BAC Information

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BAC

Clone NameB6Ng01-197B19
Chromosome3 (Build37)
Map Location 71,616,975 - 71,743,680
singlet/doubletdoublet
Overlap geneLOC667385
Upstream geneEG667377
Downstream geneLOC100041459, 2010204N08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197B19.bB6Ng01-197B19.g
ACCGA019065GA019066
length5131,176
definitionB6Ng01-197B19.b B6Ng01-197B19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,616,975 - 71,617,494)(71,742,482 - 71,743,680)
sequence
attaaaataggttgaagataaagaagtaaaatttatttaaataatttaat
gtatatgatctcactatttcagtgaaatccttttttctcaatgtgtctat
cttaacaaccacactattgaaaggtgacaataaagtttatggtatgataa
agttaaaaacagcccccaacttccagtttatcttgacattatatggcaat
tactaaaaaatatgacaattttctcaaaagacacatgaaaagaatgtgaa
gttaatgcctgttgttaagaaaaagagtttaatatatgctgaactctgtc
acataagataattgctgctccaggaaccaaatgatttaatgtcttgctaa
attattgtgaatttttcacgttaaattttttatcttaatactcgggagtg
ggtggattggagcaaggtaggagggaggaggggataggagatattcagag
aggaaacaaggaaagggggttcatttgaattgtaaatgatgaaaatatct
aataaaaaatgaa

gaattcttttaggacaaaacagttttactgtctaaaatgctttttatatg
ggcaaaataaatacttgctaaaatgtgttgaaagatgagaatcctgttgc
aaaccaaccattctataaaataggctacaaacattaatttcacacctttt
gtgcccctccactgagtacaaaacatgttttacctgtatttacgtgcatt
catttcttcgtggctaataaaaattgagcaaattaaaaagtaactatcca
tttttaatgctgtagtcattaaaataacagcacaaaatttatgacatgac
aaggtgctacactttatgttgaatagagtaatataaatcctcatcataaa
agaatggctttctgatgtatttcatgcttgttaaactataataattacct
atgtatctatatatctaaatctatgttcacagatatgatgataatgcttt
taacaagttacttcttaaacaatatttattctgtggttcaaatgttgaaa
gattttggtgatacattctcaatcatcttagagcattttacaaatacagg
taatacaaggaatgaaaatatacctacataattaacttttgacctgattc
tgcataaaaataagcccaataatgataatgtgtgcaatgatcataataga
gacatgagactacaattgtatatatttattcttatcaacaaatatattac
tgttcttgacctggatcctatgtatttaaatgattttctaaactgtctat
atatggtccaggaacaggagtgcatatacagaaaattgcacttaatagtt
ctttgaagctacccattatatatcaaattacctcattttaagcaatttct
ttgcatgtggaagagtatatgctggaaaagaatactcacatttctgtttc
ccctgacattttgtattctgtgaaaatatagatatagatgattgtaaaag
catagcatcaaaaagtcacaaaggaattcccagatttatacaagtaagat
ataaatttgtttaactcatagaaaatagcattagtatgtgaaatgattag
ccacatgctggagtgtctgtgaagcagaatcttttgaatttcggattatg
atatacagttcttaggcatggatgcataccttgtgaatagctataaaagt
aattcatgtaataatacaggaaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_71616975_71617494
seq2: B6Ng01-197B19.b_46_564

seq1  GAATTCATTAAAATAGGTTGAAGATAAAGAAGTAAAATTTATTTAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAAATAGGTTGAAGATAAAGAAGTAAAATTTATTTAAATAA  50

seq1  TTTAATGTATATGATCTCACTATTTCAGTGAAATCCTTTTTTCTCAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTATATGATCTCACTATTTCAGTGAAATCCTTTTTTCTCAATGT  100

seq1  GTCTATCTTAACAACCACACTATTGAAAGGTGACAATAAAGTTTATGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATCTTAACAACCACACTATTGAAAGGTGACAATAAAGTTTATGGTA  150

seq1  TGATAAAGTTAAAAACAGCCCCCAACTTCCAGTTTATCTTGACATTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAGTTAAAAACAGCCCCCAACTTCCAGTTTATCTTGACATTATAT  200

seq1  GGCAATTACTAAAAAATATGACAATTTTCTCAAAAGACACATGAAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTACTAAAAAATATGACAATTTTCTCAAAAGACACATGAAAAGAA  250

seq1  TGTGAAGTTAATGCCTGTTGTTAAGAAAAAGAGTTTAATATATGCTGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGTTAATGCCTGTTGTTAAGAAAAAGAGTTTAATATATGCTGAAC  300

seq1  TCTGTCACATAAGATAATTGCTGCTCCAGGAACCAAATGATTTAATGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCACATAAGATAATTGCTGCTCCAGGAACCAAATGATTTAATGTCT  350

seq1  TGCTAAATTATTGTGAATTTTTCACGTTAAATTTTTTATCTTAATACTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAATTATTGTGAATTTTTCACGTTAAATTTTTTATCTTAATACTCG  400

seq1  GGAGTGGGTGGATTGGAGCAAGGTAGGAGGGAGGAGGGGATAGGAGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGGTGGATTGGAGCAAGGTAGGAGGGAGGAGGGGATAGGAGATAT  450

seq1  TCAGAGAGGAAACAAGGAAAGGGGGTAGCATTTGAAATGTAAATGAAGAA  500
      ||||||||||||||||||||||||||  |||||||| ||||||||| |||
seq2  TCAGAGAGGAAACAAGGAAAGGGGGT-TCATTTGAATTGTAAATGATGAA  499

seq1  AATATCTAATAAAAAATGAA  520
      ||||||||||||||||||||
seq2  AATATCTAATAAAAAATGAA  519


seq1: chr3_71742482_71743680
seq2: B6Ng01-197B19.g_66_1241 (reverse)

seq1  TGTTTTCCTGTATTATTACAAATGATTTACTTTTTATTACCATACTACAG  50
      |||||||||||||||||||  |||| |||| ||||||  | || | ||| 
seq2  TGTTTTCCTGTATTATTAC--ATGAATTAC-TTTTATAGCTATTC-ACA-  45

seq1  AGTAATACATACCATGCCTATAGAACTGTATATCAATAATATCTGAAATT  100
      ||  || ||| ||||||||| ||||||||||||| |||  ||| ||||||
seq2  AGGTATGCAT-CCATGCCTA-AGAACTGTATATC-ATA--ATCCGAAATT  90

seq1  TTCCAAAAGATTTCTGCTTTTTCACAGACACT-CAGCATGGTGGCTAATT  149
         ||||||| ||||||   |||||||||||| |||||| |||||||| |
seq2  ---CAAAAGA-TTCTGC---TTCACAGACACTCCAGCAT-GTGGCTAA-T  131

seq1  CATTTCACATACTTAATGCTA-TTTCTATTGAGTTAAACAAATTTATATC  198
      |||||||||||| |||||||| |||||| |||||||||||||||||||| 
seq2  CATTTCACATAC-TAATGCTATTTTCTA-TGAGTTAAACAAATTTATAT-  178

seq1  CTTACTTGTATAAAATCTTGGGAATTTCCTTTGTGACTTTTTGATGCTAT  248
      ||||||||||| ||||| |||||| |||||||||||||||||||||||||
seq2  CTTACTTGTAT-AAATC-TGGGAA-TTCCTTTGTGACTTTTTGATGCTAT  225

seq1  GCTTTTACAATCATCTATATCTATATTTTCACAGAATACAAAATGTCAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTACAATCATCTATATCTATATTTTCACAGAATACAAAATGTCAGG  275

seq1  GGAAACAGAAATGTGAGTATTCTTTTCCAGCATATACTCTTCCACATGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAGAAATGTGAGTATTCTTTTCCAGCATATACTCTTCCACATGCA  325

seq1  AAGAAATTGCTTAAAATGAGGTAATTTGATATATAATGGGTAGCTTCAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTGCTTAAAATGAGGTAATTTGATATATAATGGGTAGCTTCAAA  375

seq1  GAACTATTAAGTGCAATTTTCTGTATATGCACTCCTGTTCCTGGACCATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATTAAGTGCAATTTTCTGTATATGCACTCCTGTTCCTGGACCATA  425

seq1  TATAGACAGTTTAGAAAATCATTTAAATACATAGGATCCAGGTCAAGAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACAGTTTAGAAAATCATTTAAATACATAGGATCCAGGTCAAGAAC  475

seq1  AGTAATATATTTGTTGATAAGAATAAATATATACAATTGTAGTCTCATGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATATATTTGTTGATAAGAATAAATATATACAATTGTAGTCTCATGT  525

seq1  CTCTATTATGATCATTGCACACATTATCATTATTGGGCTTATTTTTATGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTATGATCATTGCACACATTATCATTATTGGGCTTATTTTTATGC  575

seq1  AGAATCAGGTCAAAAGTTAATTATGTAGGTATATTTTCATTCCTTGTATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAGGTCAAAAGTTAATTATGTAGGTATATTTTCATTCCTTGTATT  625

seq1  ACCTGTATTTGTAAAATGCTCTAAGATGATTGAGAATGTATCACCAAAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTATTTGTAAAATGCTCTAAGATGATTGAGAATGTATCACCAAAAT  675

seq1  CTTTCAACATTTGAACCACAGAATAAATATTGTTTAAGAAGTAACTTGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAACATTTGAACCACAGAATAAATATTGTTTAAGAAGTAACTTGTT  725

seq1  AAAAGCATTATCATCATATCTGTGAACATAGATTTAGATATATAGATACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATTATCATCATATCTGTGAACATAGATTTAGATATATAGATACA  775

seq1  TAGGTAATTATTATAGTTTAACAAGCATGAAATACATCAGAAAGCCATTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAATTATTATAGTTTAACAAGCATGAAATACATCAGAAAGCCATTC  825

seq1  TTTTATGATGAGGATTTATATTACTCTATTCAACATAAAGTGTAGCACCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGATGAGGATTTATATTACTCTATTCAACATAAAGTGTAGCACCT  875

seq1  TGTCATGTCATAAATTTTGTGCTGTTATTTTAATGACTACAGCATTAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGTCATAAATTTTGTGCTGTTATTTTAATGACTACAGCATTAAAA  925

seq1  ATGGATAGTTACTTTTTAATTTGCTCAATTTTTATTAGCCACGAAGAAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATAGTTACTTTTTAATTTGCTCAATTTTTATTAGCCACGAAGAAAT  975

seq1  GAATGCACGTAAATACAGGTAAAACATGTTTTGTACTCAGTGGAGGGGCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCACGTAAATACAGGTAAAACATGTTTTGTACTCAGTGGAGGGGCA  1025

seq1  CAAAAGGTGTGAAATTAATGTTTGTAGCCTATTTTATAGAATGGTTGGTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGTGTGAAATTAATGTTTGTAGCCTATTTTATAGAATGGTTGGTT  1075

seq1  TGCAACAGGATTCTCATCTTTCAACACATTTTAGCAAGTATTTATTTTGC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAGGATTCTCATCTTTCAACACATTTTAGCAAGTATTTATTTTGC  1125

seq1  CCATATAAAAAGCATTTTAGACAGTAAAACTGTTTTGTCCTAAAAGAATT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATAAAAAGCATTTTAGACAGTAAAACTGTTTTGTCCTAAAAGAATT  1175

seq1  C  1199
      |
seq2  C  1176


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