BAC Information

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BAC

Clone NameB6Ng01-196M04
Chromosome3 (Build37)
Map Location 106,098,531 - 106,294,689
singlet/doubletdoublet
Overlap geneEG624696, BC051070, 2010016I18Rik, Dennd2d
Upstream gene1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4
Downstream geneCept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196M04.bB6Ng01-196M04.g
ACCGA018813GA018814
length1,200997
definitionB6Ng01-196M04.b B6Ng01-196M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,098,531 - 106,099,284)(106,293,695 - 106,294,689)
sequence
gaattcaaagaagatctcagaatatggaaaaaactcccaacttcacgggt
tgggaggattaatatagtaaaaattgtcatcctgccaaaagcaatgaaca
gattcaatgcaatccccataaaatttcccactcaactgttcatagagttt
gaaagagtaaattgcaaattcatttggaataaccaaaatccctggatagt
gaaaactattctcatcaataaaagaacttctggggaaatcactatcactg
acctcaagctcaatagtgattaaaaactgcatggtattggtacaaagaca
ggcaagtaaataaatggaacaatattgaagatccagatataaacccccac
acatattatcacttgatcttttttttttttccattcagtggataaaagac
agcattttcaactaatggtgctgattcaacagtagacaagcatgtagaag
tatgcaaatcaattcatttttatatccttgtacaaagctcaagtccaact
gattcaagaacctctaaataaaaccaggtacactgatacgaatacaagag
aaagtggaggaagggcctcgaacacatgggcacagggggaaatttcctga
gaacatcactgatggcttatgctgtaagataagcaattgacaaataggac
ctcataaaattgtaaaaattctgtcaggtaaaggaggctgtcaataggac
aaaatagcaaccaacagattgggaaaagattttttccaatcttacatctg
atattgggctaatatccaatacatacaaagaagtcaagaagttagaatcc
agagaaccaaacaactcctttaaaatggtgtataaaactaaacaaagaat
tctcaactgaataatatcaatgacggagaagcacctaaacaaatgttcaa
catcttttagtcatcagagagatgtttccattagccacatatgggtgaag
aaatcagcattttctccatttttctttccttattttagcagcagtaaatt
cctccattaaacccttctttgtatcatattctttgaaccttggactatga
gggattgttaggtagaaatggccaatgtctatagcctgagaaaagacttt
actagaattctgtacttaccaatatgagtgtatgaaatttaggaactttt
tatttaaagggaagccagatatttctggttaaaaaaactctctgagagca

gaattctacttgctgccttgagctctttagtgacttagaccaacagtact
tcatgacatgggtgtgaacttaggggtagggataaatgataagaagtaaa
acggaaactacgggagagcgatacaggacactcacagagaatagttaagt
tagttacagtgtaggagcaactggacatttggagactaggaacaaactta
gcaccatacatgagcacagacaaaaatttagcagactgcaaagtaagtag
ttgctggtgggcatcaggtacagtacatttaggtgatttttttttttagc
tctgccaataattctaatgcctggctcagcttccctatacttgaacctga
tgagtcaaggcgagaggaaccagccaggaagaggactgcacatttattaa
cccacctctgtgcctgagtcaggaatgaagctcttaagggtgactgtctt
tccaggtgcaggaaaggctgcctctcggagaccttgcatgaatgggtaga
tgacagccatggagatctgatgcctcttctctacttcatctagtatctgc
aggggaaggaccacaggaaggaaggcttagagggattctactgagtactc
aggactctcacgctagtcctgtcagttctctagtattttctaggcccctc
tataactggctttcatctcctggacaaaccctacttttcaaagacttctt
ttgatttttctctcatattcctttctctcctaacaccgacatgaaactac
taagcctagcaagtcatttcccatgttggcctaactttttgggtatcact
gtcccattttcctctggactgtcatcagggtgaggctaccatcaggcctt
cagtgtaattcacaagaaagtagatccacccaagccgaagccactggagt
tcctcttctcacacccagcatttcttctgttcaccaagataggtcagtca
tttcggagactacttgatcatagcccagccaatactaatcatcagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_106098531_106099284
seq2: B6Ng01-196M04.b_470_1244

seq1  TCAACAGTAGACAAGCATGTAGAAGTATGCAAATCAATTCATTTTTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGTAGACAAGCATGTAGAAGTATGCAAATCAATTCATTTTTATAT  50

seq1  CCTTGTACAAAGCTCAAGTCCAACTGATTCAAGAACCTCTAAATAAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACAAAGCTCAAGTCCAACTGATTCAAGAACCTCTAAATAAAACC  100

seq1  AGGTACACTGATACGAATACAAGAGAAAGTGGAGGAAGGGCCTCGAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACACTGATACGAATACAAGAGAAAGTGGAGGAAGGGCCTCGAACAC  150

seq1  ATGGGCACAGGGGGAAATTTCCTGAGAACATCACTGATGGCTTATGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCACAGGGGGAAATTTCCTGAGAACATCACTGATGGCTTATGCTGT  200

seq1  AAGATAAGCAATTGACAAATAGGACCTCATAAAATTGTAAAAATTCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAGCAATTGACAAATAGGACCTCATAAAATTGTAAAAATTCTGTC  250

seq1  AGGTAAAGGAGGCTGTCAATAGGACAAAATAGCAACCAACAGATTGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAGGAGGCTGTCAATAGGACAAAATAGCAACCAACAGATTGGGAA  300

seq1  AAGATTTTTTCCAATCTTACATCTGATATTGGGCTAATATCCAATACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTTTCCAATCTTACATCTGATATTGGGCTAATATCCAATACATA  350

seq1  CAAAGAAGTCAAGAAGTTAGAATCCAGAGAACCAAACAACTCCTTTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGTCAAGAAGTTAGAATCCAGAGAACCAAACAACTCCTTTAAAA  400

seq1  TGGTGTATAAAACTAAACAAAGAATTCTCAACTGAATAATATCAAATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGGTGTATAAAACTAAACAAAGAATTCTCAACTGAATAATATC-AATGAC  449

seq1  GGAGAAGCACCTAAACAAATGTTCAACATC-TTTAGTCATCAGAGAGATG  499
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGAGAAGCACCTAAACAAATGTTCAACATCTTTTAGTCATCAGAGAGATG  499

seq1  TTTCCATTAGCCACATAT-GGTGAAGAAATCAGCA-TTTCTCCA-TTTTC  546
      |||||||||||||||||| |||||||||||||||| |||||||| |||||
seq2  TTTCCATTAGCCACATATGGGTGAAGAAATCAGCATTTTCTCCATTTTTC  549

seq1  TTTCCTTATTTTAGCAGCAGTAAATT-CTCCATT-AACCCT--CTTGTAT  592
      |||||||||||||||||||||||||| ||||||| ||||||   ||||||
seq2  TTTCCTTATTTTAGCAGCAGTAAATTCCTCCATTAAACCCTTCTTTGTAT  599

seq1  CATATTCTTTGAACCTT-GACTATGAGGGA-TGTTA-GTAGAAATG--CC  637
      ||||||||||||||||| |||||||||||| ||||| |||||||||  | 
seq2  CATATTCTTTGAACCTTGGACTATGAGGGATTGTTAGGTAGAAATGGCCA  649

seq1  ATGTCTATAG-CTGAG--AAGACTTACTTAAGATTCTGTACTTTAACCAA  684
      |||||||||| |||||  |||||||   ||  |||||||||||  |||||
seq2  ATGTCTATAGCCTGAGAAAAGACTTTACTAGAATTCTGTACTT--ACCAA  697

seq1  TAATGAGTGTATGAA--TTAAGAAC-TTTTATTTAAAAGGA--GCAGATA  729
      | |||||||||||||  ||| |||| ||||||||||| |||   ||||||
seq2  T-ATGAGTGTATGAAATTTAGGAACTTTTTATTTAAAGGGAAGCCAGATA  746

seq1  -TTCTGGGAAAAAAAACTCT---AGAGCA  754
       ||||||  |||||||||||   ||||||
seq2  TTTCTGGTTAAAAAAACTCTCTGAGAGCA  775

seq1: chr3_106293695_106294689
seq2: B6Ng01-196M04.g_66_1062 (reverse)

seq1  AACTGATGATTAGTATTGCTGGGGCTATGATCAAGGTAGTCTCCCAAAAT  50
      ||||||||||||||||||   ||||||||||||| ||||||| || ||||
seq2  AACTGATGATTAGTATTGGCTGGGCTATGATCAA-GTAGTCT-CCGAAAT  48

seq1  GAACTTGACCTATCTTGGTGACCAGAAG-AATGCTGGGTGT--GGAGAGG  97
      ||   |||||||||||||||| |||||| ||||||||||||  | |||||
seq2  GA--CTGACCTATCTTGGTGAACAGAAGAAATGCTGGGTGTGAGAAGAGG  96

seq1  AACTCCAGTGGCTTCGGCTTGGGTGGATCTTACTTC-TGTGAATTACACT  146
      ||||||||||||||||||||||||||||||   ||| |||||||||||||
seq2  AACTCCAGTGGCTTCGGCTTGGGTGGATCTACTTTCTTGTGAATTACACT  146

seq1  G-AGGGCTGATGGTAGCCTCACCCTGATGACAGTCCAGAGG-AAATGGGA  194
      | ||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAAGGCCTGATGGTAGCCTCACCCTGATGACAGTCCAGAGGAAAATGGGA  196

seq1  CAGTGATACCCAAAAAGTTAGGCCAACATGGGAAATGACTTGCTAGGCTT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATACCCAAAAAGTTAGGCCAACATGGGAAATGACTTGCTAGGCTT  246

seq1  AGTAGTTTCATGTCGGTGTTAGGAGAGAAAGGAATATGAGAGAAAAATCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTTCATGTCGGTGTTAGGAGAGAAAGGAATATGAGAGAAAAATCA  296

seq1  AAAGAAGTCTTTGAAAAGTAGGTTTTGTCCAGGAGATGAAAGCCAGTTAT  344
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAGAAGTCTTTGAAAAGTAGGGTTTGTCCAGGAGATGAAAGCCAGTTAT  346

seq1  AGAGGGGCCTAGAAAATACTAGAGAACTGACAGGACTAGCGTGAGAGTCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGCCTAGAAAATACTAGAGAACTGACAGGACTAGCGTGAGAGTCC  396

seq1  TGAGTACTCAGTAGAATCCCTCTAAGCCTTCCTTCCTGTGGTCCTTCCCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACTCAGTAGAATCCCTCTAAGCCTTCCTTCCTGTGGTCCTTCCCC  446

seq1  TGCAGATACTAGATGAAGTAGAGAAGAGGCATCAGATCTCCATGGCTGTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATACTAGATGAAGTAGAGAAGAGGCATCAGATCTCCATGGCTGTC  496

seq1  ATCTACCCATTCATGCAAGGTCTCCGAGAGGCAGCCTTTCCTGCACCTGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCCATTCATGCAAGGTCTCCGAGAGGCAGCCTTTCCTGCACCTGG  546

seq1  AAAGACAGTCACCCTTAAGAGCTTCATTCCTGACTCAGGCACAGAGGTGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGTCACCCTTAAGAGCTTCATTCCTGACTCAGGCACAGAGGTGG  596

seq1  GTTAATAAATGTGCAGTCCTCTTCCTGGCTGGTTCCTCTCGCCTTGACTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAAATGTGCAGTCCTCTTCCTGGCTGGTTCCTCTCGCCTTGACTC  646

seq1  ATCAGGTTCAAGTATAGGGAAGCTGAGCCAGGCATTAGAATTATTGGCAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGTTCAAGTATAGGGAAGCTGAGCCAGGCATTAGAATTATTGGCAG  696

seq1  AGCTAAAAAAAAAAATCACCTAAATGTACTGTACCTGATGCCCACCAGCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAAAAAAAAATCACCTAAATGTACTGTACCTGATGCCCACCAGCA  746

seq1  ACTACTTACTTTGCAGTCTGCTAAATTTTTGTCTGTGCTCATGTATGGTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTACTTTGCAGTCTGCTAAATTTTTGTCTGTGCTCATGTATGGTG  796

seq1  CTAAGTTTGTTCCTAGTCTCCAAATGTCCAGTTGCTCCTACACTGTAACT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTTGTTCCTAGTCTCCAAATGTCCAGTTGCTCCTACACTGTAACT  846

seq1  AACTTAACTATTCTCTGTGAGTGTCCTGTATCGCTCTCCCGTAGTTTCCG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAACTATTCTCTGTGAGTGTCCTGTATCGCTCTCCCGTAGTTTCCG  896

seq1  TTTTACTTCTTATCATTTATCCCTACCCCTAAGTTCACACCCATGTCATG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTCTTATCATTTATCCCTACCCCTAAGTTCACACCCATGTCATG  946

seq1  AAGTACTGTTGGTCTAAGTCACTAAAGAGCTCAAGGCAGCAAGTAGAATT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTGTTGGTCTAAGTCACTAAAGAGCTCAAGGCAGCAAGTAGAATT  996

seq1  C  995
      |
seq2  C  997