BAC Information

Click to search

BAC

Clone NameB6Ng01-197O09
Chromosome3 (Build37)
Map Location 84,764,488 - 84,909,416
singlet/doubletdoublet
Overlap geneFbxw7, Dear1
Upstream geneD930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889
Downstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019, Sh3d19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197O09.bB6Ng01-197O09.g
ACCGA019640GA019641
length7491,213
definitionB6Ng01-197O09.b B6Ng01-197O09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,908,671 - 84,909,416)(84,764,488 - 84,765,676)
sequence
gaattcagttttgtcctaattcagaggtaggaataaatggtttttttttt
ccagagtgagtcattttgttcaacactaatctgttcagccatgtcaaacc
tttccacactacaacgcaacaatttcatctacaaagctcacacttgagaa
ccacacaattgaatctctctctctctctgtctctctctctctctctctct
ctgtctctctctctgttagtctccatctccctctcctctccctcccccct
ctccctctcacttgcacactaaacaactaatttagtgtttacacaaatgg
aaacaaacttataaagcggtcaatgatgttagttatgattcacattattg
ttatagtgttatttcatatcttcctatttatagtgttatttcatatcttc
atatttatacagaaaagtttccataaagttataacctaaaatcttaataa
tatttctctctagaagacaggagtatggattttcctccttctttttgccg
atttgtgtttttttttttctaaattttccatccatgaaaatgcattgatc
tcctaataagtagtaacaagttattttttaatttgtggggagacgatttt
tggggtgggtgtggaggttagcatccctacaatcgagagtgacccacacg
tatactacagcctggagtatacataagccgtcgtggatgtactggggcat
agtagcactctgtgcttttgtgtcttggtgaaggactcatctgggcgca
gaattctttctaatattgatctgcaatagtgggggtattaatgctttctt
ctcatgaggctgttttagagagccctttatacagtggttatttaataaaa
tttccaaatgttatacttgttacagctcagctttagaaatgttaactata
aaagtaaaatcagaacacccaactgtgagtctctaaacccatttggtcct
agaaaagtatgtcttttatatgagtagttgcagtgagagatcattctttt
attttatttattcactttacatcctgattgctgcccccccccagtctctc
cccacctccctccccttttcttctgagaaaatggagtgccccctcccccc
cgaaaacccagcacatcatgtctctgcagggctaggtgcttcttccccca
ctgaggccaggcaagacagctgagttggggacatattccacagacaagca
acagctttagggtgtagtaggattgaggaccctgaaggggataggaactc
cacagggagaccaacagagttaactaacctggactctcagagactgaacc
attaactaaagagcatacatgggctggacctacaccccccaccacacaca
tgtagcagaagtcagcttgatcttcatgtgagtcctgaataactggaaag
agctcatttttagttcatagaaacaatgtagaattatctgtgcaagtaga
aaacgtaatcctcctgacccaagacattctgtagcaactaaacgtcaacc
tgacaaggtagatccagccttgatcttctgagcttcaagtctgtctctga
cataacccaggactcgttgccatacactgcccttgtcttagctagagttt
ttattgctgtgaagagacatcgtgaccacgataaaaggaaaacatttaat
tgggacttggctttacagtttcagaggcctcagttcaattgtcatcatgg
cagggatgcatgacagcatgcaaggcagacatggtgcctggagaaggagc
tgaaagtctacattctgatcttgcagttcagcagaaagaaactacttgcc
acacttgggccaatagctttgaaatagaataaaaccttcaaagccaaatc
caaggtgacacacactcttcaaacaggcccaaccctcaaataatagtgcc
actctccatagctaggcactccaaacacctggagtctatacagagcattt
ctccacagtgttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_84908671_84909416
seq2: B6Ng01-197O09.b_48_796 (reverse)

seq1  TGCGCCCAGATGAGTCCTTCACCAAGACAC-AAAGCACAGAGTGCTACTC  49
      |||||||||||||||||||||||||||||| |||||||||||||||||| 
seq2  TGCGCCCAGATGAGTCCTTCACCAAGACACAAAAGCACAGAGTGCTACTA  50

seq1  TGCCCC-GTGCCTCC-CGACGGCTTATGTATACTCCAGGCTGTAGTATAC  97
      |||||| || | ||| ||||||||||||||||||||||||||||||||||
seq2  TGCCCCAGTACATCCACGACGGCTTATGTATACTCCAGGCTGTAGTATAC  100

seq1  GTGTGGGTCACTCTCGATTGTAGGGATGCTAACCTCCACACCCACCCCAA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTCACTCTCGATTGTAGGGATGCTAACCTCCACACCCACCCCAA  150

seq1  AAATCGTCTCCCCACAAATTAAAAAATAACTTGTTACTACTTATTAGGAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGTCTCCCCACAAATTAAAAAATAACTTGTTACTACTTATTAGGAG  200

seq1  ATCAATGCATTTTCATGGATGGAAAATTTAGAAAAAAAAAAACACAAATC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGCATTTTCATGGATGGAAAATTTAGAAAAAAAAAAACACAAATC  250

seq1  GGCAAAAAGAAGGAGGAAAATCCATACTCCTGTCTTCTAGAGAGAAATAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAAGAAGGAGGAAAATCCATACTCCTGTCTTCTAGAGAGAAATAT  300

seq1  TATTAAGATTTTAGGTTATAACTTTATGGAAACTTTTCTGTATAAATATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGATTTTAGGTTATAACTTTATGGAAACTTTTCTGTATAAATATG  350

seq1  AAGATATGAAATAACACTATAAATAGGAAGATATGAAATAACACTATAAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATGAAATAACACTATAAATAGGAAGATATGAAATAACACTATAAC  400

seq1  AATAATGTGAATCATAACTAACATCATTGACCGCTTTATAAGTTTGTTTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTGAATCATAACTAACATCATTGACCGCTTTATAAGTTTGTTTC  450

seq1  CATTTGTGTAAACACTAAATTAGTTGTTTAGTGTGCAAGTGAGAGGGAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGTAAACACTAAATTAGTTGTTTAGTGTGCAAGTGAGAGGGAGA  500

seq1  GGGGGGAGGGAGAGGAGAGGGAGATGGAGACTAACAGAGAGAGAGACAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGAGGGAGAGGAGAGGGAGATGGAGACTAACAGAGAGAGAGACAGA  550

seq1  GAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGATTCAATTGTGTGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGATTCAATTGTGTGGT  600

seq1  TCTCAAGTGTGAGCTTTGTAGATGAAATTGTTGCGTTGTAGTGTGGAAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGTGTGAGCTTTGTAGATGAAATTGTTGCGTTGTAGTGTGGAAAG  650

seq1  GTTTGACATGGCTGAACAGATTAGTGTTGAACAAAATGACTCACTCTGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACATGGCTGAACAGATTAGTGTTGAACAAAATGACTCACTCTGGA  700

seq1  AAAAAAAAACCATTTATTCCTACCTCTGAATTAGGACAAAACTGAATTC  746
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACCATTTATTCCTACCTCTGAATTAGGACAAAACTGAATTC  749

seq1: chr3_84764488_84765676
seq2: B6Ng01-197O09.g_67_1279

seq1  GAATTCTTTCTAATATTGATCTGCAATAGTGGGGGTATTAATGCTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTAATATTGATCTGCAATAGTGGGGGTATTAATGCTTTCTT  50

seq1  CTCATGAGGCTGTTTTAGAGAGCCCTTTATACAGTGGTTATTTAATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAGGCTGTTTTAGAGAGCCCTTTATACAGTGGTTATTTAATAAAA  100

seq1  TTTCCAAATGTTATACTTGTTACAGCTCAGCTTTAGAAATGTTAACTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAATGTTATACTTGTTACAGCTCAGCTTTAGAAATGTTAACTATA  150

seq1  AAAGTAAAATCAGAACACCCAACTGTGAGTCTCTAAACCCATTTGGTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAATCAGAACACCCAACTGTGAGTCTCTAAACCCATTTGGTCCT  200

seq1  AGAAAAGTATGTCTTTTATATGAGTAGTTGCAGTGAGAGATCATTCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTATGTCTTTTATATGAGTAGTTGCAGTGAGAGATCATTCTTTT  250

seq1  ATTTTATTTATTCACTTTACATCCTGATTGCTGCCCCCCCCCAGTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTATTCACTTTACATCCTGATTGCTGCCCCCCCCCAGTCTCTC  300

seq1  CCCACCTCCCTCCCCTTTTCTTCTGAGAAAATGGAGTGCCCCCTCCCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTCCCTCCCCTTTTCTTCTGAGAAAATGGAGTGCCCCCTCCCCCC  350

seq1  CGAAAACCCAGCACATCATGTCTCTGCAGGGCTAGGTGCTTCTTCCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAACCCAGCACATCATGTCTCTGCAGGGCTAGGTGCTTCTTCCCCCA  400

seq1  CTGAGGCCAGGCAAGACAGCTGAGTTGGGGACATATTCCACAGACAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCCAGGCAAGACAGCTGAGTTGGGGACATATTCCACAGACAAGCA  450

seq1  ACAGCTTTAGGGTGTAGTAGGATTGAGGACCCTGAAGGGGATAGGAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTTAGGGTGTAGTAGGATTGAGGACCCTGAAGGGGATAGGAACTC  500

seq1  CACAGGGAGACCAACAGAGTTAACTAACCTGGACTCTCAGAGACTGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGAGACCAACAGAGTTAACTAACCTGGACTCTCAGAGACTGAACC  550

seq1  ATTAACTAAAGAGCATACATGGGCTGGACCTACACCCCCCACCACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTAAAGAGCATACATGGGCTGGACCTACACCCCCCACCACACACA  600

seq1  TGTAGCAGAAGTCAGCTTGATCTTCATGTGAGTCCTGAATAACTGGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAGAAGTCAGCTTGATCTTCATGTGAGTCCTGAATAACTGGAAAG  650

seq1  AGCTCATTTTTAGTTCATAGAAACAATGTAGAATTATCTGTGCAAGTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATTTTTAGTTCATAGAAACAATGTAGAATTATCTGTGCAAGTAGA  700

seq1  AAACGTAATCCTCCTGACCCAAGACATTCTGTAGCAACTAAACGTCAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTAATCCTCCTGACCCAAGACATTCTGTAGCAACTAAACGTCAACC  750

seq1  TGACAAGGTAGATCCAGCCTTGATCTTCTGAGCTTCAAGTCTGTCTCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGGTAGATCCAGCCTTGATCTTCTGAGCTTCAAGTCTGTCTCTGA  800

seq1  CATAACCCAGGACTCGTTGCCATACACTGCCCTTGTCTTAGCTAGAG-TT  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CATAACCCAGGACTCGTTGCCATACACTGCCCTTGTCTTAGCTAGAGTTT  850

seq1  TTATTGCTGTGAAGAGACATCGTGACCACGAT-AAAGGAAAACATTTAAT  898
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTATTGCTGTGAAGAGACATCGTGACCACGATAAAAGGAAAACATTTAAT  900

seq1  TGGGAC-TGGC-TTACAGTTTCAGAGG-CTCAG-TCCATTGTCATCATGG  944
      |||||| |||| ||||||||||||||| ||||| || |||||||||||||
seq2  TGGGACTTGGCTTTACAGTTTCAGAGGCCTCAGTTCAATTGTCATCATGG  950

seq1  CA-GGAAGCATGACAGCATGC-AGGCAGACATGGTG-CTGGAGAAGGAGC  991
      || ||| |||||||||||||| |||||||||||||| |||||||||||||
seq2  CAGGGATGCATGACAGCATGCAAGGCAGACATGGTGCCTGGAGAAGGAGC  1000

seq1  TGAGAGTTCTACATCTTGATC-TGCAG-TCAGCAGAAAGAAACTACATGC  1039
      ||| || |||||||  ||||| ||||| |||||||||||||||||| |||
seq2  TGAAAG-TCTACATTCTGATCTTGCAGTTCAGCAGAAAGAAACTACTTGC  1049

seq1  CACAC-TGGGC--ATAGCTT--GAATAG-ATAAAACC-TCAAAGCCCAAC  1082
      ||||| |||||  |||||||   ||||| |||||||| |||||||| || 
seq2  CACACTTGGGCCAATAGCTTTGAAATAGAATAAAACCTTCAAAGCCAAAT  1099

seq1  CCACAGTGACACAC-TTCCTCCAACAGG-CCACACCTC--ATAATAGTGC  1128
      |||  |||||||||  || || |||||| |||  ||||  ||||||||||
seq2  CCAAGGTGACACACACTCTTCAAACAGGCCCAACCCTCAAATAATAGTGC  1149

seq1  CACTCCCTATAGCCAAGCA-TCCAAACACCT-GAGTCTAT-CAGAGCCAT  1175
      ||||| | ||||| | ||| ||||||||||| |||||||| ||||| |||
seq2  CACTCTCCATAGCTAGGCACTCCAAACACCTGGAGTCTATACAGAG-CAT  1198

seq1  TTC-CCACATTGTTC  1189
      ||| ||||| |||||
seq2  TTCTCCACAGTGTTC  1213