BAC Information

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BAC

Clone NameB6Ng01-194K09
Chromosome3 (Build37)3 (Build37)
Map Location 119,263,362 - 119,263,77281,908,058 - 81,909,183
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDpyd, LOC100043275
Downstream geneLOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194K09.bB6Ng01-194K09.g
ACCGA017284GA017285
length6211,141
definitionB6Ng01-194K09.b B6Ng01-194K09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(119,263,362 - 119,263,772)(81,908,058 - 81,909,183)
sequence
gaattctttatgtctctgtgatgaattgagttggaattttgatgggcatt
gcattgaatctgtagattgcttttggcaagatggccatttttactatgtg
aatcctacagatccatgagtatgggagatctttctatcttctgagttctt
ctttgatttctttcttcagagccttgaagttcttgtcaaatatacctttc
atttgcttgattattttatttgtgactattttgaagggtgttgtttcctt
aatttctttctcagcccatatatcctttgtgaaggggaaagcctactgat
atttttaaattaattttttattcagccactttgctgaagttgtttatcag
gtgtaggagttctttggtagaagtttttggttgtttatatatatactatc
ttcatgagatgggattttaggtcagaatcttgcttttcaggtgtgttagg
gtatccagggcttgctgtagtaggagaattgggttctaatggtactaagc
agcattggcttctgttgcttatattcttgtactcaccttctgccatctgg
ttatctctggtgttaactggccttgctatcttggactggagcctttccct
tctgtgagcctggttatgatg

gaattctttaaaatgtttgaaaaccagacccttctcatttatcataagct
atttccagctattttcatgcagaattggaaatgaggagacagtggatagg
aaggctggggaaccgtgattggtggtgagatctgactccatctgcagcca
ggtagccaagcaactctgtgaacaggctctttctgggggcgggggacggg
gggagatacagcataggagtccttaatagaaccagtgcaactagaaacag
gggatgacaagtacttctttggcacacacgttatctgtgtgatgaaaaca
gacttgcttctctctgttctgagagagcagccattctccacggacacagc
tagaaatcaacagtaaatcccacaagagaccatcaaacggaactgaactg
gtgccaattattttatctgtaattatacaagggcctcttcctcaccctcc
ctcaaaagaaaactcaaaactccctcagatttcctgtaagaaatttcaca
ggacaagggcttctagcctctccacaaaaaagaagacagggtctgcccat
tcccataaacattatatgcttcttcccagcacttaatatcctttatatgt
tgggctgaactctggagtaaccaaccgctgtgacaagccgaacagatgat
ttcagaggaagatgagacagttactcttactgctactgtctaaaatcaag
caaagcagtgtaagccagtaacgccttttaattgaacaaaactgggagga
ctggagattgtagttgtttccctttttataatatctgttttaaagaaatt
acatatttgatatctaggacacgctttgtctcgtcagaccctcagtgtct
agacagacacctaggtgttccctgacaccccctttaaagaatcctgggtc
ctgaaccataacacttagcatctacaaaatcttataatggttcggctcac
gaaagattctgagacgcgggtacgttattcgtggcctctggagggggcct
attgatgttgcttctttttaaaattgggggagatcactctgcctcaaaaa
gcagaaaaggagaggatggaattctgaaaggtgggatctttatttggagt
gttattctgctttgatggaaggcgaataaaatggtctgaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_119263362_119263772
seq2: B6Ng01-194K09.b_447_664 (reverse)

seq1  CATCATAACCAGGCTCACAGGTGAGAAACACCCACCCCAATACCTGGCCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  AACTTGGACGATCACTGGACCCGGCAGAGGTGCGACGTATCTCCGCTGCT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGAGACTCATCTTCCTTACAGCCTGCAACTCTGCCCAGGGAAGACTGGGA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TATCCAGATCCCGTCCCACACTCTGAGACAGCCTGATTTGAGGAGGTCCA  200
                                                      ||
seq2  ------------------------------------------------CA  2

seq1  TCAAAATGAGGCTCACAGGAGGGACAGGCTC----CCATCAGAACAAGGT  246
      ||| ||  |||||||||| ||||| ||||||    |||  | | ||||| 
seq2  TCATAACCAGGCTCACAGAAGGGAAAGGCTCCAGTCCAAGATAGCAAGGC  52

seq1  CAGTTAACAGCAGAGATAACCAGATGGTGAGAGGCAAGCACAAGGACAT-  295
      ||||||||| |||||||||||||||||    |||  || ||||| | || 
seq2  CAGTTAACACCAGAGATAACCAGATGGCAGAAGGTGAGTACAAGAATATA  102

seq1  AGAAATAGAAACCAATGCCACTTGGCACCATCAGACCCCAGTTCTCCTAC  345
      || || |||| |||||||  ||| | ||||| ||| |||| |||||||||
seq2  AGCAACAGAAGCCAATGCTGCTTAGTACCATTAGAACCCAATTCTCCTAC  152

seq1  CACAGCAGGCCTTGGATACCCTAACACACCTGAAAAGCAAGATTATGACC  395
       |||||| ||| |||||||||||||||||||||||||||||||| |||||
seq2  TACAGCAAGCCCTGGATACCCTAACACACCTGAAAAGCAAGATTCTGACC  202

seq1  TAAAATCCCATCTCAT  411
      ||||||||||||||||
seq2  TAAAATCCCATCTCAT  218


seq1: chr3_81908058_81909183
seq2: B6Ng01-194K09.g_65_1205

seq1  GAATTCTTTAAAATGTTTGAAAACCAGACCCTTCTCATTTATCATAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAATGTTTGAAAACCAGACCCTTCTCATTTATCATAAGCT  50

seq1  ATTTCCAGCTATTTTCATGCAGAATTGGAAATGAGGAGACAGTGGATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGCTATTTTCATGCAGAATTGGAAATGAGGAGACAGTGGATAGG  100

seq1  AAGGCTGGGGAACCGTGATTGGTGGTGAGATCTGACTCCATCTGCAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGGGGAACCGTGATTGGTGGTGAGATCTGACTCCATCTGCAGCCA  150

seq1  GGTAGCCAAGCAACTCTGTGAACAGGCTCTTTCTGGGGGCGGGGGACGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCCAAGCAACTCTGTGAACAGGCTCTTTCTGGGGGCGGGGGACGGG  200

seq1  GGGAGATACAGCATAGGAGTCCTTAATAGAACCAGTGCAACTAGAAACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATACAGCATAGGAGTCCTTAATAGAACCAGTGCAACTAGAAACAG  250

seq1  GGGATGACAAGTACTTCTTTGGCACACACGTTATCTGTGTGATGAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGACAAGTACTTCTTTGGCACACACGTTATCTGTGTGATGAAAACA  300

seq1  GACTTGCTTCTCTCTGTTCTGAGAGAGCAGCCATTCTCCACGGACACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCTTCTCTCTGTTCTGAGAGAGCAGCCATTCTCCACGGACACAGC  350

seq1  TAGAAATCAACAGTAAATCCCACAAGAGACCATCAAACGGAACTGAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATCAACAGTAAATCCCACAAGAGACCATCAAACGGAACTGAACTG  400

seq1  GTGCCAATTATTTTATCTGTAATTATACAAGGGCCTCTTCCTCACCCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAATTATTTTATCTGTAATTATACAAGGGCCTCTTCCTCACCCTCC  450

seq1  CTCAAAAGAAAACTCAAAACTCCCTCAGATTTCCTGTAAGAAATTTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAGAAAACTCAAAACTCCCTCAGATTTCCTGTAAGAAATTTCACA  500

seq1  GGACAAGGGCTTCTAGCCTCTCCACAAAAAAGAAGACAGGGTCTGCCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGGGCTTCTAGCCTCTCCACAAAAAAGAAGACAGGGTCTGCCCAT  550

seq1  TCCCATAAACATTATATGCTTCTTCCCAGCACTTAATATCCTTTATATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAAACATTATATGCTTCTTCCCAGCACTTAATATCCTTTATATGT  600

seq1  TGGGCTGAACTCTGGAGTAACCAACCGCTGTGACAAGCCGAACAGATGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGAACTCTGGAGTAACCAACCGCTGTGACAAGCCGAACAGATGAT  650

seq1  TTCAGAGGAAGATGAGACAGTTACTCTTACTGCTACTGTCTAAAATCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGGAAGATGAGACAGTTACTCTTACTGCTACTGTCTAAAATCAAG  700

seq1  CAAAGCAGTGTAAGCCAGTAACGCCTTTTAATTGAACAAAACTGGGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAGTGTAAGCCAGTAACGCCTTTTAATTGAACAAAACTGGGAGGA  750

seq1  CTGGAGATTGTAGTTGTTTCCC-TTTTATAATATCTGTTTTAAAGAAATT  799
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTGGAGATTGTAGTTGTTTCCCTTTTTATAATATCTGTTTTAAAGAAATT  800

seq1  ACATATTTGATATCTAGGACACGC-TTGTCTCGTCAGACCCTCAGTGTCT  848
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACATATTTGATATCTAGGACACGCTTTGTCTCGTCAGACCCTCAGTGTCT  850

seq1  AGACAGACACCTAGGTGTTCCCTGACACCCC--TTAAAGAATCCTGGGTC  896
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  AGACAGACACCTAGGTGTTCCCTGACACCCCCTTTAAAGAATCCTGGGTC  900

seq1  CTGAACCATAACACTTAGCATCTACAAAATCTTTATAATGGTTCGGCTCA  946
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGAACCATAACACTTAGCATCTACAAAATC-TTATAATGGTTCGGCTCA  949

seq1  CG-AAGATTCTGAGACGC-GGTACGTTATTCGTGG-CTCTGGAGGGGG-C  992
      || ||||||||||||||| |||||||||||||||| |||||||||||| |
seq2  CGAAAGATTCTGAGACGCGGGTACGTTATTCGTGGCCTCTGGAGGGGGCC  999

seq1  TATTGATGTTGCT--CTTTTAAAATT-GGGGAGATCACTCTG-CTCACAA  1038
      |||||||||||||   |||||||||| ||||||||||||||| |||| ||
seq2  TATTGATGTTGCTTCTTTTTAAAATTGGGGGAGATCACTCTGCCTCAAAA  1049

seq1  AGCAAGAAAAGGAGAGGATGGAA-TCTGAAGGTGGGGATCTTTAATTTGA  1087
      ||| ||||||||||||||||||| |||||| |  |||||||||| || ||
seq2  AGC-AGAAAAGGAGAGGATGGAATTCTGAAAGGTGGGATCTTTATTTGGA  1098

seq1  GTGT--ATCTGCCTTTGATGG-AGGCGATTAAA--TGTCTGAAG  1126
      ||||   |||| ||||||||| |||||| ||||   ||||||||
seq2  GTGTTATTCTG-CTTTGATGGAAGGCGAATAAAATGGTCTGAAG  1141


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