BAC Information

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BAC

Clone NameB6Ng01-197K07
Chromosome3 (Build37)
Map Location 143,230,922 - 143,368,111
singlet/doubletdoublet
Overlap geneEG668889, EG621809
Upstream geneGbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883, 1700001N15Rik
Downstream geneLOC100039938, LOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197K07.bB6Ng01-197K07.g
ACCGA019452GA019453
length1,085288
definitionB6Ng01-197K07.b B6Ng01-197K07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,367,027 - 143,368,111)(143,230,922 - 143,231,209)
sequence
gaattccttgtgtgtgttcatttgtatgctgcatgatatgtgcttgtgtg
tatataatgtgtgtggaagtagcaagcttgtgtcatggtatgagtatgga
agtcacaggacaactttgatgtctgtcttgccttctatcttgtttgagac
agagtctcgtgtttgccactgcagatagtaggctagctgacctgtgcatt
tccaagattcaccttcttcatcttctatcttgtgctggcattacagatta
ttataaccacatccagctttccaacagacttgaagtcagttctcatgttt
attcaggaagcactttactaactgagctgtctctccagacccagttctgc
cttcttaaatgactggtttgactatctatcatggtaaatattctacatta
taggtaacagatatcatactttttattgcagtaccaaatacaacttatat
tttgtcaagagtagcaaaatattttataatgcagcataaattgttttaat
tataaatgtaatatggatgtgctgcagccatttaagtgtcatataaaagg
gaaaggtgagagatttacctgtgtgactacatgtaataacttgacacata
acttttcagatattgcttgattaacttgcgtgcatattactgctaacaaa
ttctattgtattaatcatttcattatgtaagaaatcagttttaccacttg
attattaatgttgtgtcattcattaattcaatacatattgagtgctatca
aaagccaaaaattttctaagaaaggaggattttgaggtaaataaatatct
atgtcagcactttacagattgtgatttgaaataaatatatatcatcctgt
caatcaggtttgccattttttaatgctatttaatccttttcctatctatg
gtcagcagaattcttttaccacataataacaacttcactgatgatgagaa
gtattcatttattgattttatcactaaagccgttttttaagaattctgtt
agatgcagtcacctatgtgctcaaatgaggaagagtgcatcaatcctttc
tttaaaaggacttcataataaaattattcaaaata
tagtttcaacagctcctccagtgtcatgggattccatctaagccatccct
ctgctatcgttcatgccctcctcgaatgcctacagcatcatttgggctgt
gttcatgagctacacattttatgttgctggttttcttcttgtgctcattt
ctgaattttctaagaaaacatgttgtgttttccacttgtatataatacct
ctagggacagccagtattagatttccaatttggatacactctgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_143367027_143368111
seq2: B6Ng01-197K07.b_42_1126 (reverse)

seq1  TATTTTG-ATAATTTTATTATGAAGT-CTTTTAAAG-AAGGATTGATGCA  47
      ||||||| |||||||||||||||||| ||||||||| |||||||||||||
seq2  TATTTTGAATAATTTTATTATGAAGTCCTTTTAAAGAAAGGATTGATGCA  50

seq1  CTC-TCCTCATTTTGAGCACATAGGTGACTGCATCTTAACAGATTCTTTA  96
      ||| |||||| |||||||||||||||||||||||| ||||||| |  |||
seq2  CTCTTCCTCA-TTTGAGCACATAGGTGACTGCATC-TAACAGAATTCTTA  98

seq1  AAAAACGGCCTTTAGTGATAAAATCAATAAATGAATACTTCTCATCATCA  146
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACGG-CTTTAGTGATAAAATCAATAAATGAATACTTCTCATCATCA  147

seq1  GTGAAGTTGTTATTATGTGGTAAAAGAATTCCTGCTGACCATAGATAGGA  196
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTGAAGTTGTTATTATGTGGTAAAAGAATT-CTGCTGACCATAGATAGGA  196

seq1  AAAGGATTAAATAGCATTAAAAAATGGCAAACCTGATTGACAGGATGATA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATTAAATAGCATTAAAAAATGGCAAACCTGATTGACAGGATGATA  246

seq1  TATATTTATTTCAAATCACAATCTGTAAAGTGCTGACATAGATATTTATT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTATTTCAAATCACAATCTGTAAAGTGCTGACATAGATATTTATT  296

seq1  TACCTCAAAATCCTCCTTTCTTAGAAAATTTTTGGCTTTTGATAGCACTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAAAATCCTCCTTTCTTAGAAAATTTTTGGCTTTTGATAGCACTC  346

seq1  AATATGTATTGAATTAATGAATGACACAACATTAATAATCAAGTGGTAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTATTGAATTAATGAATGACACAACATTAATAATCAAGTGGTAAA  396

seq1  ACTGATTTCTTACATAATGAAATGATTAATACAATAGAATTTGTTAGCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTCTTACATAATGAAATGATTAATACAATAGAATTTGTTAGCAG  446

seq1  TAATATGCACGCAAGTTAATCAAGCAATATCTGAAAAGTTATGTGTCAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGCACGCAAGTTAATCAAGCAATATCTGAAAAGTTATGTGTCAAG  496

seq1  TTATTACATGTAGTCACACAGGTAAATCTCTCACCTTTCCCTTTTATATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACATGTAGTCACACAGGTAAATCTCTCACCTTTCCCTTTTATATG  546

seq1  ACACTTAAATGGCTGCAGCACATCCATATTACATTTATAATTAAAACAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAAATGGCTGCAGCACATCCATATTACATTTATAATTAAAACAAT  596

seq1  TTATGCTGCATTATAAAATATTTTGCTACTCTTGACAAAATATAAGTTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTGCATTATAAAATATTTTGCTACTCTTGACAAAATATAAGTTGT  646

seq1  ATTTGGTACTGCAATAAAAAGTATGATATCTGTTACCTATAATGTAGAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTACTGCAATAAAAAGTATGATATCTGTTACCTATAATGTAGAAT  696

seq1  ATTTACCATGATAGATAGTCAAACCAGTCATTTAAGAAGGCAGAACTGGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCATGATAGATAGTCAAACCAGTCATTTAAGAAGGCAGAACTGGG  746

seq1  TCTGGAGAGACAGCTCAGTTAGTAAAGTGCTTCCTGAATAAACATGAGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGAGACAGCTCAGTTAGTAAAGTGCTTCCTGAATAAACATGAGAA  796

seq1  CTGACTTCAAGTCTGTTGGAAAGCTGGATGTGGTTATAATAATCTGTAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTCAAGTCTGTTGGAAAGCTGGATGTGGTTATAATAATCTGTAAT  846

seq1  GCCAGCACAAGATAGAAGATGAAGAAGGTGAATCTTGGAAATGCACAGGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCACAAGATAGAAGATGAAGAAGGTGAATCTTGGAAATGCACAGGT  896

seq1  CAGCTAGCCTACTATCTGCAGTGGCAAACACGAGACTCTGTCTCAAACAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGCCTACTATCTGCAGTGGCAAACACGAGACTCTGTCTCAAACAA  946

seq1  GATAGAAGGCAAGACAGACATCAAAGTTGTCCTGTGACTTCCATACTCAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAGGCAAGACAGACATCAAAGTTGTCCTGTGACTTCCATACTCAT  996

seq1  ACCATGACACAAGCTTGCTACTTCCACACACATTATATACACACAAGCAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGACACAAGCTTGCTACTTCCACACACATTATATACACACAAGCAC  1046

seq1  ATATCATGCAGCATACAAATGAACACACACAAGGAATTC  1085
      |||||||||||||||||||||||||||||||||||||||
seq2  ATATCATGCAGCATACAAATGAACACACACAAGGAATTC  1085

seq1: chr3_143230922_143231209
seq2: B6Ng01-197K07.g_72_359

seq1  TAGTTTCAACAGCTCCTCCAGTGTCATGGGATTCCATCTAAGCCATCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCAACAGCTCCTCCAGTGTCATGGGATTCCATCTAAGCCATCCCT  50

seq1  CTGCTATCGTTCATGCCCTCCTCGAATGCCTACAGCATCATTTGGGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATCGTTCATGCCCTCCTCGAATGCCTACAGCATCATTTGGGCTGT  100

seq1  GTTCATGAGCTACACATTTTATGTTGCTGGTTTTCTTCTTGTGCTCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGAGCTACACATTTTATGTTGCTGGTTTTCTTCTTGTGCTCATTT  150

seq1  CTGAATTTTCTAAGAAAACATGTTGTGTTTTCCACTTGTATATAATACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTTCTAAGAAAACATGTTGTGTTTTCCACTTGTATATAATACCT  200

seq1  CTAGGGACAGCCAGTATTAGATTTCCAATTTGGATACACTCTGTGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGACAGCCAGTATTAGATTTCCAATTTGGATACACTCTGTGTGTGT  250

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGA  288
      ||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGA  288