BAC Information

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BAC

Clone NameB6Ng01-196F10
Chromosome3 (Build37)
Map Location 25,982,976 - 26,138,058
singlet/doubletdoublet
Overlap geneNlgn1
Upstream geneLOC100039592, LOC621017
Downstream geneLOC229152, Spata16, LOC665258, Ect2, Aadacl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196F10.bB6Ng01-196F10.g
ACCGA018507GA018508
length1,0481,144
definitionB6Ng01-196F10.b B6Ng01-196F10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,137,007 - 26,138,058)(25,982,976 - 25,984,147)
sequence
gaattcctgcataaaataacataggatcaaaacaaatatgcttgtttctt
tctaggacctggggaaaatattcattatttatttgtacagttaagtagat
tataagctacatattttctttgatttttcagattcagttccactgtattc
actggatggtgtcaagttggctaccagccccccaagtagttagaatcaca
agcatattataccttgctcattttttcaatataagagacttactaactta
tgggtttattgtctttttacaaagcaaggtattgactaacacttgtttat
cttgttggcttgacagagttaagagcatagtagtataaattactttttct
attgttttatttcataggctttctttttataaccattttatattttgtga
aaataatatgttgaatactggtttccccttctagtcatcattgttaatat
gataaattatccactgattaacttcaactattaagccattcttgcattcc
ctgtgtgagctttccttgctttggatattggtgatttcaattaggtaata
ttttctaaggattttttaccaatattagtaaaggatattaacctgagatt
tgtattatagtgaagttttattttggctttttgtggcacagtaaatttta
tcccacaaatggtaaagattctttcttttctacaattagaagttgttttt
gtcgttggaatgccttcctttttattatctgtaacaaagggaattcttgc
ataaaatcatatagttttgaactcttttatttagaatattttctattaat
tctaatttaaagcacctattttaaagggtcctttgcttgaatgtgtcttt
accggggatggtgttttctgtcttggcacccgtactgtcgtatggtgtat
tgggtctcttattctccattctgtgcagttggcaccttagtgatgacatg
tgttcttcctgatacaccttatttgtaaatacactacatattcctaatga
ttgagttctagtaattttatgatatacttttaaagaatatactttttt
gaattcttttgcagagattattatcttcatttcacaaaagagaaatataa
atctcagagcaattaggaagccttatgtactgtgtgggtgatagaaagga
cctgttgaaatataaaagataataaagacctattatcttcacttatattt
taaaatctaccaggtgtatttcttttaaataattcttatgcacttccaac
ttcatttctgtattgtgcaatgtgtttgtgtaataaaacctttccaattt
aaggttaaaaccaacatctcttgactgaagttaagtgaaccatcgactcg
ttttacacctacttcatttcacagctacaattatattttctcagcctaga
aaatcaaaacagagctatgggcaagctttgtcacctctctgactgtaaaa
gtaataatctaaaaaacacagtctcttatctattcactgattaaaataaa
cagtatttgtcaaaaagaagtggcagaaggccaaagttttatattgggtg
aaaaaagaatcgtgtcacaagttttcaacccaatgggatgtttagaaggc
agatgttgcttctgtcatatggacctcacttgcagtgagtgacttaacac
aaagcctcacatctttcttccccaaatgttacaaggtaaagaactaaata
cctctggcaatttttatctaggtctgaaagttcaaatttgtaacaaatac
atagagaatcacaaatatccccttacatttatttcataggtgttttctgt
tgtgtttgatgaatcaggaaataaaggaaaccatcattatagttcttcag
agtagtcaggatggcatatggagtgtctccactgtcatctcaaccagaac
tcagttttatgctttagatatcagacaaatttttatatattgcagacaac
taaagctatatgaatcatatcttggctatttcatgcctagaacatattcc
cttaatatgatgactttctgatcctttttgttcttcatagtacttacaga
ctgtcaaagcttacccatagaggatgttagcaacataatgcaagtgtggg
ctatcgaatgaactaattgtaagtcacggagctgaccaccatcttcttga
agggtaattgcagacgttaatgaaggtgtgtcctggatggcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_26137007_26138058
seq2: B6Ng01-196F10.b_44_1091 (reverse)

seq1  AAAAAAGTATATCTTTTAAAAAGTATATCAATAAAATTACTAAGAACTCA  50
      |||||||||||| | || ||||||||||| ||||||||||| ||||||||
seq2  AAAAAAGTATAT-TCTTTAAAAGTATATC-ATAAAATTACT-AGAACTCA  47

seq1  ATCATTTGGGAATATGTAGTGTATTTACAAATAAGGTGTATCAGGAAGAA  100
      |||| || |||||||||||||||||||||||||||||||||||||||| |
seq2  ATCA-TTAGGAATATGTAGTGTATTTACAAATAAGGTGTATCAGGAAG-A  95

seq1  ACACATGTCATCACTAAGGTGCCAACTGCACAGAATGGAGAATAAGAGA-  149
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACACATGTCATCACTAAGGTGCCAACTGCACAGAATGGAGAATAAGAGAC  145

seq1  CCAATACACCATACGACAGTACGGGTGCCAAGACAGAAAACACCATCCCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATACACCATACGACAGTACGGGTGCCAAGACAGAAAACACCATCCCC  195

seq1  GGTAAAGACACATTCAAGCAAAGGACCCTTTAAAATAGGTGCTTTAAATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGACACATTCAAGCAAAGGACCCTTTAAAATAGGTGCTTTAAATT  245

seq1  AGAATTAATAGAAAATATTCTAAATAAAAGAGTTCAAAACTATATGATTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAATAGAAAATATTCTAAATAAAAGAGTTCAAAACTATATGATTT  295

seq1  TATGCAAGAATTCCCTTTGTTACAGATAATAAAAAGGAAGGCATTCCAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAGAATTCCCTTTGTTACAGATAATAAAAAGGAAGGCATTCCAAC  345

seq1  GACAAAAACAACTTCTAATTGTAGAAAAGAAAGAATCTTTACCATTTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAACAACTTCTAATTGTAGAAAAGAAAGAATCTTTACCATTTGTG  395

seq1  GGATAAAATTTACTGTGCCACAAAAAGCCAAAATAAAACTTCACTATAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAATTTACTGTGCCACAAAAAGCCAAAATAAAACTTCACTATAAT  445

seq1  ACAAATCTCAGGTTAATATCCTTTACTAATATTGGTAAAAAATCCTTAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCTCAGGTTAATATCCTTTACTAATATTGGTAAAAAATCCTTAGA  495

seq1  AAATATTACCTAATTGAAATCACCAATATCCAAAGCAAGGAAAGCTCACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTACCTAATTGAAATCACCAATATCCAAAGCAAGGAAAGCTCACA  545

seq1  CAGGGAATGCAAGAATGGCTTAATAGTTGAAGTTAATCAGTGGATAATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAATGCAAGAATGGCTTAATAGTTGAAGTTAATCAGTGGATAATTT  595

seq1  ATCATATTAACAATGATGACTAGAAGGGGAAACCAGTATTCAACATATTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATTAACAATGATGACTAGAAGGGGAAACCAGTATTCAACATATTA  645

seq1  TTTTCACAAAATATAAAATGGTTATAAAAAGAAAGCCTATGAAATAAAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAAAATATAAAATGGTTATAAAAAGAAAGCCTATGAAATAAAAC  695

seq1  AATAGAAAAAGTAATTTATACTACTATGCTCTTAACTCTGTCAAGCCAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAAAGTAATTTATACTACTATGCTCTTAACTCTGTCAAGCCAAC  745

seq1  AAGATAAACAAGTGTTAGTCAATACCTTGCTTTGTAAAAAGACAATAAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAACAAGTGTTAGTCAATACCTTGCTTTGTAAAAAGACAATAAAC  795

seq1  CCATAAGTTAGTAAGTCTCTTATATTGAAAAAATGAGCAAGGTATAATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGTTAGTAAGTCTCTTATATTGAAAAAATGAGCAAGGTATAATAT  845

seq1  GCTTGTGATTCTAACTACTTGGGGGGCTGGTAGCCAACTTGACACCATCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGATTCTAACTACTTGGGGGGCTGGTAGCCAACTTGACACCATCC  895

seq1  AGTGAATACAGTGGAACTGAATCTGAAAAATCAAAGAAAATATGTAGCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATACAGTGGAACTGAATCTGAAAAATCAAAGAAAATATGTAGCTT  945

seq1  ATAATCTACTTAACTGTACAAATAAATAATGAATATTTTCCCCAGGTCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTACTTAACTGTACAAATAAATAATGAATATTTTCCCCAGGTCCT  995

seq1  AGAAAGAAACAAGCATATTTGTTTTGATCCTATGTTATTTTATGCAGGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAACAAGCATATTTGTTTTGATCCTATGTTATTTTATGCAGGAA  1045

seq1  TTC  1052
      |||
seq2  TTC  1048

seq1: chr3_25982976_25984147
seq2: B6Ng01-196F10.g_68_1211

seq1  GAATTCTTTTGCAGAGATTATTATCTTCATTTCACAAAAGAGAAATATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGCAGAGATTATTATCTTCATTTCACAAAAGAGAAATATAA  50

seq1  ATCTCAGAGCAATTAGGAAGCCTTATGTACTGTGTGGGTGATAGAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGAGCAATTAGGAAGCCTTATGTACTGTGTGGGTGATAGAAAGGA  100

seq1  CCTGTTGAAATATAAAAGATAATAAAGACCTATTATCTTCACTTATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGAAATATAAAAGATAATAAAGACCTATTATCTTCACTTATATTT  150

seq1  TAAAATCTACCAGGTGTATTTCTTTTAAATAATTCTTATGCACTTCCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTACCAGGTGTATTTCTTTTAAATAATTCTTATGCACTTCCAAC  200

seq1  TTCATTTCTGTATTGTGCAATGTGTTTGTGTAATAAAACCTTTCCAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCTGTATTGTGCAATGTGTTTGTGTAATAAAACCTTTCCAATTT  250

seq1  AAGGTTAAAACCAACATCTCTTGACTGAAGTTAAGTGAACCATCGACTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAAAACCAACATCTCTTGACTGAAGTTAAGTGAACCATCGACTCG  300

seq1  TTTTACACCTACTTCATTTCACAGCTACAATTATATTTTCTCAGCCTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACACCTACTTCATTTCACAGCTACAATTATATTTTCTCAGCCTAGA  350

seq1  AAATCAAAACAGAGCTATGGGCAAGCTTTGTCACCTCTCTGACTGTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAACAGAGCTATGGGCAAGCTTTGTCACCTCTCTGACTGTAAAA  400

seq1  GTAATAATCTAAAAAACACAGTCTCTTATCTATTCACTGATTAAAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAATCTAAAAAACACAGTCTCTTATCTATTCACTGATTAAAATAAA  450

seq1  CAGTATTTGTCAAAAAGAAGTGGCAGAAGGCCAAAGTTTTATATTGGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTTGTCAAAAAGAAGTGGCAGAAGGCCAAAGTTTTATATTGGGTG  500

seq1  AAAAAAGAATCGTGTCACAAGTTTTCAACCCAATGGGATGTTTAGAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAATCGTGTCACAAGTTTTCAACCCAATGGGATGTTTAGAAGGC  550

seq1  AGATGTTGCTTCTGTCATATGGACCTCACTTGCAGTGAGTGACTTAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTGCTTCTGTCATATGGACCTCACTTGCAGTGAGTGACTTAACAC  600

seq1  AAAGCCTCACATCTTTCTTCCCCAAATGTTACAAGGTAAAGAACTAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTCACATCTTTCTTCCCCAAATGTTACAAGGTAAAGAACTAAATA  650

seq1  CCTCTGGCAATTTTTATCTAGGTCTGAAAGTTCAAATTTGTAACAAATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGCAATTTTTATCTAGGTCTGAAAGTTCAAATTTGTAACAAATAC  700

seq1  ATAGAGAATCACAAATATCCCCTTACATTTATTTCATAGGTGTTTTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAATCACAAATATCCCCTTACATTTATTTCATAGGTGTTTTCTGT  750

seq1  TGTGTTTGATGAATCAGGAAATAAAGGAAACCATCATTATAGTTCTTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGATGAATCAGGAAATAAAGGAAACCATCATTATAGTTCTTCAG  800

seq1  AGTAGTCAGGATGGCATATGGAGTGTCTCCACTGTCATCTCAACCAGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCAGGATGGCATATGGAGTGTCTCCACTGTCATCTCAACCAGAAC  850

seq1  TCAGTTTTATGCTTTAAGATATCAGACAAATTTTTATATATTGCAGAACA  900
      ||||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  TCAGTTTTATGCTTT-AGATATCAGACAAATTTTTATATATTGCAG-ACA  898

seq1  ACTAAGGCTATATGAATCATATCTTGGCTATTTTCATGCCTTAGAACATA  950
      ||||| |||||||||||||||||||||||| ||||||||| |||||||||
seq2  ACTAAAGCTATATGAATCATATCTTGGCTA-TTTCATGCC-TAGAACATA  946

seq1  TTCCCTT-ATATGATGACTTTCTGATTCCTTTTG-TCTTCCAATAGTAAC  998
      ||||||| |||||||||||||||||| | ||||| |||||  ||||||  
seq2  TTCCCTTAATATGATGACTTTCTGATCCTTTTTGTTCTTC--ATAGTA--  992

seq1  TTTACAGAACTGTCAAAGCTTACCCATAGAGGAATGGTAGCAACAATAAT  1048
       |||||| |||||||||||||||||||||||| ||| ||||||| |||||
seq2  CTTACAG-ACTGTCAAAGCTTACCCATAGAGG-ATGTTAGCAAC-ATAAT  1039

seq1  GCAAAGTGTGGGCTATTCGATTTGAACATTATTTAAATAAAGTCACGGAG  1098
      || |||||||||||| ||||  |||||  || ||     |||||||||||
seq2  GC-AAGTGTGGGCTA-TCGA-ATGAAC--TAATT---GTAAGTCACGGAG  1081

seq1  CTTTGGACCCACCATCTTCTTTGTAGGTGAAAATAGCAGGACAGTTAAAA  1148
      ||   || |||||||||||||    |||   ||| ||| ||| |||||  
seq2  CT---GA-CCACCATCTTCTTGAAGGGT---AATTGCA-GAC-GTTAA--  1120

seq1  TAGAAAGTGTGT-CTGGATGGCCTT  1172
        ||| |||||| ||||||||||||
seq2  -TGAAGGTGTGTCCTGGATGGCCTT  1144