BAC Information

Click to search

BAC

Clone NameB6Ng01-197I15
Chromosome3 (Build37)
Map Location 95,398,813 - 95,528,152
singlet/doubletdoublet
Overlap geneGolph3l, EG668457, Ensa, Mcl1, Adamtsl4
Upstream geneEG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1
Downstream geneEcm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197I15.bB6Ng01-197I15.g
ACCGA019373GA019374
length764658
definitionB6Ng01-197I15.b B6Ng01-197I15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,527,536 - 95,528,152)(95,398,813 - 95,399,467)
sequence
gaattcttggagtcccctgatcctcgtacatcagtctcccaaatacctag
gaatacaggtccttcatctggctctggctccaagatactgtttggttgta
gtttggtttgactttgtactttttgatttcctaaaaaaaagatgatccca
ttagcctaagctggccttgaactcactgtgtagccaaggatggccttcaa
cacctgattctccaccctccacagccagggtgctgggactacaggtgcgc
gtcaacagtcccggcttttgctggggattgtacacaggtgtcctgtctgc
taggcaggatttctttttttttttttttttttttaattcttttttctttt
cttttcttttcttttctttttttttttttttttttttgagtggggagggg
ctggaaattacaagaatctgcctgactctggccccaagtgctggaattaa
aggtagatgccaccatgtccaggttttaaaataatatattttaaaaattt
ggttttgtccaggaatgatagtgaatggctttgattccagcactcagaag
gcagaaacaggcagatctctgtgagttcacaaccagcctggtctacagag
agagttccaggacaggcagggctacagcagagaaaccctgttaaaaacaa
acaaataaacaaacaatagtaataaaatcttgctttttgaaaattttgca
taaattcactaagttgggcactgctgtccacgtccataatcccagcactt
agtgagagcacggg
gaattcccagcacccacatgtgcacccacatggcagctcacagccatcag
atccatagcatcctatgcccttttctggcctggtgtagaccccaggcatg
ctcatggccccgacaaatatggagaagaaacatccatgtacataaaaatt
taatttaaagaagttatttgattatatacatctagtaacatctctacctc
cttaattgtttgacttgagaatgcctttacttcttaaactttgtagattt
tatttatttaatatgtctgttttccgtcttgtaatcctataaaaatatca
aggtaaacttcatataagctatccattttattttttgaaaatgtttttgg
tgtgtgtatgtgtgtgtatgtagtgctgtggctcatgaagaccaaaatag
gttggatgccctaggagttctaccattctttgctttatttccttgaaaca
gaatctctagttaaccttggagctaggctgacagctaacatgttctaatg
attttcctgtttctatctcccatcactcagaggttacagacacccattgt
tatatccagcttgtttatgtagatgttgtgaattgggtcttcatgccaag
ggttcttgcatacatacagccccttgtacttttttaaagatgtcatttct
aggaggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95527536_95528152
seq2: B6Ng01-197I15.b_44_659 (reverse)

seq1  CCTGTCCTGGAACTCTCTCTGTAGACCAGGCTGGTTGTGAACTCACAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCTGGAACTCTCTCTGTAGACCAGGCTGGTTGTGAACTCACAGAG  50

seq1  ATCTGCCTGTTTCTGCCTTCTGAGTGCTGGGATCAAAGCCATTCACTATC  100
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATCTGCCTGTTTCTGCCTTCTGAGTGCTGGAATCAAAGCCATTCACTATC  100

seq1  ATTCCTGGACAAAACCAAATTTTTAAAATATATTATTTTAAAACCTGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGGACAAAACCAAATTTTTAAAATATATTATTTTAAAACCTGGAC  150

seq1  ATGGTGGCATCTACCTTTAATTCCAGCACTTGGGGCCAGAGTCAGGCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGCATCTACCTTTAATTCCAGCACTTGGGGCCAGAGTCAGGCAGA  200

seq1  TTCTTGTAATTTCCAGCCCCTCCCCACTCANGAAAAAAAAAAAAAAAAAA  250
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  TTCTTGTAATTTCCAGCCCCTCCCCACTCAA-AAAAAAAAAAAAAAAAAA  249

seq1  GGAAAAGAAAAGAAAAGAAAAGAAAAAAGATATTAAAAAAAAAAAAAAAA  300
       |||||||||||||||||||||||||||||  | ||||||||||||||||
seq2  AGAAAAGAAAAGAAAAGAAAAGAAAAAAGAATTAAAAAAAAAAAAAAAAA  299

seq1  AAAAGGAATCCTGCCTAGCAGACAGGACACCTGTGTACAATCCCCAGCAA  350
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATCCTGCCTAGCAGACAGGACACCTGTGTACAATCCCCAGCAA  349

seq1  AAGCCGGGACTGTTGACGCGCACCTGTAGTCCCAGCACCCTGGCTGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGGGACTGTTGACGCGCACCTGTAGTCCCAGCACCCTGGCTGTGGA  399

seq1  GGGTGGAGAATCAGGTGTTGAAGGCCATCCTTGGCTACACAGTGAGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAGAATCAGGTGTTGAAGGCCATCCTTGGCTACACAGTGAGTTCA  449

seq1  AGGCCAGCTTAGGCTAATGGGATCATCTTTTTTTTAGGAAATCAAAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCTTAGGCTAATGGGATCATCTTTTTTTTAGGAAATCAAAAAGT  499

seq1  ACAAAGTCAAACCAAACTACAACCAAACAGTATCTTGGAGCCAGAGCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTCAAACCAAACTACAACCAAACAGTATCTTGGAGCCAGAGCCAG  549

seq1  ATGAAGGACCTGTATTCCTAGGTATTTGGGAGACTGATGTACGAGGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGACCTGTATTCCTAGGTATTTGGGAGACTGATGTACGAGGATCA  599

seq1  GGGGACTCCAAGAATTC  617
      |||||||||||||||||
seq2  GGGGACTCCAAGAATTC  616

seq1: chr3_95398813_95399467
seq2: B6Ng01-197I15.g_71_728

seq1  GAATTCCCAGCACCCACATG-GCACCCACATGGCAGCTCACAGCCATCAG  49
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAATTCCCAGCACCCACATGTGCACCCACATGGCAGCTCACAGCCATCAG  50

seq1  ATCCATAGCATCCTATGCCCTTTTCTGGCCTGGTGTAGACCCCAGGCATG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAGCATCCTATGCCCTTTTCTGGCCTGGTGTAGACCCCAGGCATG  100

seq1  CTCATGGCCCCGACAAATATGGAGAAGAAACATCCATGTACATAAAAATT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGCCCCGACAAATATGGAGAAGAAACATCCATGTACATAAAAATT  150

seq1  TAATTTAAAGAAGTTATTTGATTATATACATCTAGTAACATCTCTACCTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAAAGAAGTTATTTGATTATATACATCTAGTAACATCTCTACCTC  200

seq1  CTTAATTGTTTGACTTGAGAATGCCTTTACTTCTTAAACTTTGTAGATTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTGTTTGACTTGAGAATGCCTTTACTTCTTAAACTTTGTAGATTT  250

seq1  TATTTATTTAATATGTCTGTTTTCCGTCTTGTAATCCTATAAAAATATCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTAATATGTCTGTTTTCCGTCTTGTAATCCTATAAAAATATCA  300

seq1  AGGTAAACTTCATATAAGCTATCCATTTTATTTTTTGAAAATGTTTTTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAACTTCATATAAGCTATCCATTTTATTTTTTGAAAATGTTTTTGG  350

seq1  TGTGTGTATGTGTGTGTATGTAGTGCTGTGGCTCATGAAGACCAAAATAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATGTGTGTGTATGTAGTGCTGTGGCTCATGAAGACCAAAATAG  400

seq1  GTTGGATGCCCTAGGAGTTCTACCATTCTTTGCTTTATTTCCTTGAAACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATGCCCTAGGAGTTCTACCATTCTTTGCTTTATTTCCTTGAAACA  450

seq1  GAATCTCTAGTTAACCTTGGAGCTAGGCTGACAGCTAACATGTTCTAATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTAGTTAACCTTGGAGCTAGGCTGACAGCTAACATGTTCTAATG  500

seq1  ATTTTCCTGTTTCTATCTCCCATCACTCAGAGGTTACAGACACCCATTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTGTTTCTATCTCCCATCACTCAGAGGTTACAGACACCCATTGT  550

seq1  TATATCCAGCTTG-TTATGTAGATGTTGTGAATTGGGTCTTCATGCCAAG  598
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATATCCAGCTTGTTTATGTAGATGTTGTGAATTGGGTCTTCATGCCAAG  600

seq1  GGTTCTTGCATACATACAGCCCC-TGTACTTTTTTAAAGATGTCATTTCT  647
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGTTCTTGCATACATACAGCCCCTTGTACTTTTTTAAAGATGTCATTTCT  650

seq1  AGGAGGTC  655
      ||||||||
seq2  AGGAGGTC  658