BAC Information

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BAC

Clone NameB6Ng01-198G16
Chromosome3 (Build37)
Map Location 77,867,485 - 77,981,287
singlet/doubletdoublet
Overlap geneLOC667526, LOC626479
Upstream geneDnmt3a-ps1, EG626461
Downstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198G16.bB6Ng01-198G16.g
ACCGA020020GA020021
length9971,082
definitionB6Ng01-198G16.b B6Ng01-198G16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,867,485 - 77,868,316)(77,980,211 - 77,981,287)
sequence
gaattcattccacacaagtcatttccaaactctgggcccaacctaccttc
attcacattctttcttcttctccaacatgctgtgtccataccagatagac
acagaattaacaagagaagtcaaagaggtcaaaaaagagaaaaaacaaaa
caaaacaaaacaatgaaattaggggaaaaaggacaaagagaacaaatgcc
tgagtaacatccaagaaaacacaagacatcatagaaatgatcgaaacaat
ccaagacatgaaaatagaattcaaaaaaacagatgaacacataaagctgg
tgaaaatcatcaagtgacctttttgggtaaacatgaaaaatgggaataaa
gtctctgaataatgaggaataagaataatgaggaataagaggtataaaaa
catgaaaataaatgtaaggatgtctgaaaagtttccaaagaatcacacta
ttaactatttacttataatacacataatttgcctatgatatatacaagtt
atatctatctatacctctaactctatatctatgtatgcatgtgcgtgtat
atatatacacacacacacatataatttttcaaatgaaaattttccatctt
agttgacagtgctccttctatgagtcaaagactatctaacaaaaatccca
acacttggcactagaagccttcttttaagtcattagtcagatttattcaa
gaaatgcctaaaataatacaagacatagttttacctttgtttcacttttt
actgtataaagtacattcctattgcagttcagaagcagggcccagagacc
tgagctagaactgacacgaaagcttcctctcagagtattagatttcatga
taccagaaaggcaccaaagcttctaaaggagggaaacaaccaaaacacct
atgcacatatgttacctataaactaaatccatgtccagtatagcatgata
aaacagaaccattcaccactgacactcatacctttggcagtaaccaa

gaattctcctcttgagtacataccatatactctatgaagattctcattct
ttttcttttagtgaagtgcttttgacaagttttccttctctggaattctt
tccgtgatggaaatggatctgttttattccaggaaaatgctattagtact
aatagtcatacatcagccatgctgtaggtgttgaggataacaaaatgatg
cccgtggacataaagagatgaaagaatcaaccactgacttagagaatttt
aatatgtatctttaaaataacaacgtatcattatactgatagattcatag
gcatattaatcccttctcatttaagaagcttgtatttgtgacagagagtt
ggtaattaacatagagaccaacaacctcatcaaagtaaagaaaataagca
actatggaatgtttggctctaagtggaatccatccatttgtctgtatatc
tgtctgtctatatgtatgtctatattgttacatatatttttagacattcc
tcccaaaattcagggcatctttgagaagacaggaaacaatgagtctaaga
gacagaggcagtggatgattataagaaaacagtatacatacgaagttacc
ctaattttgacagtgtgccaaagaccagtgaaagcataagccagaccaaa
tcctagcatgatgaggagagttggacacaaaatcttagctcaacgggtag
gttggttatactccagttgaaaatgaaacctccaagagtatttgagtaaa
caaattggttttaatgggtttaaataaaaagggaagagacataaaattga
atggccaggcaggggcagtagaactagaaagaggtggaagaataaataaa
tatgttcaaaacatgcataaaattatcagataatgaattaattttaaaag
ggaaactataataagtgcttgagatttattaatttgtaaaaacagtattt
tatgcgactttctagctcagtgtaatagcaattgtctacagcatacttga
ctctaatgtgttttctagtctcagttgttacccaaaaccacttcaagtag
cctatttatgtgatcgtgttgcctcacctgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_77867485_77868316
seq2: B6Ng01-198G16.b_46_877

seq1  GAATTCATTCCACACAAGTCATTTCCAAACTCTGGGCCCAACCTACCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCACACAAGTCATTTCCAAACTCTGGGCCCAACCTACCTTC  50

seq1  ATTCACATTCTTTCTTCTTCTCCAACATGCTGTGTCCATACCAGATAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACATTCTTTCTTCTTCTCCAACATGCTGTGTCCATACCAGATAGAC  100

seq1  ACAGAATTAACAAGAGAAGTCAAAGAGGTCAAAAAAGAGAAAAAACAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTAACAAGAGAAGTCAAAGAGGTCAAAAAAGAGAAAAAACAAAA  150

seq1  CAAAACAAAACAATGAAATTAGGGGAAAAAGGACAAAGAGAACAAATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAACAATGAAATTAGGGGAAAAAGGACAAAGAGAACAAATGCC  200

seq1  TGAGTAACATCCAAGAAAACACAAGACATCATAGAAATGATCGAAACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAACATCCAAGAAAACACAAGACATCATAGAAATGATCGAAACAAT  250

seq1  CCAAGACATGAAAATAGAATTCAAAAAAACAGATGAACACATAAAGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACATGAAAATAGAATTCAAAAAAACAGATGAACACATAAAGCTGG  300

seq1  TGAAAATCATCAAGTGACCTTTTTGGGTAAACATGAAAAATGGGAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCATCAAGTGACCTTTTTGGGTAAACATGAAAAATGGGAATAAA  350

seq1  GTCTCTGAATAATGAGGAATAAGAATAATGAGGAATAAGAGGTATAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGAATAATGAGGAATAAGAATAATGAGGAATAAGAGGTATAAAAA  400

seq1  CATGAAAATAAATGTAAGGATGTCTGAAAAGTTTCCAAAGAATCACACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAATAAATGTAAGGATGTCTGAAAAGTTTCCAAAGAATCACACTA  450

seq1  TTAACTATTTACTTATAATACACATAATTTGCCTATGATATATACAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTATTTACTTATAATACACATAATTTGCCTATGATATATACAAGTT  500

seq1  ATATCTATCTATACCTCTAACTCTATATCTATGTATGCATGTGCGTGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTATCTATACCTCTAACTCTATATCTATGTATGCATGTGCGTGTAT  550

seq1  ATATATACACACACACACATATAATTTTTCAAATGAAAATTTTCCATCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACACACACACACATATAATTTTTCAAATGAAAATTTTCCATCTT  600

seq1  AGTTGACAGTGCTCCTTCTATGAGTCAAAGACTATCTAACAAAAATCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACAGTGCTCCTTCTATGAGTCAAAGACTATCTAACAAAAATCCCA  650

seq1  ACACTTGGCACTAGAAGCCTTCTTTTAAGTCATTAGTCAGATTTATTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGGCACTAGAAGCCTTCTTTTAAGTCATTAGTCAGATTTATTCAA  700

seq1  GAAATGCCTAAAATAATACAAGACATAGTTTTACCTTTGTTTCACTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCCTAAAATAATACAAGACATAGTTTTACCTTTGTTTCACTTTTT  750

seq1  ACTGTATAAAGTACATTCCTATTGCAGTTCAGAAGCAGGGCCCAGAGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATAAAGTACATTCCTATTGCAGTTCAGAAGCAGGGCCCAGAGACC  800

seq1  TGAGCTAGAACTGACACGAAAGCTTCCTCTCA  832
      ||||||||||||||||||||||||||||||||
seq2  TGAGCTAGAACTGACACGAAAGCTTCCTCTCA  832


seq1: chr3_77980211_77981287
seq2: B6Ng01-198G16.g_67_1148 (reverse)

seq1  CACA-GTGAGGGCACACGATCAACAATAAATA-GCTACTTGAAGTG---T  45
      |||| ||||||  |||||||||   ||||||| |||||||||||||   |
seq2  CACAGGTGAGGCAACACGATCA--CATAAATAGGCTACTTGAAGTGGTTT  48

seq1  TTGGTTACAACTGAGACTAG-AAACACATTAGAGTCAAGTATGCTGTAGA  94
      | ||| |||||||||||||| |||||||||||||||||||||||||||||
seq2  TGGGTAACAACTGAGACTAGAAAACACATTAGAGTCAAGTATGCTGTAGA  98

seq1  CAATTGCTATTTACACTGAGCTAG-AAGTCGCATAAAATACTGTTTTTAC  143
      ||||||||| |||||||||||||| |||||||||||||||||||||||||
seq2  CAATTGCTA-TTACACTGAGCTAGAAAGTCGCATAAAATACTGTTTTTAC  147

seq1  AAATT-ATAAATCTCAAGCACTTATTATAGTTTCCCTTTTAAAATTAATT  192
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATAAATCTCAAGCACTTATTATAGTTTCCCTTTTAAAATTAATT  197

seq1  CATTATCTGATAATTTTATGCATGTTTTGAACATATTTATTTATTCTTCC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCTGATAATTTTATGCATGTTTTGAACATATTTATTTATTCTTCC  247

seq1  ACCTCTTTCTAGTTCTACTGCCCCTGCCTGGCCATTCAATTTTATGTCTC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTTCTAGTTCTACTGCCCCTGCCTGGCCATTCAATTTTATGTCTC  297

seq1  TTCCCTTTTTATTTAAACCCATTAAAACCAATTTGTTTACTCAAATACTC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTTTATTTAAACCCATTAAAACCAATTTGTTTACTCAAATACTC  347

seq1  TTGGAGGTTTCATTTTCAACTGGAGTATAACCAACCTACCCGTTGAGCTA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGTTTCATTTTCAACTGGAGTATAACCAACCTACCCGTTGAGCTA  397

seq1  AGATTTTGTGTCCAACTCTCCTCATCATGCTAGGATTTGGTCTGGCTTAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGTGTCCAACTCTCCTCATCATGCTAGGATTTGGTCTGGCTTAT  447

seq1  GCTTTCACTGGTCTTTGGCACACTGTCAAAATTAGGGTAACTTCGTATGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCACTGGTCTTTGGCACACTGTCAAAATTAGGGTAACTTCGTATGT  497

seq1  ATACTGTTTTCTTATAATCATCCACTGCCTCTGTCTCTTAGACTCATTGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTTTTCTTATAATCATCCACTGCCTCTGTCTCTTAGACTCATTGT  547

seq1  TTCCTGTCTTCTCAAAGATGCCCTGAATTTTGGGAGGAATGTCTAAAAAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCTTCTCAAAGATGCCCTGAATTTTGGGAGGAATGTCTAAAAAT  597

seq1  ATATGTAACAATATAGACATACATATAGACAGACAGATATACAGACAAAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAACAATATAGACATACATATAGACAGACAGATATACAGACAAAT  647

seq1  GGATGGATTCCACTTAGAGCCAAACATTCCATAGTTGCTTATTTTCTTTA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGATTCCACTTAGAGCCAAACATTCCATAGTTGCTTATTTTCTTTA  697

seq1  CTTTGATGAGGTTGTTGGTCTCTATGTTAATTACCAACTCTCTGTCACAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATGAGGTTGTTGGTCTCTATGTTAATTACCAACTCTCTGTCACAA  747

seq1  ATACAAGCTTCTTAAATGAGAAGGGATTAATATGCCTATGAATCTATCAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGCTTCTTAAATGAGAAGGGATTAATATGCCTATGAATCTATCAG  797

seq1  TATAATGATACGTTGTTATTTTAAAGATACATATTAAAATTCTCTAAGTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGATACGTTGTTATTTTAAAGATACATATTAAAATTCTCTAAGTC  847

seq1  AGTGGTTGATTCTTTCATCTCTTTATGTCCACGGGCATCATTTTGTTATC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTGATTCTTTCATCTCTTTATGTCCACGGGCATCATTTTGTTATC  897

seq1  CTCAACACCTACAGCATGGCTGATGTATGACTATTAGTACTAATAGCATT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACACCTACAGCATGGCTGATGTATGACTATTAGTACTAATAGCATT  947

seq1  TTCCTGGAATAAAACAGATCCATTTCCATCACGGAAAGAATTCCAGAGAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGAATAAAACAGATCCATTTCCATCACGGAAAGAATTCCAGAGAA  997

seq1  GGAAAACTTGTCAAAAGCACTTCACTAAAAGAAAAAGAATGAGAATCTTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACTTGTCAAAAGCACTTCACTAAAAGAAAAAGAATGAGAATCTTC  1047

seq1  ATAGAGTATATGGTATGTACTCAAGAGGAGAATTC  1077
      |||||||||||||||||||||||||||||||||||
seq2  ATAGAGTATATGGTATGTACTCAAGAGGAGAATTC  1082


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