BAC Information

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BAC

Clone NameB6Ng01-197A24
Chromosome3 (Build37)
Map Location 159,258,964 - 159,409,600
singlet/doubletdoublet
Overlap geneRpe65
Upstream geneLOC100041008, LOC668905, LOC668907, Depdc1a
Downstream geneGpr177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197A24.bB6Ng01-197A24.g
ACCGA019033GA019034
length1031,137
definitionB6Ng01-197A24.b B6Ng01-197A24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,258,964 - 159,259,066)(159,408,478 - 159,409,600)
sequence
aatgtagtaacctcagaaattcagccttggaggcatggctgaatgtttta
ttgttctccagggtttcatgtgagtaagtgtgtgtgtgtgtgtgtgtgtg
tgt

gaattcagctaaataatagttgaaacatgaatggacaggaaaacactctt
gtccctaataatactactagcagacaggcaagtttttctgcatgtgggaa
tgagatactcttatgataagaataactattgtatattaataagcatttac
ttatggagctaatgttatatagctgatgttttaaaaggagctttttctat
gaaaaatttccaagataaaggaaaattaaacctgatagttacccaacctt
gcatggaagtgtgtcagttgcttttcctttgtgaaacagcaagtgtttgg
tctgatccattctgactagaaagaatggaaggagactctagtgtgtctga
tgttccagacaagataacagatactttaaaagaaagagaaatctttgaag
taggaatttcattgtccctactcagtctactgaagaacttttgctaaact
gaggcatgtgtaccctaggacttcttttgtggctcctcccaatcactgca
ggttatttacctccttttcattcaaaaagaaaaaagaacaggaggttaga
aatacacacacacacacacacacacacacacacacacacacacacacaca
cacacacacagagagagagagagagagagagagagagagagagagagaga
gagagagagagagaggcttgtttctcttaaagtttatttgcttcaagatt
gctgtattgaaggacaatttttaaatatgtcagaggtgcagtgaagtccc
tatttaaacttttattcatttttaccctttttgtcagtctgcttgattgc
aatatctcttcattcttctcaccaaatacttgaatgtgtaggccagattt
tctaagactgacctcatttcatgtattgcaactgttgccagtttagagaa
atgattacataggaatataatgcattttgatctttttatcctgtgacact
tattatgtaaataaattcacaaaccacagaaaaaattatgccatccaatt
ttacccttcaagaaatggtgaacctctcactcaatctttaactcttcatt
atggtcacatgatttggttggcaagacaaactgatataccaaatatatta
aaactatactcaggaactctcgggagatgttttaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_159258964_159259066
seq2: B6Ng01-197A24.b_52_154

seq1  AATGTAGTAACCTCAGAAATTCAGCCTTGGAGGCATGGCTGAATGTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGTAACCTCAGAAATTCAGCCTTGGAGGCATGGCTGAATGTTTTA  50

seq1  TTGTTCTCCAGGGTTTCATGTGAGTAAGTGTGTGTGTGTGTGTGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCCAGGGTTTCATGTGAGTAAGTGTGTGTGTGTGTGTGTGTGTG  100

seq1  TGT  103
      |||
seq2  TGT  103


seq1: chr3_159408478_159409600
seq2: B6Ng01-197A24.g_66_1202 (reverse)

seq1  GGGTAAAACAT---CCCAGAG-TCTTGGG--TAGTTTAAATA-ATT--GT  41
      |||||||||||   || |||| || || |  |||||| |||| |||  ||
seq2  GGGTAAAACATCTCCCGAGAGTTCCTGAGTATAGTTTTAATATATTTGGT  50

seq1  -TATTAGGTTGTCTTGCCAACAAAATCATTTGACATAAATGAAAGAG-TA  89
       ||| || ||||||||||||| ||||||| ||||   |||| ||||| ||
seq2  ATATCAGTTTGTCTTGCCAACCAAATCATGTGACCATAATG-AAGAGTTA  99

seq1  AAGATTTGAGTGAGAGGTTCA-CATTTCTTGAA-GGTAAAATTGGAT-GC  136
      |||| |||||||||||||||| ||||||||||| ||||||||||||| ||
seq2  AAGA-TTGAGTGAGAGGTTCACCATTTCTTGAAGGGTAAAATTGGATGGC  148

seq1  ATAA-TTTTTCTGTGGTTTGTGAATTTATTTACATAATAAGTGTCACAGG  185
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTTTCTGTGGTTTGTGAATTTATTTACATAATAAGTGTCACAGG  198

seq1  ATAAAAAGATCAAAATGCATTATATTCCTATGTAATCATTTCTCTAAACT  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGATCAAAATGCATTATATTCCTATGTAATCATTTCTCTAAACT  248

seq1  GGCAACAGTTGCAATACATGAAATGAGGTCAGTCTTAGAAAATCTGGCCT  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACAGTTGCAATACATGAAATGAGGTCAGTCTTAGAAAATCTGGCCT  298

seq1  ACACATTCAAGTATTTGGTGAGAAGAATGAAGAGATATTGCAATCAAGCA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTCAAGTATTTGGTGAGAAGAATGAAGAGATATTGCAATCAAGCA  348

seq1  GACTGACAAAAAGGGTAAAAATGAATAAAAGTTTAAATAGGGACTTCACT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACAAAAAGGGTAAAAATGAATAAAAGTTTAAATAGGGACTTCACT  398

seq1  GCACCTCTGACATATTTAAAAATTGTCCTTCAATACAGCAATCTTGAAGC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCTGACATATTTAAAAATTGTCCTTCAATACAGCAATCTTGAAGC  448

seq1  AAATAAAC-TTAAGAGAAACAAGCCTCTCTCTCTCTCTCTCTCTCTCTCT  484
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACTTTAAGAGAAACAAGCCTCTCTCTCTCTCTCTCTCTCTCTCT  498

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGT  548

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTCTAACCTCCT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTCTAACCTCCT  598

seq1  GTTCTTTTTTCTTTTTGAATGAAAAGGAGGTAAATAACCTGCAGTGATTG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTTTCTTTTTGAATGAAAAGGAGGTAAATAACCTGCAGTGATTG  648

seq1  GGAGGAGCCACAAAAGAAGTCCTAGGGTACACATGCCTCAGTTTAGCAAA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCCACAAAAGAAGTCCTAGGGTACACATGCCTCAGTTTAGCAAA  698

seq1  AGTTCTTCAGTAGACTGAGTAGGGACAATGAAATTCCTACTTCAAAGATT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTCAGTAGACTGAGTAGGGACAATGAAATTCCTACTTCAAAGATT  748

seq1  TCTCTTTCTTTTAAAGTATCTGTTATCTTGTCTGGAACATCAGACACACT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTTTTAAAGTATCTGTTATCTTGTCTGGAACATCAGACACACT  798

seq1  AGAGTCTCCTTCCATTCTTTCTAGTCAGAATGGATCAGACCAAACACTTG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTCCTTCCATTCTTTCTAGTCAGAATGGATCAGACCAAACACTTG  848

seq1  CTGTTTCACAAAGGAAAAGCAACTGACACACTTCCATGCAAGGTTGGGTA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCACAAAGGAAAAGCAACTGACACACTTCCATGCAAGGTTGGGTA  898

seq1  ACTATCAGGTTTAATTTTCCTTTATCTTGGAAATTTTTCATAGAAAAAGC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCAGGTTTAATTTTCCTTTATCTTGGAAATTTTTCATAGAAAAAGC  948

seq1  TCCTTTTAAAACATCAGCTATATAACATTAGCTCCATAAGTAAATGCTTA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTAAAACATCAGCTATATAACATTAGCTCCATAAGTAAATGCTTA  998

seq1  TTAATATACAATAGTTATTCTTATCATAAGAGTATCTCATTCCCACATGC  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATACAATAGTTATTCTTATCATAAGAGTATCTCATTCCCACATGC  1048

seq1  AGAAAAACTTGCCTGTCTGCTAGTAGTATTATTAGGGACAAGAGTGTTTT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACTTGCCTGTCTGCTAGTAGTATTATTAGGGACAAGAGTGTTTT  1098

seq1  CCTGTCCATTCATGTTTCAACTATTATTTAGCTGAATTC  1123
      |||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCATTCATGTTTCAACTATTATTTAGCTGAATTC  1137


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