BAC Information

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BAC

Clone NameB6Ng01-197J23
Chromosome2 (Build37)3 (Build37)
Map Location 49,826,168 - 49,826,539106,002,148 - 106,003,106
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c, 2310010M24Rik
Downstream geneLypd6, 2010311D03Rik, LOC666781, LOC227885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197J23.bB6Ng01-197J23.g
ACCGA019437GA019438
length372961
definitionB6Ng01-197J23.b B6Ng01-197J23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,826,168 - 49,826,539)(106,002,148 - 106,003,106)
sequence
cctgtaagtaatgtgggaatgagaacttccttccatttagttacttgaaa
acacctcaggggaaaaatgagtaaaagacaggaaaatttctggatgagtt
tattaaaacgtgagtcactagctcactaaccaatgttcacccaaagcaaa
ctaaaagcaaacgaattatctgggtatcctctactgtgtagataaggcaa
gtgtctgctatgactatggcaaagccattcttgttcaagggaaaggcaaa
tgcagggagggaccaggtatgcacacagacctgctttgtgtctggatgtg
gctcagtaggcatttctttatactcccttctttctgatgatggtgtggtt
ctggggatgggggtgtctgggt
gaattcatgacaaagtaagcttgaatggctgaaaagcacttgaaaaaaat
gctcaaagtccttagtgatcaaggagatgcaaatctaaatgatcctgaga
ttctatcttacaccagtcagaatggctaagatcaaaacacaggtgacagc
acatgttggcaaggatatgataaaagaacattcctctactgctggtggga
ttgcaaactggcacaaccactctggaaatcaatctggagggtcctcagaa
aattggaaatagatctacctgaagaactatttgtttttaatgaggaattc
agattctttgccagacatttggtagctttaaaatgagagtgaagcagact
ttttgatttataatcacaactgaacataatgtttcttacagtgtatttta
gtggatgccacataaaagtctacagaggacaaaggctgtggtgtcaaaac
tacatgagaatttctatgtcaaacatctcagtggcatccattgtaaatcc
ttctggcacatacatacactgtcattataggaattacccaagctcccaat
aaaaaatggtgacaaattattcacaaatacactaaaaactaccaatccct
actaggtacctgtcaccattagtaaatatttggtccactggatggagtgt
taatatttttttttcaaactgcaagaggactttttatttcaagagcgctc
tccggcccacagtcatacaccacgcagggtagaggaccgtggcaccccaa
gtagctgaataagggggtatttaatagaagaaaccacaactcaaggagga
aggtagggcattgttgggaaataccaaaaataccagtttaagagtcacaa
ggaagtggaaagtcaagacagttttctagaaacttctaacaatagcacct
ttggcatagcatattacagcaacagtcagggtgggtcaggtgaacttcct
ttgaatgaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_49826168_49826539
seq2: B6Ng01-197J23.b_54_425

seq1  CCTGTAAGTAATGTGGGAATGAGAACTTCCTTCCATTTAGTTACTTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAGTAATGTGGGAATGAGAACTTCCTTCCATTTAGTTACTTGAAA  50

seq1  ACACCTCAGGGGAAAAATGAGTAAAAGACAGGAAAATTTCTGGATGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCAGGGGAAAAATGAGTAAAAGACAGGAAAATTTCTGGATGAGTT  100

seq1  TATTAAAACGTGAGTCACTAGCTCACTAACCAATGTTCACCCAAAGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAACGTGAGTCACTAGCTCACTAACCAATGTTCACCCAAAGCAAA  150

seq1  CTAAAAGCAAACGAATTATCTGGGTATCCTCTACTGTGTAGATAAGGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGCAAACGAATTATCTGGGTATCCTCTACTGTGTAGATAAGGCAA  200

seq1  GTGTCTGCTATGACTATGGCAAAGCCATTCTTGTTCAAGGGAAAGGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGCTATGACTATGGCAAAGCCATTCTTGTTCAAGGGAAAGGCAAA  250

seq1  TGCAGGGAGGGACCAGGTATGCACACAGACCTGCTTTGTGTCTGGATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGAGGGACCAGGTATGCACACAGACCTGCTTTGTGTCTGGATGTG  300

seq1  GCTCAGTAGGCATTTCTTTATACTCCCTTCTTTCTGATGATGGTGTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTAGGCATTTCTTTATACTCCCTTCTTTCTGATGATGGTGTGGTT  350

seq1  CTGGGGATGGGGGTGTCTGGGT  372
      ||||||||||||||||||||||
seq2  CTGGGGATGGGGGTGTCTGGGT  372

seq1: chr3_106002148_106003106
seq2: B6Ng01-197J23.g_71_1031 (reverse)

seq1  TGTTCATTCAAAGAAAGTCACCCTGACCCACCCTGACTGTTGCTGTAATA  50
      ||||||||||||| ||||   |||||||||||||||||||||||||||||
seq2  TGTTCATTCAAAGGAAGTTCACCTGACCCACCCTGACTGTTGCTGTAATA  50

seq1  TGCTATG-CAAAGGTGCTATTGTTAGAAGTTTCTAGAAAACTGTCTTGAC  99
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGCCAAAGGTGCTATTGTTAGAAGTTTCTAGAAAACTGTCTTGAC  100

seq1  TTTCCACTTCCTTGTGACTCTT-AACTGGTATTTTTGGTATTTCCCAACA  148
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTCCACTTCCTTGTGACTCTTAAACTGGTATTTTTGGTATTTCCCAACA  150

seq1  ATGCCCTACCTTCCTCCTTGAGTTGTGGTTTCTTCTATTAAATACCCCCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTACCTTCCTCCTTGAGTTGTGGTTTCTTCTATTAAATACCCCCT  200

seq1  TATTCAGCTACTTGGGGTGCCACGGTCCTCTACCCTGCGTGGTGTATGAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGCTACTTGGGGTGCCACGGTCCTCTACCCTGCGTGGTGTATGAC  250

seq1  TGTGGGCCGGAGAGCGCTCTTGAAATAAAAAGTCCTCTTGCAGTTTGAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCCGGAGAGCGCTCTTGAAATAAAAAGTCCTCTTGCAGTTTGAAA  300

seq1  AAAAAATATTAACACTCCATCCAGTGGACCAAATATTTACTAATGGTGAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATATTAACACTCCATCCAGTGGACCAAATATTTACTAATGGTGAC  350

seq1  AGGTACCTAGTAGGGATTGGTAGTTTTTAGTGTATTTGTGAATAATTTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACCTAGTAGGGATTGGTAGTTTTTAGTGTATTTGTGAATAATTTGT  400

seq1  CACCATTTTTTATTGGGAGCTTGGGTAATTCCTATAATGACAGTGTATGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTTTTATTGGGAGCTTGGGTAATTCCTATAATGACAGTGTATGT  450

seq1  ATGTGCCAGAAGGATTTACAATGGATGCCACTGAGATGTTTGACATAGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCAGAAGGATTTACAATGGATGCCACTGAGATGTTTGACATAGAA  500

seq1  ATTCTCATGTAGTTTTGACACCACAGCCTTTGTCCTCTGTAGACTTTTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCATGTAGTTTTGACACCACAGCCTTTGTCCTCTGTAGACTTTTAT  550

seq1  GTGGCATCCACTAAAATACACTGTAAGAAACATTATGTTCAGTTGTGATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATCCACTAAAATACACTGTAAGAAACATTATGTTCAGTTGTGATT  600

seq1  ATAAATCAAAAAGTCTGCTTCACTCTCATTTTAAAGCTACCAAATGTCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCAAAAAGTCTGCTTCACTCTCATTTTAAAGCTACCAAATGTCTG  650

seq1  GCAAAGAATCTGAATTCCTCATTAAAAACAAATAGTTCTTCAGGTAGATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAATCTGAATTCCTCATTAAAAACAAATAGTTCTTCAGGTAGATC  700

seq1  TATTTCCAATTTTCTGAGGACCCTCCAGATTGATTTCCAGAGTGGTTGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCAATTTTCTGAGGACCCTCCAGATTGATTTCCAGAGTGGTTGTG  750

seq1  CCAGTTTGCAATCCCACCAGCAGTAGAGGAATGTTCTTTTATCATATCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTGCAATCCCACCAGCAGTAGAGGAATGTTCTTTTATCATATCCT  800

seq1  TGCCAACATGTGCTGTCACCTGTGTTTTGATCTTAGCCATTCTGACTGGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACATGTGCTGTCACCTGTGTTTTGATCTTAGCCATTCTGACTGGT  850

seq1  GTAAGATAGAATCTCAGGATCATTTAGATTTGCATCTCCTTGATCACTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATAGAATCTCAGGATCATTTAGATTTGCATCTCCTTGATCACTAA  900

seq1  GGACTTTGAGCATTTTTTTCAAGTGCTTTTCAGCCATTCAAGCTTACTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTGAGCATTTTTTTCAAGTGCTTTTCAGCCATTCAAGCTTACTTT  950

seq1  GTCATGAATTC  959
      |||||||||||
seq2  GTCATGAATTC  961