BAC Information

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BAC

Clone NameB6Ng01-197A23
Chromosome3 (Build37)
Map Location 73,388,665 - 73,543,575
singlet/doubletdoublet
Overlap geneBche
Upstream gene2010204N08Rik, Slitrk3
Downstream geneLOC667425, LOC619764, LOC667434, LOC100041551
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197A23.bB6Ng01-197A23.g
ACCGA019031GA019032
length1,1911,082
definitionB6Ng01-197A23.b B6Ng01-197A23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,542,377 - 73,543,575)(73,388,665 - 73,389,746)
sequence
gaattctgtgaagaaaaagttcaacatcctattaaagagataactattcc
ccctatctctagtcaagaataaaggagcgctgactttcttaggcatagta
tcttagacaagagtttgaccacattccactataatgttaggattccagct
agacaagagattccttgtcttgatcaagaggagttgtctttatttattat
tttcctcctccaaaacaacctctggctgtgcatggagacttgatagctcc
agttacctgaatagaaatgagaagaattggatctgcctaatgagataatc
tacttttctttcccagaggtctcttctcaaggtagatgctccaagctgct
tctataaggctgcactctaaagcctttggctggagctggggagcgtgtct
gcttttctgagttaggaaaggaaacaaaggaagcttacacataatccctt
atatatttagctgaatgaaagggcctcaaggccttgactattcctggagg
tgaaaccgagagcacttgagagaagcaatataatacatgttgctttaatc
agtaaatatgataggactttaaagggaaggaggaacttcccttcgtacag
cagagagaagtttcatgaagaatgaggaggacactcattagagtcagaga
atgatgagggaggaccgtgaaaacatactgcagggttaactgtgggagcc
ggacattgtaggagaaggccagaggaacctgcttggacagaacataggag
atgaatgtgcagtaagagtgccccttatccccaaaacagagcacacgtct
gaaatttatacccttttaagagggatgggaagtttcacataaaaagattt
agctcattttgatttgtgtgtctctgatcatgaagtagctaggttccata
aattgaaagctgtcaaatcaccgcatagagtgcttcttagctctctgtcc
tagatacaaatgcatgcaaacatgaactgattcaggatactgggttctgg
gcctagagatgcaagtctacctatatttaacaggccccaatactggaagg
cccaaagtagcttaggagacagtataaaggttcctttacagctcaccaat
aaagcaaagtcttgctttcaaggtcgaatctaaaagtaaacttatccgta
atgggcaatgagaaaaactggaatgtaaacttaaacctgtt
gaattctgtcacaacagctcagacaggaaaccctggccacttgttgcaca
gagaagaatgtagaggaaaatagtgagaatcctatagagattgcaacagg
atgagatttctcgactgctgatgggtatacactgtaggagaaatgagcgt
caagaatggattctcaccgggcgtggtggcacatgcctttaatcccagca
ctcgggaggcagaggcaggcagatttctgagttcgaggccagcctggtct
acaaagtgagtttcaggacagccagggctacacagagaaaccttgtctcg
aaaaaccaaattaaaaaaaaaacaaaacaaaacaaaagaatggattacca
tattctgtttaaaaagtacaataactctatgttaatattcttcacaactt
acaaataatcattagccaggagagaatagaattttattttgggatgtata
aagttaaacctctttattatagacagtttttgtgtgtcccctgcattgaa
ctttgctgagtcagaataaaatttgtaatgccaaagaataaagtaagtga
catgttcatttttctatcatcaacaaatgtaacttaaagaagaaagaggg
gttttttttttttttggcttataatttgaagctaacgcacactgtggttg
tgaaatgcacgtccacctcaaatctatggtcaagaaacagagagaaatga
gtgaggtttctctactcgcgtccttcttcttatgtgtttatttagtataa
gagacagcccattggatgacattactcacattaggagttggagcaatttg
acgctggacacattaaatgtacttatttaagagggggtgtgtcctgagct
acatctctctggaactatgaccacaaaatatgcacagagctgtgtgtcct
agtgattctaaatgacaaccagtggatgatgaagagtatcacattatgga
taagtttcagagtggtatgatatatcacctaaggtttgaccatagcctta
aactgctcaatattgaaaaaatgagaatatagaaattctccacatatgtt
attttattgtattgctaggtattatttacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_73542377_73543575
seq2: B6Ng01-197A23.b_46_1236 (reverse)

seq1  AACAGGTTT-AGTTTACATTTTAAATGTTTTTCTCAATTTCTCCAATAAT  49
      ||||||||| ||||||||||  |   ||||||||||  ||  ||| ||  
seq2  AACAGGTTTAAGTTTACATTCCA---GTTTTTCTCA--TTGCCCATTACG  45

seq1  GAATTTAAATTTTCTTTTTTTGTTTTCTGACACTTG-TAGC-AGACTTTC  97
      ||   ||| ||| |  |||| | ||   ||| ||||  ||| ||||||| 
seq2  GA---TAAGTTTAC--TTTTAGATT--CGAC-CTTGAAAGCAAGACTTTG  87

seq1  CTTTTATTGGTTGAGCTGTAAGGGAAC--TTATACTGTCTCCTAGGCTAC  145
      | |||||||| |||||||||| |||||  ||||||||||||||| |||||
seq2  C-TTTATTGG-TGAGCTGTAAAGGAACCTTTATACTGTCTCCTAAGCTAC  135

seq1  TTT-GGCCTTCCAAGTATTGGGGCTGTTTAAATATAGGTGGACTTGCATC  194
      ||| |||||||| |||||||||||   |||||||||||| ||||||||||
seq2  TTTGGGCCTTCC-AGTATTGGGGCCTGTTAAATATAGGTAGACTTGCATC  184

seq1  TCTAGG-CCAGAA-CCAGTATCCTGAATCAGTTCATGTTTGCATGCATTT  242
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCCCAGAACCCAGTATCCTGAATCAGTTCATGTTTGCATGCATTT  234

seq1  GTATCTAGGACAGAGAGCTAAGAAGCACTCTATGCGGTGATTTGACAGCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTAGGACAGAGAGCTAAGAAGCACTCTATGCGGTGATTTGACAGCT  284

seq1  TTCAATTTATGGAACCTAGCTACTTCATGATCAGAGACACACAAATCAAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTATGGAACCTAGCTACTTCATGATCAGAGACACACAAATCAAA  334

seq1  ATGAGCTAAATCTTTTTATGTGAAACTTCCCATCCCTCTTAAAAGGGTAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTAAATCTTTTTATGTGAAACTTCCCATCCCTCTTAAAAGGGTAT  384

seq1  AAATTTCAGACGTGTGCTCTGTTTTGGGGATAAGGGGCACTCTTACTGCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCAGACGTGTGCTCTGTTTTGGGGATAAGGGGCACTCTTACTGCA  434

seq1  CATTCATCTCCTATGTTCTGTCCAAGCAGGTTCCTCTGGCCTTCTCCTAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATCTCCTATGTTCTGTCCAAGCAGGTTCCTCTGGCCTTCTCCTAC  484

seq1  AATGTCCGGCTCCCACAGTTAACCCTGCAGTATGTTTTCACGGTCCTCCC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCGGCTCCCACAGTTAACCCTGCAGTATGTTTTCACGGTCCTCCC  534

seq1  TCATCATTCTCTGACTCTAATGAGTGTCCTCCTCATTCTTCATGAAACTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTCTCTGACTCTAATGAGTGTCCTCCTCATTCTTCATGAAACTT  584

seq1  CTCTCTGCTGTACGAAGGGAAGTTCCTCCTTCCCTTTAAAGTCCTATCAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGCTGTACGAAGGGAAGTTCCTCCTTCCCTTTAAAGTCCTATCAT  634

seq1  ATTTACTGATTAAAGCAACATGTATTATATTGCTTCTCTCAAGTGCTCTC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTGATTAAAGCAACATGTATTATATTGCTTCTCTCAAGTGCTCTC  684

seq1  GGTTTCACCTCCAGGAATAGTCAAGGCCTTGAGGCCCTTTCATTCAGCTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCACCTCCAGGAATAGTCAAGGCCTTGAGGCCCTTTCATTCAGCTA  734

seq1  AATATATAAGGGATTATGTGTAAGCTTCCTTTGTTTCCTTTCCTAACTCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAAGGGATTATGTGTAAGCTTCCTTTGTTTCCTTTCCTAACTCA  784

seq1  GAAAAGCAGACACGCTCCCCAGCTCCAGCCAAAGGCTTTAGAGTGCAGCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCAGACACGCTCCCCAGCTCCAGCCAAAGGCTTTAGAGTGCAGCC  834

seq1  TTATAGAAGCAGCTTGGAGCATCTACCTTGAGAAGAGACCTCTGGGAAAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAAGCAGCTTGGAGCATCTACCTTGAGAAGAGACCTCTGGGAAAG  884

seq1  AAAAGTAGATTATCTCATTAGGCAGATCCAATTCTTCTCATTTCTATTCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGATTATCTCATTAGGCAGATCCAATTCTTCTCATTTCTATTCA  934

seq1  GGTAACTGGAGCTATCAAGTCTCCATGCACAGCCAGAGGTTGTTTTGGAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTGGAGCTATCAAGTCTCCATGCACAGCCAGAGGTTGTTTTGGAG  984

seq1  GAGGAAAATAATAAATAAAGACAACTCCTCTTGATCAAGACAAGGAATCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAATAATAAATAAAGACAACTCCTCTTGATCAAGACAAGGAATCT  1034

seq1  CTTGTCTAGCTGGAATCCTAACATTATAGTGGAATGTGGTCAAACTCTTG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTAGCTGGAATCCTAACATTATAGTGGAATGTGGTCAAACTCTTG  1084

seq1  TCTAAGATACTATGCCTAAGAAAGTCAGCGCTCCTTTATTCTTGACTAGA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGATACTATGCCTAAGAAAGTCAGCGCTCCTTTATTCTTGACTAGA  1134

seq1  GATAGGGGGAATAGTTATCTCTTTAATAGGATGTTGAACTTTTTCTTCAC  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGGGAATAGTTATCTCTTTAATAGGATGTTGAACTTTTTCTTCAC  1184

seq1  AGAATTC  1199
      |||||||
seq2  AGAATTC  1191

seq1: chr3_73388665_73389746
seq2: B6Ng01-197A23.g_63_1144

seq1  GAATTCTGTCACAACAGCTCAGACAGGAAACCCTGGCCACTTGTTGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCACAACAGCTCAGACAGGAAACCCTGGCCACTTGTTGCACA  50

seq1  GAGAAGAATGTAGAGGAAAATAGTGAGAATCCTATAGAGATTGCAACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAATGTAGAGGAAAATAGTGAGAATCCTATAGAGATTGCAACAGG  100

seq1  ATGAGATTTCTCGACTGCTGATGGGTATACACTGTAGGAGAAATGAGCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATTTCTCGACTGCTGATGGGTATACACTGTAGGAGAAATGAGCGT  150

seq1  CAAGAATGGATTCTCACCGGGCGTGGTGGCACATGCCTTTAATCCCAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGGATTCTCACCGGGCGTGGTGGCACATGCCTTTAATCCCAGCA  200

seq1  CTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCT  250

seq1  ACAAAGTGAGTTTCAGGACAGCCAGGGCTACACAGAGAAACCTTGTCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGAGTTTCAGGACAGCCAGGGCTACACAGAGAAACCTTGTCTCG  300

seq1  AAAAACCAAATTAAAAAAAAAACAAAACAAAACAAAAGAATGGATTACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAAATTAAAAAAAAAACAAAACAAAACAAAAGAATGGATTACCA  350

seq1  TATTCTGTTTAAAAAGTACAATAACTCTATGTTAATATTCTTCACAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGTTTAAAAAGTACAATAACTCTATGTTAATATTCTTCACAACTT  400

seq1  ACAAATAATCATTAGCCAGGAGAGAATAGAATTTTATTTTGGGATGTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAATCATTAGCCAGGAGAGAATAGAATTTTATTTTGGGATGTATA  450

seq1  AAGTTAAACCTCTTTATTATAGACAGTTTTTGTGTGTCCCCTGCATTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAACCTCTTTATTATAGACAGTTTTTGTGTGTCCCCTGCATTGAA  500

seq1  CTTTGCTGAGTCAGAATAAAATTTGTAATGCCAAAGAATAAAGTAAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGAGTCAGAATAAAATTTGTAATGCCAAAGAATAAAGTAAGTGA  550

seq1  CATGTTCATTTTTCTATCATCAACAAATGTAACTTAAAGAAGAAAGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCATTTTTCTATCATCAACAAATGTAACTTAAAGAAGAAAGAGGG  600

seq1  GTTTTTTTTTTTTTTGGCTTATAATTTGAAGCTAACGCACACTGTGGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTTTTGGCTTATAATTTGAAGCTAACGCACACTGTGGTTG  650

seq1  TGAAATGCACGTCCACCTCAAATCTATGGTCAAGAAACAGAGAGAAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGCACGTCCACCTCAAATCTATGGTCAAGAAACAGAGAGAAATGA  700

seq1  GTGAGGTTTCTCTACTCGCGTCCTTCTTCTTATGTGTTTATTTAGTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTTTCTCTACTCGCGTCCTTCTTCTTATGTGTTTATTTAGTATAA  750

seq1  GAGACAGCCCATTGGATGACATTACTCACATTAGGAGTTGGAGCAATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGCCCATTGGATGACATTACTCACATTAGGAGTTGGAGCAATTTG  800

seq1  ACGCTGGACACATTAAATGTACTTATTTAAGAGGGGGTGTGTCCTGAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGGACACATTAAATGTACTTATTTAAGAGGGGGTGTGTCCTGAGCT  850

seq1  ACATCTCTCTGGAACTATGACCAC-AAATATGCACAGAGCTGTGTGTCCT  899
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACATCTCTCTGGAACTATGACCACAAAATATGCACAGAGCTGTGTGTCCT  900

seq1  AGGTGATTCTAAATGACAACCAGTGGATGATGAAGAGTATCACATTATGG  949
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GTGATTCTAAATGACAACCAGTGGATGATGAAGAGTATCACATTATGG  949

seq1  ATAAGTTTCAGAGTGGTATGATATATCA-CTAA-GTTTGACATTAGCTTT  997
      |||||||||||||||||||||||||||| |||| |||||||  |||| ||
seq2  ATAAGTTTCAGAGTGGTATGATATATCACCTAAGGTTTGACCATAGCCTT  999

seq1  AAATTGCTCAATATTTGAAAAATGAGAATATAGAAAATTCTCCACATATG  1047
      ||| |||||||||||  |||||||||||||||| ||||||||||||||||
seq2  AAACTGCTCAATATTGAAAAAATGAGAATATAG-AAATTCTCCACATATG  1048

seq1  TTATTTTATTGTATATGCTATGTATATATTACACA  1082
      |||||||||||||| ||||| ||||   |||||||
seq2  TTATTTTATTGTAT-TGCTAGGTATTATTTACACA  1082