BAC Information

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BAC

Clone NameB6Ng01-196L22
Chromosome3 (Build37)
Map Location 95,762,955 - 95,917,077
singlet/doubletdoublet
Overlap geneLOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b
Upstream geneRfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e
Downstream geneMtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196L22.bB6Ng01-196L22.g
ACCGA018801GA018802
length1,093936
definitionB6Ng01-196L22.b B6Ng01-196L22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,915,982 - 95,917,077)(95,762,955 - 95,763,886)
sequence
gaattcaaatctgagtgcaatgtctgatttatcactgcctgtttgtttct
gtttggttgaggttttgtttgttgttgctgttttctgagacagagtctca
ttctgtcctgatactatgttacccaggctgggttcaaacaccacaaagtc
cttctacctcagcctactaagtactgggattacaggcatgagccaccaag
ctggctgggacaggaggacaatgacaaagttatactactgtggcacagga
tagcctcaaactcatgatcctcctgtatcagccccctaagtgctagaatt
acagaaggaggccaccatactcagccatagcctactcctaataacaaaag
tttcactggctcaacttaaaaataagtttaagagaaaacaacttaaaggg
aatttagtgggaaagaaaaatagatttacacactcagtaaaaccttgact
cccttctacatctacctattagagctgatcaatctccaacacactgctcc
tttcccttctgggtccctcctcaggggtactttcaatacaacagtttgtc
agtcaaaccttgggaaggaccactgttctctttggtttaaaaggacagtg
gaatggaggtaataagccattctgtggtctagcacaacacaaggtgggag
aaggaaacaaacactgaaatagggctggagagaaaacagtgtggtgacct
cacatttattaatcacctgccaaaggccagccactgaaaattcaattgta
cactgagctatcaaaactactctggttctgattaaatcctcagtagtcta
tttgaaaattaataagaaagcatcataattcctccaattttctctataaa
attcaccaaccaatatgctctggttaaacaggaaattacaaggtcctttg
cgtcgttctcctagagcacactttatataccactgagataccctttcttg
gatttgaaacttatccccatatgattataatccttattactcatcattta
ctgcactataagataacggtctccaatgtagagccacatgctagcatgca
tgaaacactatgttcaaattctcagcatcacaaaataaacaca
gaattctaattgagaatggtgtaggtttttgaaacctaaaagtcctctcc
ctctgtgacacacatcttccaagaaggccccatgtcctcatccttcctaa
acagttctatcaactggggaccaagcatcaaatagatgagccgctgggca
attgtattgcaagccatcacagtgctccaaagtgccgacaaacaagattt
taagttccataactaagaaccatctgtaactccagcctgagtagttctga
tgccctcttctggcttctacaggtactgcacacatttgatacatagccat
acatttaggcaaactattcatatccattcgtcttagagttactattgctg
tggtgaaacgccacgtccaagagcacctttggggaggaaagggtttgttt
ggcttatgtatcccaagttacagtccactaagggaagccaaggcaggaac
tcaaacagggcaggaacctggaggcaggagctgatgcagaagccatggag
ggctgctgcttactggcttgctcctcatggcttgctcagcctgctttcgt
atagaaccagatatagcattgcccacagtgagctggtctctcccacaaca
attgctaattaagaaatgccagtcaagcttgcctacaggccaatctattg
gaggtcttttctcagttgaggtttccctcttcccagatgactctagcttg
tgtcaagttgaccaaaaacaaaaacaaaacaaacaaaaacaaaatcaaac
aaaaacacaaacaaacaaacaaaaccccaaaacaagcaaaaacttactaa
atttctatcatagcttggtgttgatcttaaaagcataagttaaagaaatg
gactttcaattcatcctgctggactaacaaaacaactggaaggaacttta
ttaactggaaatagccttccctaagagggatcatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95915982_95917077
seq2: B6Ng01-196L22.b_48_1140 (reverse)

seq1  TGTGTTTATTTTGTGGTGCTGAGAA-TTGAACATAGTGTTTCATGCATGC  49
      ||||||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  TGTGTTTATTTTGTGATGCTGAGAATTTGAACATAGTGTTTCATGCATGC  50

seq1  TAGGCATGT-GCTCTACCATTGGAGAACGTTATCTTATAGTGCAGTAAAT  98
      || |||||| |||||| ||||||||| |||||||||||||||||||||||
seq2  TA-GCATGTGGCTCTA-CATTGGAGACCGTTATCTTATAGTGCAGTAAAT  98

seq1  GATGAGGTAATAAAGGATTATAATCATATGGGGATAAGTTTCAAATCCAA  148
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATGA-GTAAT-AAGGATTATAATCATATGGGGATAAGTTTCAAATCCAA  146

seq1  GAAAGGTTATCTCAGTGGTATATAAAGTGTGCTCTAGGAGAACGACGCAA  198
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTATCTCAGTGGTATATAAAGTGTGCTCTAGGAGAACGACGCAA  196

seq1  AGGACCTTGTAATTTCCTGTTTAACCAGAGCATATTGGTTGGTGAATTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTTGTAATTTCCTGTTTAACCAGAGCATATTGGTTGGTGAATTTT  246

seq1  ATAGAGAAAATTGGAGGAATTATGATGCTTTCTTATTAATTTTCAAATAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAAAATTGGAGGAATTATGATGCTTTCTTATTAATTTTCAAATAG  296

seq1  ACTACCTGAGGATTTAATCAGAACCAGAGTAGTTTTGATAGCTCAGTGTA  348
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTA-CTGAGGATTTAATCAGAACCAGAGTAGTTTTGATAGCTCAGTGTA  345

seq1  CAATTGAATTTTCAGTGGCTGGCCTTTGGCAGGTGATTAATAAATGTGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGAATTTTCAGTGGCTGGCCTTTGGCAGGTGATTAATAAATGTGAG  395

seq1  GTCACCACACTGTTTTCTCTCCAGCCCTATTTCAGTGTTTGTTTCCTTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCACACTGTTTTCTCTCCAGCCCTATTTCAGTGTTTGTTTCCTTCT  445

seq1  CCCACCTTGTGTTGTGCTAGACCACAGAATGGCTTATTACCTCCATTCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTTGTGTTGTGCTAGACCACAGAATGGCTTATTACCTCCATTCCA  495

seq1  CTGTCCTTTTAAACCAAAGAGAACAGTGGTCCTTCCCAAGGTTTGACTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTTTTAAACCAAAGAGAACAGTGGTCCTTCCCAAGGTTTGACTGA  545

seq1  CAAACTGTTGTATTGAAAGTACCCCTGAGGAGGGACCCAGAAGGGAAAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGTTGTATTGAAAGTACCCCTGAGGAGGGACCCAGAAGGGAAAGG  595

seq1  AGCAGTGTGTTGGAGATTGATCAGCTCTAATAGGTAGATGTAGAAGGGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGTGTTGGAGATTGATCAGCTCTAATAGGTAGATGTAGAAGGGAG  645

seq1  TCAAGGTTTTACTGAGTGTGTAAATCTATTTTTCTTTCCCACTAAATTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTTTTACTGAGTGTGTAAATCTATTTTTCTTTCCCACTAAATTCC  695

seq1  CTTTAAGTTGTTTTCTCTTAAACTTATTTTTAAGTTGAGCCAGTGAAACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGTTGTTTTCTCTTAAACTTATTTTTAAGTTGAGCCAGTGAAACT  745

seq1  TTTGTTATTAGGAGTAGGCTATGGCTGAGTATGGTGGCCTCCTTCTGTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATTAGGAGTAGGCTATGGCTGAGTATGGTGGCCTCCTTCTGTAA  795

seq1  TTCTAGCACTTAGGGGGCTGATACAGGAGGATCATGAGTTTGAGGCTATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCACTTAGGGGGCTGATACAGGAGGATCATGAGTTTGAGGCTATC  845

seq1  CTGTGCCACAGTAGTATAACTTTGTCATTGTCCTCCTGTCCCAGCCAGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCACAGTAGTATAACTTTGTCATTGTCCTCCTGTCCCAGCCAGCT  895

seq1  TGGTGGCTCATGCCTGTAATCCCAGTACTTAGTAGGCTGAGGTAGAAGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTCATGCCTGTAATCCCAGTACTTAGTAGGCTGAGGTAGAAGGA  945

seq1  CTTTGTGGTGTTTGAACCCAGCCTGGGTAACATAGTATCAGGACAGAATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGGTGTTTGAACCCAGCCTGGGTAACATAGTATCAGGACAGAATG  995

seq1  AGACTCTGTCTCAGAAAACAGCAACAACAAACAAAACCTCAACCAAACAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTGTCTCAGAAAACAGCAACAACAAACAAAACCTCAACCAAACAG  1045

seq1  AAACAAACAGGCAGTGATAAATCAGACATTGCACTCAGATTTGAATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAGGCAGTGATAAATCAGACATTGCACTCAGATTTGAATTC  1093

seq1: chr3_95762955_95763886
seq2: B6Ng01-196L22.g_66_1001

seq1  GAATTCTAATTGAGAATGGTGTAGGTTTTTGAAACCTAAAAGTCCTCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATTGAGAATGGTGTAGGTTTTTGAAACCTAAAAGTCCTCTCC  50

seq1  CTCTGTGACACACATCTTCCAAGAAGGCCCCATGTCCTCATCCTTCCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGACACACATCTTCCAAGAAGGCCCCATGTCCTCATCCTTCCTAA  100

seq1  ACAGTTCTATCAACTGGGGACCAAGCATCAAATAGATGAGCCGCTGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCTATCAACTGGGGACCAAGCATCAAATAGATGAGCCGCTGGGCA  150

seq1  ATTGTATTGCAAGCCATCACAGTGCTCCAAAGTGCCGACAAACAAGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATTGCAAGCCATCACAGTGCTCCAAAGTGCCGACAAACAAGATTT  200

seq1  TAAGTTCCATAACTAAGAACCATCTGTAACTCCAGCCTGAGTAGTTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCCATAACTAAGAACCATCTGTAACTCCAGCCTGAGTAGTTCTGA  250

seq1  TGCCCTCTTCTGGCTTCTACAGGTACTGCACACATTTGATACATAGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCTTCTGGCTTCTACAGGTACTGCACACATTTGATACATAGCCAT  300

seq1  ACATTTAGGCAAACTATTCATATCCATTCGTCTTAGAGTTACTATTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAGGCAAACTATTCATATCCATTCGTCTTAGAGTTACTATTGCTG  350

seq1  TGGTGAAACGCCACGTCCAAGAGCACCTTTGGGGAGGAAAGGGTTTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAACGCCACGTCCAAGAGCACCTTTGGGGAGGAAAGGGTTTGTTT  400

seq1  GGCTTATGTATCCCAAGTTACAGTCCACTAAGGGAAGCCAAGGCAGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTATGTATCCCAAGTTACAGTCCACTAAGGGAAGCCAAGGCAGGAAC  450

seq1  TCAAACAGGGCAGGAACCTGGAGGCAGGAGCTGATGCAGAAGCCATGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAGGGCAGGAACCTGGAGGCAGGAGCTGATGCAGAAGCCATGGAG  500

seq1  GGCTGCTGCTTACTGGCTTGCTCCTCATGGCTTGCTCAGCCTGCTTTCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGCTTACTGGCTTGCTCCTCATGGCTTGCTCAGCCTGCTTTCGT  550

seq1  ATAGAACCAGATATAGCATTGCCCACAGTGAGCTGGTCTCTCCCACAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACCAGATATAGCATTGCCCACAGTGAGCTGGTCTCTCCCACAACA  600

seq1  ATTGCTAATTAAGAAATGCCAGTCAAGCTTGCCTACAGGCCAATCTATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAATTAAGAAATGCCAGTCAAGCTTGCCTACAGGCCAATCTATTG  650

seq1  GAGGTCTTTTCTCAGTTGAGG-TTCCCTCTTCCCAGATGACTCTAGCTTG  699
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAGGTCTTTTCTCAGTTGAGGTTTCCCTCTTCCCAGATGACTCTAGCTTG  700

seq1  TGTCAAGTTGACCAAAAAC-AAAACAAAACAAAACAAAAACAAAAACAAA  748
      ||||||||||||||||||| |||||||||| |||||||||||||| ||||
seq2  TGTCAAGTTGACCAAAAACAAAAACAAAAC-AAACAAAAACAAAATCAAA  749

seq1  CAAAACACAAAACAAAACAAACAAAACCCCAAAACAAGCAAAAACTTACT  798
      ||||| ||| ||  ||||||||||||||||||||||||||||||||||||
seq2  CAAAA-ACACAAACAAACAAACAAAACCCCAAAACAAGCAAAAACTTACT  798

seq1  AAATTTCTATCATAGCTTGGTGTTGATCTTAAAAGCATAAGTTAAAGAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTATCATAGCTTGGTGTTGATCTTAAAAGCATAAGTTAAAGAAA  848

seq1  TGGACTTCAAATTCATCCTGCTGGACTAACAAAACAACTGGAAGGAAGCT  898
      |||||||  ||||||||||||||||||||||||||||||||||||||  |
seq2  TGGACTTTCAATTCATCCTGCTGGACTAACAAAACAACTGGAAGGAACTT  898

seq1  TATT-ACTGG-AATAGCCTT-CCTAAGA-GGATCATAT  932
      |||| ||||| ||||||||| ||||||| |||||||||
seq2  TATTAACTGGAAATAGCCTTCCCTAAGAGGGATCATAT  936