BAC Information

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BAC

Clone NameB6Ng01-196H03
Chromosome3 (Build37)
Map Location 44,218,682 - 44,219,733
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039264
Downstream geneLOC676484, LOC100039296, Pcdh10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196H03.b
ACCGA018585
length1,044
definitionB6Ng01-196H03.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcatatgttaggtattttatagcgcaagcatttgcctcctgttt
tgtttgtttgcttatttttttttttttttttttttttttagtatttgtcc
ttgaacatgtttgacagaaaagattttaggactctttattttttaaaatc
gggacaaaattcaaattaaaaaatgaaattagacaaaacaattgtaacca
tatgtgccattttctgtatataattcgtagcataattgtcatttgtgtaa
aatgaatattggggcgtcaatctacttggaacatgtaaaataattggcat
tcatgtttctttttctgggtttattaggatgacatgatctgtgcttccat
ctattctattgacacataatatctatctctgaatgttactcaactgtatg
tgaacactgacattttctttacctatatttctgtaatagatatctaagct
aactctataacctggttactgaaaacaatgtcacaataattaagaatgct
gtatctctattttatgacactatcaattctttatggtataatgtttctgg
gaaaattggatgtaccctgtataagactaaaactagtaccacattcctca
gcatttgcaatgttttgtattttgtatgaaacattcaacactgatgtatg
ccctatgaatctagaataataaattaacacaatataagagaagcaattga
aatttaatcatatatgaaagatttatttggtatctttactgcttgttgta
aacaataagtccttaaatattttgaagattttataatagaatgttcatgt
ttgggattatcaaatgacatacatcaaattcaaatgagcaaatttgtaag
aaaatataatgaagtttgattatatgtcatatagtttaaatttcctgagt
atactcttaaatgtgagaagagtgttaagaggaaaaatactggtaagcta
aagtaaattattgaaatatctcctaagtcaaaaatatctctcaataactg
taaatacaacaaaggcataggaatagttttaacactgatctttt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_44218682_44219733
seq2: B6Ng01-196H03.b_39_1082

seq1  GAATTCTCATATGTTAGGTATTTTATAGCGCAAGCATTTGCCTCCTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATATGTTAGGTATTTTATAGCGCAAGCATTTGCCTCCTGTTT  50

seq1  TGTTTGTTTGCTTATTTTTTTTTTTTTTTTTTTTTTTTTAGTATTTGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGCTTATTTTTTTTTTTTTTTTTTTTTTTTTAGTATTTGTCC  100

seq1  TTGAACATGTTTGACAGAAAAGATTTTAGGACTCTTTATTTTTTAAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACATGTTTGACAGAAAAGATTTTAGGACTCTTTATTTTTTAAAATC  150

seq1  GGGACAAAATTCAAATTAAAAAATGAAATTAGACAAAACAATTGTAACAA  200
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGGACAAAATTCAAATTAAAAAATGAAATTAGACAAAACAATTGTAACCA  200

seq1  TATGTGCCATTTTCTGTAGATAATTCGTAGCATAATTGTCATTTGTATAA  250
      |||||||||||||||||| ||||||||||||||||||||||||||| |||
seq2  TATGTGCCATTTTCTGTATATAATTCGTAGCATAATTGTCATTTGTGTAA  250

seq1  AATGAATATTGTGGCATCAATCTAGTTGGAACATGTAAAATAATTGGCAT  300
      ||||||||||| ||| |||||||| |||||||||||||||||||||||||
seq2  AATGAATATTGGGGCGTCAATCTACTTGGAACATGTAAAATAATTGGCAT  300

seq1  TCATGTTTCTTTTTCTGGGTTTATTAGGATGACATGATCTGTGCTTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTCTTTTTCTGGGTTTATTAGGATGACATGATCTGTGCTTCCAT  350

seq1  CTATTCTATTGACACATAATATCTATCTCTGAATGTTACTCAACTGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTATTGACACATAATATCTATCTCTGAATGTTACTCAACTGTATG  400

seq1  TGAACACTGACATTTTCTTTACCTATATTTCTGTAGTAGATATCTAAGCT  450
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGAACACTGACATTTTCTTTACCTATATTTCTGTAATAGATATCTAAGCT  450

seq1  AACTCTATAACCTGGTTACTGAAAACAATGTCACAATAATTAAGAATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTATAACCTGGTTACTGAAAACAATGTCACAATAATTAAGAATGCT  500

seq1  GTATCTCTATTTTATGACACTATCAATTCTTTATGGTATAATGTTTCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTCTATTTTATGACACTATCAATTCTTTATGGTATAATGTTTCTGG  550

seq1  GAAAATTGGATGTACCCTGTATAAGACTAAAACTAGTACCACATTCCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGGATGTACCCTGTATAAGACTAAAACTAGTACCACATTCCTCA  600

seq1  GCATTTGCAATGTTTTGTATTTTGTATGAAACATTCAACACTGATGTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGCAATGTTTTGTATTTTGTATGAAACATTCAACACTGATGTATG  650

seq1  CCCTATGAATCTAGAATAATAAATTAACACAATATAAGAGAAGCAATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGAATCTAGAATAATAAATTAACACAATATAAGAGAAGCAATTGA  700

seq1  AATTTAATCATATATGAAAGATTTATTTGGTATCTTTACTGCTTGTTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATCATATATGAAAGATTTATTTGGTATCTTTACTGCTTGTTGTA  750

seq1  AACAATAAGTCCTTAAAATATTTTGAAGATTTTATAATAGAATGTTCATG  800
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AACAATAAGTCCTT-AAATATTTTGAAGATTTTATAATAGAATGTTCATG  799

seq1  TTTGGGATTATCAAATGACATACATCAAATTCAAAATGAGCAAAATTTGT  850
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  TTTGGGATTATCAAATGACATACATCAAATTC-AAATGAGC-AAATTTGT  847

seq1  AAGAAAATATAAGGAAGTTTGATTATATGTCATATAAGTTTAAATTTCCT  900
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  AAGAAAATATAATGAAGTTTGATTATATGTCATAT-AGTTTAAATTTCCT  896

seq1  GAGTATACTCTTAAATGTGAGAAGAGTGTTAAGAGGAAAAATACTGGTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATACTCTTAAATGTGAGAAGAGTGTTAAGAGGAAAAATACTGGTAA  946

seq1  GCTAAAGTAAATTATTGAAATATCTCCTAAGTCAAAAATATCTCTCAATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCTAAAGTAAATTATTGAAATATCTCCTAAGTCAAAAATATCTCTCAAT-  995

seq1  AACTGTAAATACAAACAAGGCATAGGAATAAGTTTTTAAACACTGATCTT  1050
      ||||||||||||||  ||||||||||||| ||||||  ||||||||||||
seq2  AACTGTAAATACAACAAAGGCATAGGAAT-AGTTTT--AACACTGATCTT  1042

seq1  TT  1052
      ||
seq2  TT  1044