BAC Information

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BAC

Clone NameB6Ng01-196J12
Chromosome3 (Build37)
Map Location 123,761,917 - 123,762,981
singlet/doubletsinglet
Overlap genenone
Upstream geneSynpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
Downstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817, LOC668820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196J12.bB6Ng01-196J12.g
ACCGA018694GA018695
length1,051919
definitionB6Ng01-196J12.b B6Ng01-196J12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctacttactggcttgtttcttctggcttgctaaactgtctttctc
acatagctcaggccagtctgcctacagatggcactgctcaaagtaggcta
gatgcttctaaataaatcagtaaataaggaaatgctccacagactttccg
ataggccagtctgatggaagaggaaccttagctgaggttcatgtttgcaa
taaattgagaaaactaaccaacttaagtgttgggagcgcttttaactaac
atacgcttcagagagaacaagacgataagagggatgttcagttgtaaggt
gtggaaaatctgtgatggtttaatatactaagacaggaaggaaatgagga
aaggtcattttaattacaaaatgttggtttcgaggttgatgcatttacag
tggtttgaatatccctcagttcttatgaaagaccaagaaagatccacata
ttatactgtctaggtaaaaacatgtaaatgaagaaaaatacaaagagaat
gcatgaaaagacaaaacaggagccttcaaaatgattgagcggagcctgac
catcaagctcattacctgaactccagaacagcctagatgaagaagccaac
agacacctgcacaatgtcctctgttctttcatatgctatgaagcatgtac
atacagagacattaaataagtatttttaatggaaaagaaggtataacaaa
gaatatggaagcagaaaaaaaaaatcaagagactgtgatggtacaaaagt
taaagagaggattttagaaagcaagtgtggtaattttttttaattaggta
gaaaattcttcacagggacagaggcaggtgtgatactaattaatgttaca
agcaggtcaacaaacagcaatatgatggtgaagaaacaggaaggaaatat
aatgctgagcaatattattgtctactgtccactccctgagttagataatg
tgtataagtaaacctgtgacctccaatgattcaacacatagcagtctaat
aaaatatattaacacgacagactcatgtgttttgtatttaggaatatata
g

gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agtttagatcttcttttgaagggtctgatagaactctgcactaaaccccg
tctggtcctggggcttttttttggctggggagactattaaataactgcct
tctattttctttagggggatatgggactgtttagaaaggtcaactttgat
cctgatttcaacttttggtacctgggtatctggtccagaaattttgtccc
ttttcgtcaaggttttccaagtttttgttgagtataagcctttttgtaaa
aagaatctgaatggggttttggaattccttcaggatcctgttgttatgtc
ttcccttttcattttcggattttgtaaatagggatttttgtccctggggc
cctttagggagtctaggtaagggtttattctatcttggttgatttttctc
caagaaccactccttcgttgggtttaattcttttgaatatgtccttcttg
ttttcatctgggttgattccaccccctgagttcgatttattccctgcgct
ctaactcctcctgggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_123761917_123762981
seq2: B6Ng01-196J12.b_45_1095 (reverse)

seq1  CTATATATTCTAAAATAACAAAACACATGAGTCCTGTTCGTGTATATAT-  49
      ||||||||||  |||| ||||||||||||||| ||| ||||||  |||| 
seq2  CTATATATTCCTAAAT-ACAAAACACATGAGT-CTG-TCGTGTTAATATA  47

seq1  TTTTATTAAGACTGCTATGTGTTTGAAATCATTTGGAGGTCACAGGTTTA  99
      ||||||| |||||||||||||||   ||||| ||||||||||||||||||
seq2  TTTTATT-AGACTGCTATGTGTT--GAATCA-TTGGAGGTCACAGGTTTA  93

seq1  ACTATTAACACATTAATTCTAACTCAGGGAGTGGACAAGTAGAC-ATAAT  148
        |||  ||||||||  ||||||||||||||||||| ||||||| |||||
seq2  CTTAT--ACACATTA--TCTAACTCAGGGAGTGGAC-AGTAGACAATAAT  138

seq1  ATTGCTCAGCCATTTATATTTCCCTTCCTGTTTCTTTCACCATCATATTG  198
      ||||||||||   |||||||| |||||||||||| |||||||||||||||
seq2  ATTGCTCAGC--ATTATATTT-CCTTCCTGTTTC-TTCACCATCATATTG  184

seq1  CTGTTTTGTTGACCTGCCTTGTAACATTAATTAGTATCACACCTGCCTCT  248
      ||| |||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTG-TTTGTTGACCTG-CTTGTAACATTAATTAGTATCACACCTGCCTCT  232

seq1  GT-CCTGTGAAGAATTTTCTACCTAATTAAAAAAAATTACCACACTTGCT  297
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGTGAAGAATTTTCTACCTAATTAAAAAAAATTACCACACTTGCT  282

seq1  TTCTAAAATCCTCTCTTTAACTTTTGTACCATCACAGTCTCTTGATTTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAATCCTCTCTTTAACTTTTGTACCATCACAGTCTCTTGATTTTT  332

seq1  TTTTTCTGCTTCCATATTCTTTGTTATACCTTCTTTTCCATTAAAAATAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGCTTCCATATTCTTTGTTATACCTTCTTTTCCATTAAAAATAC  382

seq1  TTATTTAATGTCTCTGTATGTACATGCTTCATAGCATATG-AAGAACAGA  446
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTATTTAATGTCTCTGTATGTACATGCTTCATAGCATATGAAAGAACAGA  432

seq1  GGACATTGTGCAGGTGTCTGTTGGCTTCTTCATCTAGGCTGTTCTGGAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTGTGCAGGTGTCTGTTGGCTTCTTCATCTAGGCTGTTCTGGAGT  482

seq1  TCAGGTAATGAGCTTGATGGTCAGGCTCCGCTCAATCATTTTGAAGGCTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAATGAGCTTGATGGTCAGGCTCCGCTCAATCATTTTGAAGGCTC  532

seq1  CTGTTTTGTCTTTTCATGCATTCTCTTTGTATTTTTCTTCATTTACATGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGTCTTTTCATGCATTCTCTTTGTATTTTTCTTCATTTACATGT  582

seq1  TTTTACCTAGACAGTATAATATGTGGATCTTTCTTGGTCTTTCATAAGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCTAGACAGTATAATATGTGGATCTTTCTTGGTCTTTCATAAGAA  632

seq1  CTGAGGGATATTCAAACCACTGTAAATGCATCAACCTCGAAACCAACATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGATATTCAAACCACTGTAAATGCATCAACCTCGAAACCAACATT  682

seq1  TTGTAATTAAAATGACCTTTCCTCATTTCCTTCCTGTCTTAGTATATTAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTAAAATGACCTTTCCTCATTTCCTTCCTGTCTTAGTATATTAA  732

seq1  ACCATCACAGATTTTCCACACCTTACAACTGAACATCCCTCTTATCGTCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCACAGATTTTCCACACCTTACAACTGAACATCCCTCTTATCGTCT  782

seq1  TGTTCTCTCTGAAGCGTATGTTAGTTAAAAGCGCTCCCAACACTTAAGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTCTGAAGCGTATGTTAGTTAAAAGCGCTCCCAACACTTAAGTT  832

seq1  GGTTAGTTTTCTCAATTTATTGCAAACATGAACCTCAGCTAAGGTTCCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTTTTCTCAATTTATTGCAAACATGAACCTCAGCTAAGGTTCCTC  882

seq1  TTCCATCAGACTGGCCTATCGGAAAGTCTGTGGAGCATTTCCTTATTTAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCAGACTGGCCTATCGGAAAGTCTGTGGAGCATTTCCTTATTTAC  932

seq1  TGATTTATTTAGAAGCATCTAGCCTACTTTGAGCAGTGCCATCTGTAGGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTATTTAGAAGCATCTAGCCTACTTTGAGCAGTGCCATCTGTAGGC  982

seq1  AGACTGGCCTGAGCTATGTGAGAAAGACAGTTTAGCAAGCCAGAAGAAAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGCCTGAGCTATGTGAGAAAGACAGTTTAGCAAGCCAGAAGAAAC  1032

seq1  AAGCCAGTAAGTAGAATTC  1065
      |||||||||||||||||||
seq2  AAGCCAGTAAGTAGAATTC  1051


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