BAC Information

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BAC

Clone NameB6Ng01-195E09
Chromosome3 (Build37)
Map Location 78,478,530 - 78,479,703
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626461, LOC667526, LOC626479, LOC100041691
Downstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195E09.bB6Ng01-195E09.g
ACCGA017739GA017740
length1,1701,123
definitionB6Ng01-195E09.b B6Ng01-195E09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatccaaagcttccagtagtatgtatcatctgacactgccatct
tctcaagtggctttctatcactttcataaaggcatcacaggacttggtct
cagcaaggcacaaatggctcaagaaatcaacacaaatgctgctatgttag
agttgtcgccaattttctttcttttcagaaggtatgtatgttttgagaaa
gggtctcacgctgtatgccattactcatctggaatgattacatagcctag
gctgttcttgaactctcagtacttcttctttgcccccaaaagcctgaaag
tacctgagccaccatgccttgctaccatccatttttgttatgtagctgct
gtttcccttaataatttcctactatcatttccggctatcagatgactcac
agaaactgctaattgctttatacccaccgtgtaagctagaagacacactc
acaggtcttggagatgccagcttaaatttgacaatactatgagcagcagt
caagacataggtcatcttgagatgtgtctacacttttttcttttataatg
tctctatgttctatagcatggatgatgatcacatagcacacactcatttc
tccttagggaatggcataccataagcacactcaactttcagttatccaag
attcagacacatacttgaaggcatgcttatcatttcaagcagccgtcttc
tcaaaatctttcaatagctctttcgttgatcccacagtatctacagatca
gagggcaagccatggtgcgcttatctgaatctgtgtgttctgattggctt
tcagaggcatgttcattgaagtgaggtatcattgactgcgcaaacaaaat
taattccagtctggttgttactttttaccactgctataaaacaatcaatc
tttttctaggactgtggacttcatgactggcaaataataagtgtcaataa
atatttgctgaactattgaaaatgaaagctgccaactggactatgaaata
tgagcctggagttccgggaggagtctccagagactggtgtgtcagcttac
tctggacagacatcttggggtgttaggaaaggaaataacagtagctgact
ctgattccttaaggtttgcagaagtttcttgcctcacatgttgcttacaa
gctcaaggcaatctgagaat
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgtttatgtctcccttttcatttctgattttgttaa
ttaggattttgtccatgtgccctttagtgagtctagctaagggtttatct
atcttgttgattttctcaaagaaccaactcctcgtttggttaattctttg
aatagttcttcttgtttccacttgggttgatttcacccctgagtttgatt
atttcctgccgtctactcctctttgggtgaattttgcttccttttttttc
tagagcttttagattgcgtgtcaagctgctagtatgtgctctctcctgtt
tcttcttgaagcacttcatagctatgagtttcctcttagaaatgctttct
tgtgtcccaaggttgggaacgtgtggcttcattcattaactctagaaagt
tctttatactccttaatactttcccttgaccaaggaatctatggaaaaat
ggcttgttcagttccatgtacgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_78478530_78479703
seq2: B6Ng01-195E09.b_47_1216 (reverse)

seq1  ATTCTCAGATTG-CTTGAGCCTGTAAGCAACATTGTGA-GCAAGAAAC-T  47
      |||||||||||| ||||||| ||||||||||| ||||| ||||||||| |
seq2  ATTCTCAGATTGCCTTGAGCTTGTAAGCAACA-TGTGAGGCAAGAAACTT  49

seq1  CTGCAAACCCCTAGGGATCAGAGGTCAGCTACTGTTATTTCCTTTCCT-A  96
      |||||||||   ||| |||||| ||||||||||||||||||||||||| |
seq2  CTGCAAACCTTAAGGAATCAGA-GTCAGCTACTGTTATTTCCTTTCCTAA  98

seq1  CA-CCCAAGATTGTCTTGTCCAGAGTAAGGCTGACCACACCAGTTCTCTG  145
      || ||||||| |||| |||||||||||| ||||| |||||||| ||||||
seq2  CACCCCAAGA-TGTC-TGTCCAGAGTAA-GCTGA-CACACCAG-TCTCTG  143

seq1  GAGACTCCTCCCGGAACTCCAGGCTCATATTTCATAGTCCAGTTGGCAGC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCCTCCCGGAACTCCAGGCTCATATTTCATAGTCCAGTTGGCAGC  193

seq1  TTTCATTTTTCAATTAGTTCAGCAAATATTTATTGACACTTATTATTTGC  245
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTCA-TTTTCAA-TAGTTCAGCAAATATTTATTGACACTTATTATTTGC  241

seq1  CAGTCATGAAGTCCACAGTCCTAGAAAAAGATTGATTGTTTTATAGCAGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATGAAGTCCACAGTCCTAGAAAAAGATTGATTGTTTTATAGCAGT  291

seq1  GGTAAAAAGTAACAACCAGACTGGAATTAATTTTGTTTGCGCAGTCAATG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAAAGTAACAACCAGACTGGAATTAATTTTGTTTGCGCAGTCAATG  341

seq1  ATACCTCACTTCAATGAACATGCCTCTGAAAGCCAATCAGAACACACAGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCACTTCAATGAACATGCCTCTGAAAGCCAATCAGAACACACAGA  391

seq1  TTCAGATAAGCGCACCATGGCTTGCCCTCTGATCTGTAGATACTGTGGGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATAAGCGCACCATGGCTTGCCCTCTGATCTGTAGATACTGTGGGA  441

seq1  TCAACGAAAGAGCTATTGAAAGATTTTGAGAAGACGGCTGCTTGAAATGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACGAAAGAGCTATTGAAAGATTTTGAGAAGACGGCTGCTTGAAATGA  491

seq1  TAAGCATGCCTTCAAGTATGTGTCTGAATCTTGGATAACTGAAAGTTGAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATGCCTTCAAGTATGTGTCTGAATCTTGGATAACTGAAAGTTGAG  541

seq1  TGTGCTTATGGTATGCCATTCCCTAAGGAGAAATGAGTGTGTGCTATGTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTATGGTATGCCATTCCCTAAGGAGAAATGAGTGTGTGCTATGTG  591

seq1  ATCATCATCCATGCTATAGAACATAGAGACATTATAAAAGAAAAAAGTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCATCCATGCTATAGAACATAGAGACATTATAAAAGAAAAAAGTGT  641

seq1  AGACACATCTCAAGATGACCTATGTCTTGACTGCTGCTCATAGTATTGTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACATCTCAAGATGACCTATGTCTTGACTGCTGCTCATAGTATTGTC  691

seq1  AAATTTAAGCTGGCATCTCCAAGACCTGTGAGTGTGTCTTCTAGCTTACA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAGCTGGCATCTCCAAGACCTGTGAGTGTGTCTTCTAGCTTACA  741

seq1  CGGTGGGTATAAAGCAATTAGCAGTTTCTGTGAGTCATCTGATAGCCGGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGGTATAAAGCAATTAGCAGTTTCTGTGAGTCATCTGATAGCCGGA  791

seq1  AATGATAGTAGGAAATTATTAAGGGAAACAGCAGCTACATAACAAAAATG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAGTAGGAAATTATTAAGGGAAACAGCAGCTACATAACAAAAATG  841

seq1  GATGGTAGCAAGGCATGGTGGCTCAGGTACTTTCAGGCTTTTGGGGGCAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTAGCAAGGCATGGTGGCTCAGGTACTTTCAGGCTTTTGGGGGCAA  891

seq1  AGAAGAAGTACTGAGAGTTCAAGAACAGCCTAGGCTATGTAATCATTCCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGTACTGAGAGTTCAAGAACAGCCTAGGCTATGTAATCATTCCA  941

seq1  GATGAGTAATGGCATACAGCGTGAGACCCTTTCTCAAAACATACATACCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTAATGGCATACAGCGTGAGACCCTTTCTCAAAACATACATACCT  991

seq1  TCTGAAAAGAAAGAAAATTGGCGACAACTCTAACATAGCAGCATTTGTGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAAGAAAGAAAATTGGCGACAACTCTAACATAGCAGCATTTGTGT  1041

seq1  TGATTTCTTGAGCCATTTGTGCCTTGCTGAGACCAAGTCCTGTGATGCCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTTGAGCCATTTGTGCCTTGCTGAGACCAAGTCCTGTGATGCCT  1091

seq1  TTATGAAAGTGATAGAAAGCCACTTGAGAAGATGGCAGTGTCAGATGATA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAAGTGATAGAAAGCCACTTGAGAAGATGGCAGTGTCAGATGATA  1141

seq1  CATACTACTGGAAGCTTTGGATTGAATTC  1174
      |||||||||||||||||||||||||||||
seq2  CATACTACTGGAAGCTTTGGATTGAATTC  1170