BAC Information

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BAC

Clone NameB6Ng01-198F11
Chromosome3 (Build37)
Map Location 26,004,228 - 26,141,608
singlet/doubletdoublet
Overlap geneNlgn1
Upstream geneLOC100039592, LOC621017
Downstream geneLOC229152, Spata16, LOC665258, Ect2, Aadacl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198F11.bB6Ng01-198F11.g
ACCGA019963GA019964
length1,1871,188
definitionB6Ng01-198F11.b B6Ng01-198F11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,140,421 - 26,141,608)(26,004,228 - 26,005,403)
sequence
gaattcacatcttgcctggaatatatgaagccttgtttcaattttttaaa
atgtatttgttgtgtgtatcatgcctgacatggcatacaagaatctaact
agatgttcccctagaacaaagctttttctagaacctatcctgaagctgat
tctgcagtttttgagacatcttttagaacagtaaatatttcttgagctgt
aaaaaaaaaataggactttacttatagagtttatattacatgctgtactt
agtactgaagttttaaacatagtaaatttcttttattcctaaatacacac
ccatgggttgctataacctcattttccaaatgaagaaactgaagttcagc
aacattgaatatcagcctcaggtcacacagctgctcagtcacttgcctga
gaattcagtccaggcatgtttatgagatacgaaccagtctttgccttctg
gatgtgttccatatttggcctaagtggtgaagagattcatttgcacatgt
tctctggtacaaagaatataaaacagcttcatttcagtgtctaatagaca
aaaactgtatgacaaagtgcactttgcattcatcagttgcaagagctaat
gaaattgagattagctatccccaaactactgttcatgttggcctgttgaa
aatatatttagactgagtgatatgtgtgagctagtgtacatatgcaataa
tattgtaatagtggaggtttttttttaatgttgctaaagcttttttttaa
aaatgtttaccatgagctaggcaaatttccaagcatttaaattgcataag
ctcttttatgttaacaacaaaacatgtaacttttattactcacatagtat
aaagatatattaatcatataatacaaaatactaagatgaaattgaggcac
agagcgcctaaatattatcataaagtggaaaatttcagatcaaaatgaca
tcacggatgtggaagaatatatacagtcaatcagctggatcatagaataa
gaaatattcaacacatgaagtataagtgattcatttaaaaacacccaggc
cattcttgagatatatttgtacttttatcatttatgatatttctaactat
taaggcatgcttggagaaatcctgtaataagctcatggatcctcttacag
ttcaacaactggcaaggtttatctcacacaactctga

gaattcacatgccctgagctatcctttggcacaaatgacaatcaagatcc
agagaggtaaaatgactgaatcaaagtcactcagcaactcccaacagagc
caggtaagagagcctgagagccacaggtcttcctgtagatagtctatcca
tccacaggagccatagcacctttccctcaaatggacaatgtttacatcaa
acctcaggttccccaggtggaccaatcatttcctaaagttaataatgctt
ttattgtcagccctttggtgctttttggatgatcaatggaacaaaaaaat
gtaccagaccagcacatcctagggcatagggcatagactgagaggaagaa
acaccacgtgatcttctgcaggagtgaggtagaccaacagcaagctgtgt
attagtgctttccaaaacaattgaggcctccttcttcattcagctgaggt
tccctgggactcacactccctggggtaggaaatgcatttagaagctctat
taactctttcagcataattagtgcactgaagaagtcaattgttcaacgat
ctggaaggcagtgtgcagcttccctaaggcctgcatctgttatagggcag
gaaatatggtaacttgtcgtgtttactaattgggtcagttagtaactttc
ttttttctcttttttttttcagaagtaaagcaataaataattatcctagt
tgaatcatattatgcaaattgaaggcatcttttcaccgttgatacttcca
ggatatttctcaataaatctgcagtccccaaatgctgtaaccctcccgtg
acactacactgtgctaaatcaaccaattatattaacagtcttatgccatc
aacatggtcacctaacacatgtaaacttaaattcatctccctacaatttt
tgaagtgatttcagctctttgcttttccctttattgactgagaaatcttc
gtctacttccaaaatgccagcagcaagtgagcaaccctattggttctagc
tttctcagctgtttcactagcactttcaacagcacactgttcattaccgt
gtttccctacttgcattttcttcacaaaatataacagatttatgattcca
ggagttttccaagtccaactgtaacttttcaggcaggaggtatacttgtg
tgattgtgcctttcatcaaactctcttgtggtggagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_26140421_26141608
seq2: B6Ng01-198F11.b_44_1230 (reverse)

seq1  TCAGA---GTGTGAG--AAACACTG-CAGTTGTTGAAACTGGGAAGAGAG  44
      |||||   |||||||  ||||  || ||||||||| |||| | ||||| |
seq2  TCAGAGTTGTGTGAGATAAACCTTGCCAGTTGTTG-AACT-GTAAGAG-G  47

seq1  ACACAGGAGCTTATTACA-GATTTCTTCCAGCATTCCCTAATATGTAGAA  93
      |  || |||||||||||| ||||||| | ||||| || |||||  |||||
seq2  ATCCATGAGCTTATTACAGGATTTCTCCAAGCATGCCTTAATAGTTAGAA  97

seq1  ATTATCATAAAATGATTAAAAGTACAAATATAATCTCCAAAGAAATGGCC  143
      | |||||| |||||| ||||||||||||||| |||||  ||| |||||||
seq2  A-TATCAT-AAATGA-TAAAAGTACAAATAT-ATCTC--AAG-AATGGCC  140

seq1  TGGGTGTTTTT-AATGAATCACTTATACTTCATGTGTTGAATATTTCTTA  192
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTTTTTAAATGAATCACTTATACTTCATGTGTTGAATATTTCTTA  190

seq1  TTTCTATTGATCCAGCTGATTGACTGTATATATTCTTCCACATCCCTGAT  242
       ||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  -TTCTA-TGATCCAGCTGATTGACTGTATATATTCTTCCACATCCGTGAT  238

seq1  GTCATTTTGATCTG-AATTTTCCACTTTATGATAATATTTAGGCGCTCTG  291
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTCATTTTGATCTGAAATTTTCCACTTTATGATAATATTTAGGCGCTCTG  288

seq1  TGCCTCAATTTCATCTTAGTATTTTGTATTATATGATTAATATATCTTTA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAATTTCATCTTAGTATTTTGTATTATATGATTAATATATCTTTA  338

seq1  TACTATGTGAGTAAT-AAAGTTACATGTTTTGTTGTTAACATAAAAGAGC  390
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TACTATGTGAGTAATAAAAGTTACATGTTTTGTTGTTAACATAAAAGAGC  388

seq1  TTATGCAATTTAAATGCTTGGAAATTTGCCTAGCTCATGGTAAACATTTT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAATTTAAATGCTTGGAAATTTGCCTAGCTCATGGTAAACATTTT  438

seq1  T-AAAAAAAGCTTTAGCAACATTAAAAAAAAACCTCCACTATTACAATAT  489
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAGCTTTAGCAACATTAAAAAAAAACCTCCACTATTACAATAT  488

seq1  TATTGCATATGTACACTAGCTCACACATATCACTCAGTCTAAATATATTT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCATATGTACACTAGCTCACACATATCACTCAGTCTAAATATATTT  538

seq1  TCAACAGGCCAACATGAACAGTAGTTTGGGGATAGCTAATCTCAATTTCA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGGCCAACATGAACAGTAGTTTGGGGATAGCTAATCTCAATTTCA  588

seq1  TTAGCTCTTGCAACTGATGAATGCAAAGTGCACTTTGTCATACAGTTTTT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCTTGCAACTGATGAATGCAAAGTGCACTTTGTCATACAGTTTTT  638

seq1  GTCTATTAGACACTGAAATGAAGCTGTTTTATATTCTTTGTACCAGAGAA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTAGACACTGAAATGAAGCTGTTTTATATTCTTTGTACCAGAGAA  688

seq1  CATGTGCAAATGAATCTCTTCACCACTTAGGCCAAATATGGAACACATCC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCAAATGAATCTCTTCACCACTTAGGCCAAATATGGAACACATCC  738

seq1  AGAAGGCAAAGACTGGTTCGTATCTCATAAACATGCCTGGACTGAATTCT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCAAAGACTGGTTCGTATCTCATAAACATGCCTGGACTGAATTCT  788

seq1  CAGGCAAGTGACTGAGCAGCTGTGTGACCTGAGGCTGATATTCAATGTTG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAGTGACTGAGCAGCTGTGTGACCTGAGGCTGATATTCAATGTTG  838

seq1  CTGAACTTCAGTTTCTTCATTTGGAAAATGAGGTTATAGCAACCCATGGG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTTCAGTTTCTTCATTTGGAAAATGAGGTTATAGCAACCCATGGG  888

seq1  TGTGTATTTAGGAATAAAAGAAATTTACTATGTTTAAAACTTCAGTACTA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTTAGGAATAAAAGAAATTTACTATGTTTAAAACTTCAGTACTA  938

seq1  AGTACAGCATGTAATATAAACTCTATAAGTAAAGTCCTATTTTTTTTTTA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGCATGTAATATAAACTCTATAAGTAAAGTCCTATTTTTTTTTTA  988

seq1  CAGCTCAAGAAATATTTACTGTTCTAAAAGATGTCTCAAAAACTGCAGAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAAGAAATATTTACTGTTCTAAAAGATGTCTCAAAAACTGCAGAA  1038

seq1  TCAGCTTCAGGATAGGTTCTAGAAAAAGCTTTGTTCTAGGGGAACATCTA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTCAGGATAGGTTCTAGAAAAAGCTTTGTTCTAGGGGAACATCTA  1088

seq1  GTTAGATTCTTGTATGCCATGTCAGGCATGATACACACAACAAATACATT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATTCTTGTATGCCATGTCAGGCATGATACACACAACAAATACATT  1138

seq1  TTAAAAAATTGAAACAAGGCTTCATATATTCCAGGCAAGATGTGAATTC  1188
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATTGAAACAAGGCTTCATATATTCCAGGCAAGATGTGAATTC  1187


seq1: chr3_26004228_26005403
seq2: B6Ng01-198F11.g_65_1252

seq1  GAATTCACATGCCCTGAGCTATCCTTTGGCACAAATGACAATCAAGATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGCCCTGAGCTATCCTTTGGCACAAATGACAATCAAGATCC  50

seq1  AGAGAGGTAAAATGACTGAATCAAAGTCACTCAGCAACTCCCAACAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGTAAAATGACTGAATCAAAGTCACTCAGCAACTCCCAACAGAGC  100

seq1  CAGGTAAGAGAGCCTGAGAGCCACAGGTCTTCCTGTAGATAGTCTATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAGAGAGCCTGAGAGCCACAGGTCTTCCTGTAGATAGTCTATCCA  150

seq1  TCCACAGGAGCCATAGCACCTTTCCCTCAAATGGACAATGTTTACATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGGAGCCATAGCACCTTTCCCTCAAATGGACAATGTTTACATCAA  200

seq1  ACCTCAGGTTCCCCAGGTGGACCAATCATTTCCTAAAGTTAATAATGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGGTTCCCCAGGTGGACCAATCATTTCCTAAAGTTAATAATGCTT  250

seq1  TTATTGTCAGCCCTTTGGTGCTTTTTGGATGATCAATGGAACAAAAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTCAGCCCTTTGGTGCTTTTTGGATGATCAATGGAACAAAAAAAT  300

seq1  GTACCAGACCAGCACATCCTAGGGCATAGGGCATAGACTGAGAGGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGACCAGCACATCCTAGGGCATAGGGCATAGACTGAGAGGAAGAA  350

seq1  ACACCACGTGATCTTCTGCAGGAGTGAGGTAGACCAACAGCAAGCTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACGTGATCTTCTGCAGGAGTGAGGTAGACCAACAGCAAGCTGTGT  400

seq1  ATTAGTGCTTTCCAAAACAATTGAGGCCTCCTTCTTCATTCAGCTGAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGCTTTCCAAAACAATTGAGGCCTCCTTCTTCATTCAGCTGAGGT  450

seq1  TCCCTGGGACTCACACTCCCTGGGGTAGGAAATGCATTTAGAAGCTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGACTCACACTCCCTGGGGTAGGAAATGCATTTAGAAGCTCTAT  500

seq1  TAACTCTTTCAGCATAATTAGTGCACTGAAGAAGTCAATTGTTCAACGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTTTCAGCATAATTAGTGCACTGAAGAAGTCAATTGTTCAACGAT  550

seq1  CTGGAAGGCAGTGTGCAGCTTCCCTAAGGCCTGCATCTGTTATAGGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGGCAGTGTGCAGCTTCCCTAAGGCCTGCATCTGTTATAGGGCAG  600

seq1  GAAATATGGTAACTTGTCGTGTTTACTAATTGGGTCAGTTAGTAACTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGGTAACTTGTCGTGTTTACTAATTGGGTCAGTTAGTAACTTTC  650

seq1  TTTTTTCTCTTTTTTTTTTCAGAAGTAAAGCAATAAATAATTATCCTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTCTTTTTTTTTTCAGAAGTAAAGCAATAAATAATTATCCTAGT  700

seq1  TGAATCATATTATGCAAATTGAAGGCATCTTTTCACCGTTGATACTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCATATTATGCAAATTGAAGGCATCTTTTCACCGTTGATACTTCCA  750

seq1  GGATATTTCTCAATAAATCTGCAGTCCCCAAATGCTGTAACCCTCCCGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTTCTCAATAAATCTGCAGTCCCCAAATGCTGTAACCCTCCCGTG  800

seq1  ACACTACACTGTGCTAAATCAACCAATTATATTAACAGTCTTATGCCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACACTGTGCTAAATCAACCAATTATATTAACAGTCTTATGCCATC  850

seq1  AACATGGTCACCTAACACATGTAAACTTAAATTCATCTCCCTACAATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGTCACCTAACACATGTAAACTTAAATTCATCTCCCTACAATTTT  900

seq1  TGAAGTGATTTCAGCTCTTTGCTTTTCCCTTTATTGACTGAGAAATCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGATTTCAGCTCTTTGCTTTTCCCTTTATTGACTGAGAAATCTTC  950

seq1  GTCTACTTCCAAAATGCCAGCAGCAAAGTGAGCAA-CCTATT-GTTCTAG  998
      |||||||||||||||||||||||| |||||||||| |||||| |||||||
seq2  GTCTACTTCCAAAATGCCAGCAGC-AAGTGAGCAACCCTATTGGTTCTAG  999

seq1  CTTTCTCAGCTGTTTCCACTAGCACTTTCAACAGCACACTGTTCCATTTA  1048
      ||||||||||||||| ||||||||||||||||||||||||||||   |||
seq2  CTTTCTCAGCTGTTT-CACTAGCACTTTCAACAGCACACTGTTC--ATTA  1046

seq1  CCGTG-TTCCCTACTTGCCATTTTTCTTCCACAAATAT-ACAGATTTTAT  1096
      ||||| ||||||||||||   ||||||||   |||||| ||||| |||||
seq2  CCGTGTTTCCCTACTTGC--ATTTTCTTCACAAAATATAACAGA-TTTAT  1093

seq1  GATTTCAAGGAGTTTTCCAAGTCCCACTTGTACTTTTCCAGCAAGAGGTA  1146
      || ||| ||||||||||||||||| |||   |||||||  ||| ||||||
seq2  GA-TTCCAGGAGTTTTCCAAGTCCAACTGTAACTTTTCAGGCAGGAGGTA  1142

seq1  TAC---TGTGATTG---CTT---TCAAACTCT-------TGGAGTC  1176
      |||   ||||||||   |||   |||||||||       |||||||
seq2  TACTTGTGTGATTGTGCCTTTCATCAAACTCTCTTGTGGTGGAGTC  1188


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