BAC Information

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BAC

Clone NameB6Ng01-193O07
Chromosome3 (Build37)
Map Location 129,873,126 - 130,015,620
singlet/doubletdoublet
Overlap geneCol25a1
Upstream genePitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845
Downstream geneAgxt2l1, 2310008M10Rik, Rpl34, LOC546811, LOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193O07.bB6Ng01-193O07.g
ACCGA016734GA016735
length8681,166
definitionB6Ng01-193O07.b B6Ng01-193O07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,014,761 - 130,015,620)(129,873,126 - 129,874,240)
sequence
gaattcaaaccaatcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtatcagttaagagcaattaaatactacctagtaaaatatttt
ctgtgtacagaaatctttacaaatacagcatacctaataacagctagtct
tttacattttaagtacagtcacaccagaaattctatttcatagtcctttg
ccacttgagaactcttaggatctctccctcacccctgttcccccttccct
ctaccagacacacacacacttccattttttccatagctcaggggagagac
aggattgctgagtaagggggattatgtggtctgactatgtggttggactt
gtgtggtctgactatgagacacttagagatttaatggagagctggcatgg
cagctgttcagctctacccctgaggccatttcatcctcactaagaatgta
aagaaatcactgaaaagaagcggcagacagagctttgaagatagtcatca
gcccacaaatgcaaacaagaagtggtagtcatcagctgaaactctgaagt
atcttccccgaggaattaaaatccatcgctttttcaactgaaacaaaagc
atccagagagtccatctttctaatttaacttacccactcctgagatttta
atcaggaagactcctctctaacatttaggtgctctgtcttctttcaacac
tggacaactgagaagcgcctgggaaacatatcttaagcgagcaaggggga
aatgggcccttactataccctctcttagcctctatcgttcttgccccata
gccttggatcattctgaaccgcaaagaagcctctgaatatcactcaaagc
atttcaaagagaggccaa
gaattcttctgtgctggcttcttgcactaatcatagtattttcaaggttc
ccccatgttgtgtcatatatataaagtgcatcattccctgttattggctt
aaaaatgccccattaaatgagcattctatatcttattcatttgttacttg
atggctgtatgggttgtttctactgtttactataaacattgctattataa
aaatacatgtgcacatatctgtgtagacatgaattttgtattcttttgga
tatacatctggaagtggcaatagcagaatgtagaggaaatttaatctaac
aacatagctactctggctggattacagacacctttagtacatacctttaa
tcccaaacaatgacggtgaagtcagtttgtggggggaagcatccatgttt
gaaggtgatgtctacttgaggggcagacaaaatgatgagttagagaaaga
tttcacagaatgagtcagagataggatagacccaacttttatgagaaaag
acaggaaagagagacaacttaaaagagcagcaaggggagagagaggagtt
ctgtggagttcagttccatgcagtcagtgtagttcggtttgtggattttc
gaagcagtctttccaagcagagcagttcagcgagaagctgagagaagcca
gtttgaatcagtcagcttggaatgggtttgagccagaacagctgagttgg
accagccagccagagttcagaaagaactagaaagggtgagcttattaagt
ggtaagcctctgagacaacaattatatcaagtgactaaaagttactttta
cagctgtgtttgatcagagtgagagtgttagaaaggacgagtctttcggg
cagttaagtcaggaggggaaatccctcttgggtggattttcctcttcttg
caaaagagatccaggagatatcccatgatccttctgccatgtgagatcac
aagtagaggatgaaggtgtgcttccaggctacttagtctgcagtgttttg
ttaatcactcaagcggactcttgacatcggattgcaatagttatatcctt
cttgtctaatgtatgggggtgtgcaaaggattgattggcaggttccataa
cctctaagagcatgaatgcctatctgagaacatatgctactggggtatac
tcgtcagattatatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_130014761_130015620
seq2: B6Ng01-193O07.b_45_909 (reverse)

seq1  GCCTCTCTTTGAAATGCTTTGAGTGATA-TCAGAGCTTCCTTTGCGG-TC  48
      |||||||||||||||||||||||||||| ||||||  | |||||||| ||
seq2  GCCTCTCTTTGAAATGCTTTGAGTGATATTCAGAGGCTTCTTTGCGGTTC  50

seq1  AGAATGATCCAAGGCTATGGGGCAAGAAACGATAGAGGCTAAGAGAGGGT  98
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGAATGATCCAAGGCTATGGGGCAAG-AACGATAGAGGCTAAGAGAGGGT  99

seq1  ATAGTA--GGGCCATTTCCCCCTTGCTCGCTTAAGATATGTTTCCCAGGC  146
      ||||||  || |||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAGGGCCCATTTCCCCCTTGCTCGCTTAAGATATGTTTCCCAGGC  149

seq1  GCTTCTCAGTTGTCCAGTGTTGAAAGAAGACAGAGCACCTAAATGTTAGA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCAGTTGTCCAGTGTTGAAAGAAGACAGAGCACCTAAATGTTAGA  199

seq1  GAGGAGTCTTCCTGATTAAAATCTCAGGAGTGGGTAAGTTAAATTAGAAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTCTTCCTGATTAAAATCTCAGGAGTGGGTAAGTTAAATTAGAAA  249

seq1  GATGGACTCTCTGGATGC-TTTGTTTCAGTTG-AAAAGCGATGGATTTTA  294
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  GATGGACTCTCTGGATGCTTTTGTTTCAGTTGAAAAAGCGATGGATTTTA  299

seq1  ATTCCTCGGGGAAGATACTTCAGAGTTTCAGCTGATGACTTCCACTTCTT  344
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATTCCTCGGGGAAGATACTTCAGAGTTTCAGCTGATGACTACCACTTCTT  349

seq1  GTTTGCATTTGTGGGCTGATGACTATCTTCAAAGCTCTGTCTGCCGCTTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCATTTGTGGGCTGATGACTATCTTCAAAGCTCTGTCTGCCGCTTC  399

seq1  TTTTCAGTGATTTCTTTACATTCTTAGTGAGGATGAAATGGCCTCAGGGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTGATTTCTTTACATTCTTAGTGAGGATGAAATGGCCTCAGGGG  449

seq1  TAGAGCTGAACAGCTGCCATGCCAGCTCTCCATTAAATCTCTAAGTGTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTGAACAGCTGCCATGCCAGCTCTCCATTAAATCTCTAAGTGTCT  499

seq1  CATAGTCAGACCACACAAGTCCAACCACATAGTCAGACCACATAATCCCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCAGACCACACAAGTCCAACCACATAGTCAGACCACATAATCCCC  549

seq1  CTTACTCAGCAATCCTGTCTCTCCCCTGAGCTATGGAAAAAATGGAAGTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCAGCAATCCTGTCTCTCCCCTGAGCTATGGAAAAAATGGAAGTG  599

seq1  TGTGTGTGTCTGGTAGAGGGAAGGGGGAACAGGGGTGAGGGAGAGATCCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTCTGGTAGAGGGAAGGGGGAACAGGGGTGAGGGAGAGATCCT  649

seq1  AAGAGTTCTCAAGTGGCAAAGGACTATGAAATAGAATTTCTGGTGTGACT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTCTCAAGTGGCAAAGGACTATGAAATAGAATTTCTGGTGTGACT  699

seq1  GTACTTAAAATGTAAAAGACTAGCTGTTATTAGGTATGCTGTATTTGTAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTAAAATGTAAAAGACTAGCTGTTATTAGGTATGCTGTATTTGTAA  749

seq1  AGATTTCTGTACACAGAAAATATTTTACTAGGTAGTATTTAATTGCTCTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTGTACACAGAAAATATTTTACTAGGTAGTATTTAATTGCTCTT  799

seq1  AACTGATACACACACACACACACACACACACACACACACACACACACACA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATACACACACACACACACACACACACACACACACACACACACACA  849

seq1  TGATTGGTTTGAATTC  860
      ||||||||||||||||
seq2  TGATTGGTTTGAATTC  865

seq1: chr3_129873126_129874240
seq2: B6Ng01-193O07.g_130_1229

seq1  ATATATAAAGTGCATCATTCCCTGTTATTGGCTTAAAAATGCCCCATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAAGTGCATCATTCCCTGTTATTGGCTTAAAAATGCCCCATTAA  50

seq1  ATGAGCATTCTATATCTTATTCATTTGTTACTTGATGGCTGTATGGGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCATTCTATATCTTATTCATTTGTTACTTGATGGCTGTATGGGTTG  100

seq1  TTTCTACTGTTTACTATAAACATTGCTATTATAAAAATACATGTGCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTGTTTACTATAAACATTGCTATTATAAAAATACATGTGCACAT  150

seq1  ATCTGTGTAGACATGAATTTTGTATTCTTTTGGATATACATCTGGAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTAGACATGAATTTTGTATTCTTTTGGATATACATCTGGAAGTG  200

seq1  GCAATAGCAGAATGTAGAGGAAATTTAATCTAACAACATAGCTACTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGCAGAATGTAGAGGAAATTTAATCTAACAACATAGCTACTCTGG  250

seq1  CTGGATTACAGACACCTTTAGTACATACCTTTAATCCCAAACAATGACGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTACAGACACCTTTAGTACATACCTTTAATCCCAAACAATGACGG  300

seq1  TGAAGTCAGTTTGTGGGGGGAAGCATCCATGTTTGAAGGTGATGTCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCAGTTTGTGGGGGGAAGCATCCATGTTTGAAGGTGATGTCTACT  350

seq1  TGAGGGGCAGACAAAATGATGAGTTAGAGAAAGATTTCACAGAATGAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGCAGACAAAATGATGAGTTAGAGAAAGATTTCACAGAATGAGTC  400

seq1  AGAGATAGGATAGACCCAACTTTTATGAGAAAAGACAGGAAAGAGAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAGGATAGACCCAACTTTTATGAGAAAAGACAGGAAAGAGAGACA  450

seq1  ACTTAAAAGAGCAGCAAGGGGAGAGAGAGGAGTTCTGTGGAGTTCAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAAGAGCAGCAAGGGGAGAGAGAGGAGTTCTGTGGAGTTCAGTTC  500

seq1  CATGCAGTCAGTGTAGTTCGGTTTGTGGATTTTCGAAGCAGTCTTTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGTCAGTGTAGTTCGGTTTGTGGATTTTCGAAGCAGTCTTTCCAA  550

seq1  GCAGAGCAGTTCAGCGAGAAGCTGAGAGAAGCCAGTTTGAATCAGTCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCAGTTCAGCGAGAAGCTGAGAGAAGCCAGTTTGAATCAGTCAGC  600

seq1  TTGGAATGGGTTTGAGCCAGAACAGCTGAGTTGGACCAGCCAGCCAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATGGGTTTGAGCCAGAACAGCTGAGTTGGACCAGCCAGCCAGAGT  650

seq1  TCAGAAAGAACTAGAAAGGGTGAGCTTATTAAGTGGTAAGCCTCTGAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGAACTAGAAAGGGTGAGCTTATTAAGTGGTAAGCCTCTGAGAC  700

seq1  AACAATTATATCAAGTGACTAAAAGTTACTTTTACAGCTGTGTTTGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTATATCAAGTGACTAAAAGTTACTTTTACAGCTGTGTTTGATCA  750

seq1  GAGTGAGAGTGTTAGAAAGGACGAGTCTTTC-GGCAGTTAAGTCAGGAGG  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAGTGAGAGTGTTAGAAAGGACGAGTCTTTCGGGCAGTTAAGTCAGGAGG  800

seq1  GGAAATCCCTCTTGGTTGGATTT--CTCTTCTTGCAAAAGAGATCCCAGA  847
      ||||||||||||||| |||||||  |||||||||||||||||||||  ||
seq2  GGAAATCCCTCTTGGGTGGATTTTCCTCTTCTTGCAAAAGAGATCCAGGA  850

seq1  GATATCCCATGATCCCTTCTGCCATGTGAGATCAC-AGTAGAGGATGAAG  896
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  GATATCCCATGAT-CCTTCTGCCATGTGAGATCACAAGTAGAGGATGAAG  899

seq1  TTGTTGCTTCCAGGCTACTTAGTCTGCAGTGTTTTGTTTAATCAACTCAA  946
       || |||||||||||||||||||||||||||||||| |||||| ||||||
seq2  GTG-TGCTTCCAGGCTACTTAGTCTGCAGTGTTTTG-TTAATC-ACTCAA  946

seq1  GCAGACTC-TGACATCGGATGGCAATAGTTATTATCTTTC-TGTCTAATT  994
      || ||||| ||||||||||| |||||||||| |||| ||| ||||||| |
seq2  GCGGACTCTTGACATCGGATTGCAATAGTTA-TATCCTTCTTGTCTAA-T  994

seq1  GTA-GTGGGTGTGAAAAAGAATTGTATTGCAGTTTCCTTTTACCTTTCTC  1043
      ||| | |||||||  |||| ||||  | |||| ||||   || |   |||
seq2  GTATGGGGGTGTG-CAAAGGATTGATTGGCAGGTTCC--ATAAC---CTC  1038

seq1  TAGAGTCAATGGATGCCTTATTCTTAGTAACTATATGTCTTCATTGGGGT  1093
      || ||   ||| ||||||   ||| || ||| ||||| ||  | ||||||
seq2  TA-AGAGCATGAATGCCT--ATCTGAG-AAC-ATATG-CT--ACTGGGGT  1080

seq1  AATATCTGTTCAGATTATATAC  1115
       ||| ||  |||||||||||||
seq2  -ATA-CTCGTCAGATTATATAC  1100