BAC Information

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BAC

Clone NameB6Ng01-194E17
Chromosome3 (Build37)
Map Location 145,145,496 - 145,277,985
singlet/doubletdoublet
Overlap geneCol24a1, 2410019A14Rik
Upstream geneHs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream geneCyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194E17.bB6Ng01-194E17.g
ACCGA017031GA017032
length1,071657
definitionB6Ng01-194E17.b B6Ng01-194E17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,145,496 - 145,146,303)(145,277,329 - 145,277,985)
sequence
gaattcattgtttttaattgcttagtagtagtccattatgtacatgtacc
tcattttctgtatccattcctctgttgaggggcatctgggttctttccag
cttctggctattataaataaggctgctatgaacatagtggagcatgtgtc
cttattaccagtcggaatatcttctgggtatatgcccaggaaaggaattg
ctggatcttccagtagtactatgtccaattttctgaggaaccaccagact
gatttccagagtggttgtacaagcttgcaatcccaccaacaatggaggag
tgttcctctttctccacatccttgccagcatctgctgtcacctgaatttt
ttatcttagccattctgactggtgtgaggtggaatgtcagggttgtttga
tttgcatttccctgatgattaaggatgttgaacattttttcaggtgcttc
tcagccattcggtattcctcagttgagaattctttgtttagctctgtacc
ccattttttaataggcttatttgattttctagagtccatcttcttgagtt
ctttatatatattggatattagttccctatctgatttaggattggtaaag
atcctttcccaatctgttggtggcctttttgtcttattgacgatgtcctt
tgccttacagaagctttgcaattttatgaggtcccatttgtcaattcttg
atcttacagcacaagccattgctgttctgttcaggaatttttcccctgtg
cacatatctgaagtatttttataaaaacctaatccatacgtgtttattag
aatttactgacagttgacaaatagtttgccagcttttactggttagtcat
tacagcttttcaagaccatgggcctgtgagccttcaatccaacattttaa
agacaaactgtcatcactggttttgagacagggccaattgtacgatgttt
taaggctaaagggagatgtgaagacacatatatatacatttagtggttga
taacgcttagttcacagaaaataagcctatttggttgtattttcccattt
ttttcattgtagtatcgattc
gaattcctctctgagcctctagacttccttggctggctggcgactccttc
ctcctgggacagcttttgccagagctgagcagcctggcccccagctgcgc
aggccctctccggtaagaggaaatgctttcagcttagtccattaacacaa
acattcaaaagcaaacactctaaagccacaggtcgtgttcgcataaataa
aacggatcgagaaaagcttcaccccaagaaaccaaaggggtattaaaaaa
aaataaaaaaataaaaaacctacccttgctttccaaggaggcaggcaaca
aagccgcagcaattccattggtttgtgtgctcagtggagctgggtggctg
aagccacaggcctttgaagaggaaatgccatccaaggtacaggcagccag
ccagcccctgagtcctgaaagtaacaggacagggaaggggaagggggcat
cgttaggaagtggaatgtggaagggacaagacagataaatgagactcatc
tagggacctcaccccatgaccaaaggacagggtaactcactgtgcccctg
agaccgagctggggcctggcaaattctaggtggcgggcacagcccagtga
ctaaggcttcgaggaggggtgtacgacctcgctgaggggtggagaggggt
ggtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_145145496_145146303
seq2: B6Ng01-194E17.b_302_1112

seq1  GTGGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTT  50

seq1  TCTCCACATCCTTGCCAGCATCTGCTGTCACCTGAATTTTTTATCTTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACATCCTTGCCAGCATCTGCTGTCACCTGAATTTTTTATCTTAGC  100

seq1  CATTCTGACTGGTGTGAGGTGGAATGTCAGGGTTGTTTGATTTGCATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGACTGGTGTGAGGTGGAATGTCAGGGTTGTTTGATTTGCATTTC  150

seq1  CCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCAGCCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCAGCCATTC  200

seq1  GGTATTCCTCAGTTGAGAATTCTTTGTTTAGCTCTGTACCCCATTTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCCTCAGTTGAGAATTCTTTGTTTAGCTCTGTACCCCATTTTTTA  250

seq1  ATAGGCTTATTTGATTTTCTAGAGTCCATCTTCTTGAGTTCTTTATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTTATTTGATTTTCTAGAGTCCATCTTCTTGAGTTCTTTATATAT  300

seq1  ATTGGATATTAGTTCCCTATCTGATTTAGGATTGGTAAAGATCCTTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATATTAGTTCCCTATCTGATTTAGGATTGGTAAAGATCCTTTCCC  350

seq1  AATCTGTTGGTGGCCTTTTTGTCTTATTGACGATGTCCTTTGCCTTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTTGGTGGCCTTTTTGTCTTATTGACGATGTCCTTTGCCTTACAG  400

seq1  AAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTTGATCTTACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTTGATCTTACAGC  450

seq1  ACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCACATATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCACATATCTG  500

seq1  AAGTATTTTTATAAAAACCTAATCCATACGTGTTTATTAGAATTTACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTTTATAAAAACCTAATCCATACGTGTTTATTAGAATTTACTGA  550

seq1  CAGTTGACAAATAGTTTGCCAGCTTTTACTGGTTAGTCATTACAGCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGACAAATAGTTTGCCAGCTTTTACTGGTTAGTCATTACAGCTTTT  600

seq1  CAAGACCATGGGCCTGTGAGCCTTCAAATCCAACATTTTAAAGACAAACT  650
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAAGACCATGGGCCTGTGAGCCTTC-AATCCAACATTTTAAAGACAAACT  649

seq1  GTCATCACTGGTTTTGAGACAGGGCCAATTGTACGATG-TTTAAGGCTAA  699
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTCATCACTGGTTTTGAGACAGGGCCAATTGTACGATGTTTTAAGGCTAA  699

seq1  AGGGAGATGTGAAAGACACATATATATACATTTAAGTGGGTGGATAACGC  749
      ||||||||||| ||||||||||||||||||||| ||| ||| ||||||||
seq2  AGGGAGATGTG-AAGACACATATATATACATTT-AGT-GGTTGATAACGC  746

seq1  TTAGTTCACAG-AAATAAGCATA-TTGGTTGTATTTTCC--ATTTTTTCA  795
      ||||||||||| |||||||| || |||||||||||||||   ||||||||
seq2  TTAGTTCACAGAAAATAAGCCTATTTGGTTGTATTTTCCCATTTTTTTCA  796

seq1  -TGTAGTATC-ATTC  808
       ||||||||| ||||
seq2  TTGTAGTATCGATTC  811

seq1: chr3_145277329_145277985
seq2: B6Ng01-194E17.g_62_718 (reverse)

seq1  CACCACCACCCCTCTCCACCCCTCAGCGAGGTCGTACACCCCTCCTCGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCACCCCTCTCCACCCCTCAGCGAGGTCGTACACCCCTCCTCGAA  50

seq1  GCCTTAGTCACTGGGCTGTGCCCGCCACCTAGAATTTGCCAGGCCCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGTCACTGGGCTGTGCCCGCCACCTAGAATTTGCCAGGCCCCAGC  100

seq1  TCGGTCTCAGGGGCACAGTGAGTTACCCTGTCCTTTGGTCATGGGGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTCTCAGGGGCACAGTGAGTTACCCTGTCCTTTGGTCATGGGGTGAG  150

seq1  GTCCCTAGATGAGTCTCATTTATCTGTCTTGTCCCTTCCACATTCCACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTAGATGAGTCTCATTTATCTGTCTTGTCCCTTCCACATTCCACTT  200

seq1  CCTAACGATGCCCCCTTCCCCTTCCCTGTCCTGTTACTTTCAGGACTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACGATGCCCCCTTCCCCTTCCCTGTCCTGTTACTTTCAGGACTCAG  250

seq1  GGGCTGGCTGGCTGCCTGTACCTTGGATGGCATTTCCTCTTCAAAGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGCTGGCTGCCTGTACCTTGGATGGCATTTCCTCTTCAAAGGCCT  300

seq1  GTGGCTTCAGCCACCCAGCTCCACTGAGCACACAAACCAATGGAATTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTCAGCCACCCAGCTCCACTGAGCACACAAACCAATGGAATTGCT  350

seq1  GCGGCTTTGTTGCCTGCCTCCTTGGAAAGCAAGGGTAGGTTTTTTATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTTTGTTGCCTGCCTCCTTGGAAAGCAAGGGTAGGTTTTTTATTTT  400

seq1  TTTATTTTTTTTTAATACCCCTTTGGTTTCTTGGGGTGAAGCTTTTCTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTTTTAATACCCCTTTGGTTTCTTGGGGTGAAGCTTTTCTCG  450

seq1  ATCCGTTTTATTTATGCGAACACGACCTGTGGCTTTAGAGTGTTTGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGTTTTATTTATGCGAACACGACCTGTGGCTTTAGAGTGTTTGCTTT  500

seq1  TGAATGTTTGTGTTAATGGACTAAGCTGAAAGCATTTCCTCTTACCGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTTTGTGTTAATGGACTAAGCTGAAAGCATTTCCTCTTACCGGAG  550

seq1  AGGGCCTGCGCAGCTGGGGGCCAGGCTGCTCAGCTCTGGCAAAAGCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTGCGCAGCTGGGGGCCAGGCTGCTCAGCTCTGGCAAAAGCTGTC  600

seq1  CCAGGAGGAAGGAGTCGCCAGCCAGCCAAGGAAGTCTAGAGGCTCAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGGAAGGAGTCGCCAGCCAGCCAAGGAAGTCTAGAGGCTCAGAGA  650

seq1  GGAATTC  657
      |||||||
seq2  GGAATTC  657