BAC Information

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BAC

Clone NameB6Ng01-194H22
Chromosome3 (Build37)
Map Location 124,861,272 - 124,956,279
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817, LOC668820
Downstream geneNdst4, Ugt8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194H22.bB6Ng01-194H22.g
ACCGA017174GA017175
length1,1351,153
definitionB6Ng01-194H22.b B6Ng01-194H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,861,272 - 124,862,418)(124,955,115 - 124,956,279)
sequence
gaattcaggtaaaagagaagatagtatcttccatgtttgtttatgtatag
ctgtattgataaatgtgtatgtatatgaatttttgtagttacatagagta
aaattcatttacttatacatgatatcattttttctttatattgccacttt
aaactgaacacaaagaaaaatagaactaaacagaaatatttcacctcttt
atgctatccagttcattgaaattgatattgatcatttgatgccttacata
ctaaaaattacaaggtcatttggatgtcaatataatcagtgcaaaagagg
ctgaacgttttttgcattctacatttgagtagtttcataatactttctgt
gaactttgcttgcagaaaaatgatactggtttttacataataatattcaa
acataggaaaacatttgtcaattttaacatcaaatactttatgaaatttt
tgtctgtttctttaaattcaaattatttaaaaatattttattacattaat
ttattgtgtggttggcctgttggccatggtcagagaaaagtcttcaagag
ttggtgctctctttcagcacagggatacccaggattgaattcaggttgtc
tggcatggtgggaagtacttttgctggctgaagcagctcggtgtcctata
agtttacattttagagttggtccccagatttcttggcttcaaacaagaaa
tgatcagtttcagtttcttgtagaaaatgactcaaactggtagaaataaa
attaaagcctcctcaatttcacatcgtggaaaatgaaacgttggaagtac
ggcataacagtttcttcagtggttatagtatcccgaaaggaaggccctta
tgtaggaggttaaacaattcaaaatactttcgcgaagtctctgaaacgga
ccagacatatttactagactccttccctcacagagtaaacaatagaactg
catggagaaaatcagatgagctgccttcttaatggaggagctagagaaat
tactcaggagctaaagggaactgcaccctatagtggacacatatgactac
agtaccgggatctctgtctttagctgcataatgtatcaagatggcctagt
tcgtcatcactgaagaaaggcccatttgaacttgc

gaattctgctgttttaattgaagtagaagacaaaggatgacagtgagctt
attctcctttcttgtttggcagtaccaggtgagtaaattctaaaagatga
gaactggaatctatctgtgagcttcaactggcatccaggctctcagcttt
acccatttcatgttctttctgaagtgcatgtagtcaagagagtagctgga
ctcttttgtcctcagcgcatgtaacagaaagggaagggaataactgtggt
gtttcttataattttaaataattattgcttggtcattgtgattttgcttc
attttataggtggagaaaaagttatggagagcaaaaataataacttttat
gaaactatatttaagtaatgacttctgtttctgttaacaagtctaattat
tcaaccaatacccatataaccgttcctttaataaaccctgtacaaacaaa
tcatgtactactgaagtttggcatttcactttacatatactgtgtgttgt
cttaaacatgatgaggagcagccaatgacctctttcagactaactgcagc
atgtggattattcagctattatgtctcctcctatcccacataatataaat
tattttacatagattaagtgaagtatcggttttggtctcttcaagtttat
tctttttaaaactgacatttgtgtggctgtcttcatagctttatgagaaa
atgtgcttaagaaaacttgttcaaggacagaacgcctatataaggggagt
tgtgaaatgcaatcagatacccgagtatagactcaaatcatagattaaag
agtggacgaaaacacaaagctacatatcatggtagagtcagtgcctgata
atgaaaaggtatcattttttgaaggtattttatgatgacaatgcattaat
cttaattcattctcaacatgttttggtaagtcatatactgattggaacct
atccattctattatagcttatattgcttctcataattttatataaaactt
gcttatctacctggtgatattattaaaaattatgtctattctagcaatct
ttttcatacaatcatgttcttgactgatattcctctattcatgtccaata
ttatggtagaatagaataattgaaataatacgattttctctaacttagca
aga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_124861272_124862418
seq2: B6Ng01-194H22.b_44_1178

seq1  GAATTCAGGTAAAAGAGAAGATAGTATCTTCCATGTTTGTTTATGTATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTAAAAGAGAAGATAGTATCTTCCATGTTTGTTTATGTATAG  50

seq1  CTGTATTGATAAATGTGTATGTATATGAATTTTTGTAGTTACATAGAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTGATAAATGTGTATGTATATGAATTTTTGTAGTTACATAGAGTA  100

seq1  AAATTCATTTACTTATACATGATATCATTTTTTCTTTATATTGCCACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATTTACTTATACATGATATCATTTTTTCTTTATATTGCCACTTT  150

seq1  AAACTGAACACAAAGAAAAATAGAACTAAACAGAAATATTTCACCTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAACACAAAGAAAAATAGAACTAAACAGAAATATTTCACCTCTTT  200

seq1  ATGCTATCCAGTTCATTGAAATTGATATTGATCATTTGATGCCTTACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATCCAGTTCATTGAAATTGATATTGATCATTTGATGCCTTACATA  250

seq1  CTAAAAATTACAAGGTCATTTGGATGTCAATATAATCAGTGCAAAAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATTACAAGGTCATTTGGATGTCAATATAATCAGTGCAAAAGAGG  300

seq1  CTGAACGTTTTTTGCATTCTACATTTGAGTAGTTTCATAATACTTTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACGTTTTTTGCATTCTACATTTGAGTAGTTTCATAATACTTTCTGT  350

seq1  GAACTTTGCTTGCAGAAAAATGATACTGGTTTTTACATAATAATATTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTGCTTGCAGAAAAATGATACTGGTTTTTACATAATAATATTCAA  400

seq1  ACATAGGAAAACATTTGTCAATTTTAACATCAAATACTTTATGAAATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGAAAACATTTGTCAATTTTAACATCAAATACTTTATGAAATTTT  450

seq1  TGTCTGTTTCTTTAAATTCAAATTATTTAAAAATATTTTATTACATTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTTCTTTAAATTCAAATTATTTAAAAATATTTTATTACATTAAT  500

seq1  TTATTGTGTGGTTGGCCTGTTGGCCATGGTCAGAGAAAAGTCTTCAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTGTGGTTGGCCTGTTGGCCATGGTCAGAGAAAAGTCTTCAAGAG  550

seq1  TTGGTGCTCTCTTTCAGCACAGGGATACCCAGGATTGAATTCAGGTTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCTCTCTTTCAGCACAGGGATACCCAGGATTGAATTCAGGTTGTC  600

seq1  TGGCATGGTGGGAAGTACTTTTGCTGGCTGAAGCAGCTCGGTGTCCTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGGTGGGAAGTACTTTTGCTGGCTGAAGCAGCTCGGTGTCCTATA  650

seq1  AGTTTACATTTTAGAGTTGGTCCCCAGATTTCTTGGCTTCAAACAAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACATTTTAGAGTTGGTCCCCAGATTTCTTGGCTTCAAACAAGAAA  700

seq1  TGATCAGTTTCAGTTTCTTGTAGAAAATGACTCAAACTGGTAGAAATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGTTTCAGTTTCTTGTAGAAAATGACTCAAACTGGTAGAAATAAA  750

seq1  ATTAAAGCCTCCTCAATTTCACATCGTGGAAAATGAAACGTTGGAAGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGCCTCCTCAATTTCACATCGTGGAAAATGAAACGTTGGAAGTAC  800

seq1  GGCATAACAGTTTCTTCAGTGGTTATAGTATCCCGAAAGGAAGGCCCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAACAGTTTCTTCAGTGGTTATAGTATCCCGAAAGGAAGGCCCTTA  850

seq1  TGTAGGAGGTTAAACAATTCAAAATACTTTCGCGAAGTCTCTGAAACGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGAGGTTAAACAATTCAAAATACTTTCGCGAAGTCTCTGAAACGGA  900

seq1  CCAGACATATTTACTAGACTCC-TCCCTCACAGAGTAAACAATAGAACTG  949
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCAGACATATTTACTAGACTCCTTCCCTCACAGAGTAAACAATAGAACTG  950

seq1  CATGGAGGAAATCAGATGAGCTGCCTTCTTAATGGAGGAGCTAGAGAAAT  999
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGAAAATCAGATGAGCTGCCTTCTTAATGGAGGAGCTAGAGAAAT  1000

seq1  TACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTGGAACAACAATAT  1049
      ||| | ||||||||||||||||||| |||||||| |||| |||   ||||
seq2  TACTC-AGGAGCTAAAGGGAACTGC-ACCCTATA-GTGG-ACA--CATAT  1044

seq1  GAACTAACCAGTACCCGGGATCTCTTGTCTTTAGCTGCAT-ATGTATCAA  1098
      | ||||  ||||| |||||||||| ||||||||||||||| |||||||  
seq2  G-ACTA--CAGTA-CCGGGATCTC-TGTCTTTAGCTGCATAATGTATC--  1087

seq1  AAGATGGCCTAGTCGGTCATCACTGGAAAGAGAGGCCCA-TTGGACTTGC  1147
      |||||||||||||  ||||||||||  |||| ||||||| ||| ||||||
seq2  AAGATGGCCTAGTTCGTCATCACTG--AAGAAAGGCCCATTTGAACTTGC  1135


seq1: chr3_124955115_124956279
seq2: B6Ng01-194H22.g_65_1217 (reverse)

seq1  TCTTGCTAAATGTAAGAGAAAATATGTACTAATTTTCATGTA-TCTA-TC  48
      |||||||||  || |||||||||  ||| ||  |||||  || |||| ||
seq2  TCTTGCTAA--GTTAGAGAAAAT-CGTATTA--TTTCAATTATTCTATTC  45

seq1  TA-CATAAATATGGACATGAATAGAGAATTATCAGTCAAG-ACATGATTG  96
      || |||||   ||||||||||||||| | ||||||||||| |||||||||
seq2  TACCATAATATTGGACATGAATAGAGGAATATCAGTCAAGAACATGATTG  95

seq1  TATGAAAAAGATTTTGCTAGGAAATAGACATAATTTTTTAATAATTATCA  146
      |||||||||||  |||||||  ||||||||||| |||||||||| |||||
seq2  TATGAAAAAGA--TTGCTAG--AATAGACATAA-TTTTTAATAA-TATCA  139

seq1  CCAGGGTAGATAAGCAAGTTTTATATAAAATTAATGAGAAGCAAATATTA  196
      ||| |||||||||||||||||||||||||||| ||||||||| |||| ||
seq2  CCA-GGTAGATAAGCAAGTTTTATATAAAATT-ATGAGAAGC-AATA-TA  185

seq1  AGCTATAATAGAATGGATAGGTTCCAATCAGTATATGACTTACCAAAACA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAATAGAATGGATAGGTTCCAATCAGTATATGACTTACCAAAACA  235

seq1  TGTTGAGAATGAATTAAGATTAATGCATTTGTCATCATAAAATACCTTC-  295
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  TGTTGAGAATGAATTAAGATTAATGCA-TTGTCATCATAAAATACCTTCA  284

seq1  AAAAATGATACCTTTTTCATTATCAGGCACTGACTCTACCATGATATGTA  345
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAAATGATACC-TTTTCATTATCAGGCACTGACTCTACCATGATATGTA  333

seq1  GCTTTGTGTTTTCGTCCACTCTTTAATCTATGATTTGAGTCTATACTCGG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTGTTTTCGTCCACTCTTTAATCTATGATTTGAGTCTATACTCGG  383

seq1  GTATCTGATTGCATTTCACAACTCCCCTTATATAGGCGTTCTGTCCTTGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGATTGCATTTCACAACTCCCCTTATATAGGCGTTCTGTCCTTGA  433

seq1  ACAAGTTTTCTTAAGCACATTTTCTCATAAAGCTATGAAGACAGCCACAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTTTCTTAAGCACATTTTCTCATAAAGCTATGAAGACAGCCACAC  483

seq1  AAATGTCAGTTTTAAAAAGAATAAACTTGAAGAGACCAAAACCGATACTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCAGTTTTAAAAAGAATAAACTTGAAGAGACCAAAACCGATACTT  533

seq1  CACTTAATCTATGTAAAATAATTTATATTATGTGGGATAGGAGGAGACAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAATCTATGTAAAATAATTTATATTATGTGGGATAGGAGGAGACAT  583

seq1  AATAGCTGAATAATCCACATGCTGCAGTTAGTCTGAAAGAGGTCATTGGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTGAATAATCCACATGCTGCAGTTAGTCTGAAAGAGGTCATTGGC  633

seq1  TGCTCCTCATCATGTTTAAGACAACACACAGTATATGTAAAGTGAAATGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTCATCATGTTTAAGACAACACACAGTATATGTAAAGTGAAATGC  683

seq1  CAAACTTCAGTAGTACATGATTTGTTTGTACAGGGTTTATTAAAGGAACG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTCAGTAGTACATGATTTGTTTGTACAGGGTTTATTAAAGGAACG  733

seq1  GTTATATGGGTATTGGTTGAATAATTAGACTTGTTAACAGAAACAGAAGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATGGGTATTGGTTGAATAATTAGACTTGTTAACAGAAACAGAAGT  783

seq1  CATTACTTAAATATAGTTTCATAAAAGTTATTATTTTTGCTCTCCATAAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTTAAATATAGTTTCATAAAAGTTATTATTTTTGCTCTCCATAAC  833

seq1  TTTTTCTCCACCTATAAAATGAAGCAAAATCACAATGACCAAGCAATAAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCCACCTATAAAATGAAGCAAAATCACAATGACCAAGCAATAAT  883

seq1  TATTTAAAATTATAAGAAACACCACAGTTATTCCCTTCCCTTTCTGTTAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAATTATAAGAAACACCACAGTTATTCCCTTCCCTTTCTGTTAC  933

seq1  ATGCGCTGAGGACAAAAGAGTCCAGCTACTCTCTTGACTACATGCACTTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCTGAGGACAAAAGAGTCCAGCTACTCTCTTGACTACATGCACTTC  983

seq1  AGAAAGAACATGAAATGGGTAAAGCTGAGAGCCTGGATGCCAGTTGAAGC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAACATGAAATGGGTAAAGCTGAGAGCCTGGATGCCAGTTGAAGC  1033

seq1  TCACAGATAGATTCCAGTTCTCATCTTTTAGAATTTACTCACCTGGTACT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGATAGATTCCAGTTCTCATCTTTTAGAATTTACTCACCTGGTACT  1083

seq1  GCCAAACAAGAAAGGAGAATAAGCTCACTGTCATCCTTTGTCTTCTACTT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACAAGAAAGGAGAATAAGCTCACTGTCATCCTTTGTCTTCTACTT  1133

seq1  CAATTAAAACAGCAGAATTC  1165
      ||||||||||||||||||||
seq2  CAATTAAAACAGCAGAATTC  1153


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