAC-ATATATGT-GTTAAT-ATATCA-GACACCCCTG-AGTAT  45
      |||||||||| | |||||| |||||| |||||| |||||||||| |||||
seq2  ATTTCACAACAAAATATGTGGTTAATAATATCAGGACACCCCTGAAGTAT  50

seq1  ATCCCATACAGTTTTTATTTGACAATTACATATC-AATTATACATTCCTG  94
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATCCCATACAGTTTTTATTTGACAATTACATATCAAATTATACATTCCTG  100

seq1  GGGGTAACTGTAAAAAGAAAGGGCATATGAAAAAGATGAAAAGATAAACT  144
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGT-ACTGTAAAAAGAAAGGGCATATGAAAAAGATGAAAAGATAAACT  149

seq1  AAAAACTTGG-AAAATACATTTCCAGACCAGCCTCCATAAAACCCTTAGA  193
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  AAAAACTTGGAAAAATACATTTCCAGACCAACCTCCATAAAACCCTTAGA  199

seq1  TTTAAAGTATTTTCTCCTGTTTTTAATATAAAAGTTATATATG-TTATAC  242
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTAAAGTATTTTCTCCTGTTTTTAATATAAAAGTTATATATGTTTATAC  249

seq1  TTAGGTGTTCAAGCTCTTCTTATAGAATTTTTGCAAAGTCTGTCATTATT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGTTCAAGCTCTTCTTATAGAATTTTTGCAAAGTCTGTCATTATT  299

seq1  AACTTAGTTCCACAGTGGGGAAAATTGACCCCGAAGGAGGAGTAAATTAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGTTCCACAGTGGGGAAAATTGACCCCGAAGGAGGAGTAAATTAT  349

seq1  GTTTTCCCTAAATTCCAAAATGGCATGTATCCAGACACCAAAGGCTAAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCCTAAATTCCAAAATGGCATGTATCCAGACACCAAAGGCTAAAA  399

seq1  GGTGGATTACTATGCATGGGGAGAAGCCAGGCTTCCTATCTTAGGGAACA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATTACTATGCATGGGGAGAAGCCAGGCTTCCTATCTTAGGGAACA  449

seq1  TCTCAGTTCATAACAAGGGAGTAGCCTTTATTTCCCTACAGGGCACCCTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTTCATAACAAGGGAGTAGCCTTTATTTCCCTACAGGGCACCCTG  499

seq1  AAGTAATCAAGGGAAAGGGTTAATTTTGTATGAATCTAATACATTCACAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATCAAGGGAAAGGGTTAATTTTGTATGAATCTAATACATTCACAA  549

seq1  TTTTTTTCTGACTCATTCATTTAAATGTCTGTGGTACTGTTCTATAAGGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTGACTCATTCATTTAAATGTCTGTGGTACTGTTCTATAAGGA  599

seq1  GAATTTTAGACTTTTGATAGATTTCCTCACAGCAATGACAGAAGATCTGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTAGACTTTTGATAGATTTCCTCACAGCAATGACAGAAGATCTGA  649

seq1  AAACAATAGGCGTTGAAAGGAGAAGAAATGGGCACACCATGCTCGTTACA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATAGGCGTTGAAAGGAGAAGAAATGGGCACACCATGCTCGTTACA  699

seq1  TGGAATTAATGCCAGAGCTACGGTTAACCCCAGTTCTCTAGTCTCGGACA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTAATGCCAGAGCTACGGTTAACCCCAGTTCTCTAGTCTCGGACA  749

seq1  TTAACTGTCCACGAGGAATGGATCATCACAGTTAGGAACCTCTGACTACA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGTCCACGAGGAATGGATCATCACAGTTAGGAACCTCTGACTACA  799

seq1  TTTTCTGAGTACTGTAGTGGCTCATCTCTTTATTAACCTCTCACTTAGAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGAGTACTGTAGTGGCTCATCTCTTTATTAACCTCTCACTTAGAT  849

seq1  ATTTTCTTGCAACTGGAAAGAGTGGTTACTGAAGAATTC  881
      |||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTGCAACTGGAAAGAGTGGTTACTGAAGAATTC  888