BAC Information

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BAC

Clone NameB6Ng01-198A06
Chromosome3 (Build37)
Map Location 89,146,522 - 89,342,627
singlet/doubletdoublet
Overlap geneAdam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3
Upstream geneSmg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4
Downstream geneLOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198A06.bB6Ng01-198A06.g
ACCGA019726GA019727
length1,0571,006
definitionB6Ng01-198A06.b B6Ng01-198A06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,341,575 - 89,342,627)(89,146,522 - 89,147,522)
sequence
gaattcaaatctgagagcctagtatagttgtacatgcattgaatcccagc
tattgagaggcataggcaagtggatctctgtgggtttgaggccagcctgg
tttatctagcaagttctggacaagcaggggcctacatagtgagaccctca
aaataaaatggaagttttgagtcccacctagtccagcatcccagagatga
ctagtgtcatgctatagttaggatgacggtttcatccttccatttgtcct
tgtaacaagccatctatccaggcttctccagtctctgctgtttggaacca
ggtaataccttgatttggtgagtattcctggcccctgtccattaggtatc
tatcaaatccttcccttggctgtgatgaccaaccaagtctccagactctg
ctacatgtattctgagaagcacctcaggtggaaagccttggctcacaggc
caggtagatcccaggtctccccatcaccaccttcccctgcctcttgttcc
tcatcaacatcccaccccagacaggctgtctctcttcaccaaaggccaga
gaagcttgtgtgaggtattcctgaggtacctcacagaagaagaaaggagt
caacattgactgagccggatcaccacaatctatttacatcacccttgcct
gcaccacaaaatgagcaaacgcagatgaagacttaggtactaaagtcata
tggtcaactagtggcacagaccaactctgaatgcagcagcagacccacac
ccagcatatctgactgaccagtgagaggagctggcccacaggtcccatag
cctcagaccctcaccttctgggcccaaaggccaaccatcagatatcaaga
catcaggagaagacatctaaagccatccctgctctttccacacttagaaa
ggaaacagttatagtggcatggctttgtggtccttgagagccctggagag
tcaacgggctttggacatagcagtttggctagtgagcagaagactggcac
cttcccaacacctagacctcacctctgagctatcttttcaagcttcattt
gatctac
gaattcttttttatcccctaaagcttctcagactgtcaggaatgcttcgg
aggatgggtagacaggcagtcctggagagggggagtctttatccgtgcca
ggggaaatgccagcaagctaatgcttttgttgttgtttttgtttttgtct
tttgagatagggtttctctgtgtagccctggctgtcctggaactcactct
gtagaccaggctggcctcaaactcagagagccgcctgtctctgcctccca
agtgctgggattaaaggcgtgtgccacccccgcccgactaagttaatacc
tttaatatgctggtcactagttagccactttcaggccctccaggatatgg
gtaccattattatgtccacttggaagaggaaacagcccaagaaggctaat
aaaatatcctgggaagtggcaaagacgggaaccgaggtctgtctgcttcc
aagtccagacttttcccttcagtgggctcgctttcccccttcatctcttc
cacaccagctcaccccatggccgtggcattttcttcgacattcctgtgct
cccaggagatccacgggctggcatcggtggccgatgcacacctgctccgt
agagagaagagcaaagatcacattctcaaagccttagagggactggggcc
tgcaggactgtgaggctcccctttacagacgtgaaaccgaagctgggtgg
ggaaacaagactgtttggcctgaagaatctggcttgttatgggtcagagg
ctgcttcccacccattctcaatcgcccaggctactcaccaggccaggacc
acaggcagtgccaggcagagccagaagaggctgggccacatcattgccca
ggtccaggtccacccagctgcagtttaactgtgtcccgtttggcttccag
gactccgagagccgatcttgggactgagcccaacagaaggctggcctcct
accccactggcacctgcagtgcccacacatgacattctttgggggcaggg
gagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89341575_89342627
seq2: B6Ng01-198A06.b_50_1106 (reverse)

seq1  GTAGATC-AATG-AGCTTGAAAAGATAGCTCAGAGGTGAGGTCTAGGTGT  48
      ||||||| |||| |||||||||||||||||||||||||||||||||||||
seq2  GTAGATCAAATGAAGCTTGAAAAGATAGCTCAGAGGTGAGGTCTAGGTGT  50

seq1  TGGG-AGGTGCCAGTCTTCTGCTCACTAGCCAAACTGCTATGTCCAAAGC  97
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGGTGCCAGTCTTCTGCTCACTAGCCAAACTGCTATGTCCAAAGC  100

seq1  CCGTTGACTCTCCAGGGCTCTCAAGGACCACAAAGCCATGCCACTATAAC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGACTCTCCAGGGCTCTCAAGGACCACAAAGCCATGCCACTATAAC  150

seq1  TGTTTCCTTTCTAAGTGTGGAAAGAGCAGGGATGGCTTTAGATGTCTTCT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCTTTCTAAGTGTGGAAAGAGCAGGGATGGCTTTAGATGTCTTCT  200

seq1  CCTGATGTCTTGATATCTGATGGTTGGCC-TTGGGCCCAGAAGGTGAGGG  246
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTGATGTCTTGATATCTGATGGTTGGCCTTTGGGCCCAGAAGGTGAGGG  250

seq1  TCTGAGGCTATGGGACCTGTGGGCCAGCTCCTCTCACTGGTCAGTCAGAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGCTATGGGACCTGTGGGCCAGCTCCTCTCACTGGTCAGTCAGAT  300

seq1  ATGCTGGGTGTGGGTCTGCTGCTGCATTCAGAGTTGGTCTGTGCCACTAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGGTGTGGGTCTGCTGCTGCATTCAGAGTTGGTCTGTGCCACTAG  350

seq1  TTGACCATATGACTTTAGTACCTAAGTCTTCATCTGCGTTTGCTCATTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCATATGACTTTAGTACCTAAGTCTTCATCTGCGTTTGCTCATTTT  400

seq1  GTGGTGCAGGCAAGGGTGATGTAAATAGATTGTGGTGATCCGGCTCAGTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCAGGCAAGGGTGATGTAAATAGATTGTGGTGATCCGGCTCAGTC  450

seq1  AATGTTGACTCCTTTCTTCTTCTGTGAGGTACCTCAGGAATACCTCACAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGACTCCTTTCTTCTTCTGTGAGGTACCTCAGGAATACCTCACAC  500

seq1  AAGCTTCTCTGGCCTTTGGTGAAGAGAGACAGCCTGTCTGGGGTGGGATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCTCTGGCCTTTGGTGAAGAGAGACAGCCTGTCTGGGGTGGGATG  550

seq1  TTGATGAGGAACAAGAGGCAGGGGAAGGTGGTGATGGGGAGACCTGGGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGAGGAACAAGAGGCAGGGGAAGGTGGTGATGGGGAGACCTGGGAT  600

seq1  CTACCTGGCCTGTGAGCCAAGGCTTTCCACCTGAGGTGCTTCTCAGAATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGGCCTGTGAGCCAAGGCTTTCCACCTGAGGTGCTTCTCAGAATA  650

seq1  CATGTAGCAGAGTCTGGAGACTTGGTTGGTCATCACAGCCAAGGGAAGGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGCAGAGTCTGGAGACTTGGTTGGTCATCACAGCCAAGGGAAGGA  700

seq1  TTTGATAGATACCTAATGGACAGGGGCCAGGAATACTCACCAAATCAAGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAGATACCTAATGGACAGGGGCCAGGAATACTCACCAAATCAAGG  750

seq1  TATTACCTGGTTCCAAACAGCAGAGACTGGAGAAGCCTGGATAGATGGCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCTGGTTCCAAACAGCAGAGACTGGAGAAGCCTGGATAGATGGCT  800

seq1  TGTTACAAGGACAAATGGAAGGATGAAACCGTCATCCTAACTATAGCATG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAAGGACAAATGGAAGGATGAAACCGTCATCCTAACTATAGCATG  850

seq1  ACACTAGTCATCTCTGGGATGCTGGACTAGGTGGGACTCAAAACTTCCAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGTCATCTCTGGGATGCTGGACTAGGTGGGACTCAAAACTTCCAT  900

seq1  TTTATTTTGAGGGTCTCACTATGTAGGCCCCTGCTTGTCCAGAACTTGCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTGAGGGTCTCACTATGTAGGCCCCTGCTTGTCCAGAACTTGCT  950

seq1  AGATAAACCAGGCTGGCCTCAAACCCACAGAGATCCACTTGCCTATGCCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAACCAGGCTGGCCTCAAACCCACAGAGATCCACTTGCCTATGCCT  1000

seq1  CTCAATAGCTGGGATTCAATGCATGTACAACTATACTAGGCTCTCAGATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATAGCTGGGATTCAATGCATGTACAACTATACTAGGCTCTCAGATT  1050

seq1  TGAATTC  1053
      |||||||
seq2  TGAATTC  1057

seq1: chr3_89146522_89147522
seq2: B6Ng01-198A06.g_65_1070

seq1  GAATTCTTTTTTATCCCCTAAAGCTTCTCAGACTGTCAGGAATGCTTCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTATCCCCTAAAGCTTCTCAGACTGTCAGGAATGCTTCGG  50

seq1  AGGATGGGTAGACAGGCAGTCCTGGAGAGGGGGAGTCTTTATCCGTGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGGTAGACAGGCAGTCCTGGAGAGGGGGAGTCTTTATCCGTGCCA  100

seq1  GGGGAAATGCCAGCAAGCTAATGCTTTTGTTGTTGTTTTTGTTTTTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAATGCCAGCAAGCTAATGCTTTTGTTGTTGTTTTTGTTTTTGTCT  150

seq1  TTTGAGATAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCT  200

seq1  GTAGACCAGGCTGGCCTCAAACTCAGAGAGCCGCCTGTCTCTGCCTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCAGGCTGGCCTCAAACTCAGAGAGCCGCCTGTCTCTGCCTCCCA  250

seq1  AGTGCTGGGATTAAAGGCGTGTGCCACCCCCGCCCGACTAAGTTAATACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGATTAAAGGCGTGTGCCACCCCCGCCCGACTAAGTTAATACC  300

seq1  TTTAATATGCTGGTCACTAGTTAGCCACTTTCAGGCCCTCCAGGATATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATGCTGGTCACTAGTTAGCCACTTTCAGGCCCTCCAGGATATGG  350

seq1  GTACCATTATTATGTCCACTTGGAAGAGGAAACAGCCCAAGAAGGCTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATTATTATGTCCACTTGGAAGAGGAAACAGCCCAAGAAGGCTAAT  400

seq1  AAAATATCCTGGGAAGTGGCAAAGACGGGAACCGAGGTCTGTCTGCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCCTGGGAAGTGGCAAAGACGGGAACCGAGGTCTGTCTGCTTCC  450

seq1  AAGTCCAGACTTTTCCCTTCAGTGGGCTCGCTTTCCCCCTTCATCTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCAGACTTTTCCCTTCAGTGGGCTCGCTTTCCCCCTTCATCTCTTC  500

seq1  CACACCAGCTCACCCCATGGCCGTGGCATTTTCTTCGACATTCCTGTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGCTCACCCCATGGCCGTGGCATTTTCTTCGACATTCCTGTGCT  550

seq1  CCCAGGAGATCCACGGGCTGGCATCGGTGGCCGATGCACACCTGCTCCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGATCCACGGGCTGGCATCGGTGGCCGATGCACACCTGCTCCGT  600

seq1  AGAGAGAAGAGCAAAGATCACATTCTCAAAGCCTTAGAGGGACTGGGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAGAGCAAAGATCACATTCTCAAAGCCTTAGAGGGACTGGGGCC  650

seq1  TGCAGGACTGTGAGGCTCCCCTTTACAGACGTGAAACCGAAGCTGGGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGACTGTGAGGCTCCCCTTTACAGACGTGAAACCGAAGCTGGGTGG  700

seq1  GGAAACAAGACTGTTTGGCCTGAAGAATCTGGCTTGTTATGGGTCAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAAGACTGTTTGGCCTGAAGAATCTGGCTTGTTATGGGTCAGAGG  750

seq1  CTGCTTCCCACCCATTCTCAATCGCCCAGGCTACTCACCAGGCCAGGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCCACCCATTCTCAATCGCCCAGGCTACTCACCAGGCCAGGACC  800

seq1  ACAGGCAGTGCCAGGCAGAGCCAGAAGAGGCTGGGCCACATCATTGCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAGTGCCAGGCAGAGCCAGAAGAGGCTGGGCCACATCATTGCCCA  850

seq1  GGTCCAGGTCCACCCAGCTGCAGTTTAACTGTGTCCCG-TTGGCTTCCAG  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGTCCAGGTCCACCCAGCTGCAGTTTAACTGTGTCCCGTTTGGCTTCCAG  900

seq1  GACCTCCGAGAGCCGATCTT-GGACTGAGCCCAACAG-AGGCTGG-CTCC  946
      || ||||||||||||||||| |||||||||||||||| ||||||| ||||
seq2  GA-CTCCGAGAGCCGATCTTGGGACTGAGCCCAACAGAAGGCTGGCCTCC  949

seq1  TACCCCACTGGCA-CTGCAGTTGCCCACACATGACA-TCTCTGGGGGTA-  993
      ||||||||||||| |||||| ||||||||||||||| ||| |||||| | 
seq2  TACCCCACTGGCACCTGCAG-TGCCCACACATGACATTCTTTGGGGGCAG  998

seq1  GGGAGAAA  1001
      ||||||||
seq2  GGGAGAAA  1006