BAC Information

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BAC

Clone NameB6Ng01-198I01
Chromosome3 (Build37)
Map Location 121,657,360 - 121,836,508
singlet/doubletdoublet
Overlap geneArhgap29, Abca4
Upstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298
Downstream geneEG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198I01.bB6Ng01-198I01.g
ACCGA020082GA020083
length2641,064
definitionB6Ng01-198I01.b B6Ng01-198I01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,836,245 - 121,836,508)(121,657,360 - 121,658,412)
sequence
ataggaattttggttctcgccgtttcaaagtccaacagttactaactgag
agcttacgagtgtttttatcttgatctcaaaggggtcaggaggctggagc
tggcgtctggcttatattaactgtcagcattatctctaaggactctgctg
gccatcactcatagagacaagcctggatcagaagcctggtagagaggagg
gcaactgtggtgacatgacagaaaaaaggagaccaggggagtaggaggtg
aattttgggggggg
gaattcatgttgccgtctcattgaatttgggcaaagggttacctctctat
gaaaaagagaattcagatttagatatgaaggaatagttaaaaggaataaa
acccaacacaagatttaggtcattttcttccgtgatttctttaggcagtt
tgccagaagtgcctacttagaaatgcttcaagtactgtgcaagtaaggag
ccctgacacttaagcctcaatacccatacagagcttgtagctctggtctc
atgattggagaagcttgagagtgaatgccagtaagctaggcccagataga
aaaggtttcaatccccaaattagcagaaagtggaacttctgctgagaaga
aaacactggcacatatatattggctgtttagttccatttctcttaaaata
gagcacagataccagcatctctccattgtaaaggctgcttttacacagaa
agctttgtggaagggttttttttttttttaaatcttgtgacactgagaaa
atactcagcattcactgagaaaattcaacgacattccatcatgctagata
gagccctgtagaactttttcatttattgagtaacaatagacaatatgaaa
tagagcccaaggcataaagttatggatgcattgaaagaaagaagtatgtt
gaatgtcctatgggaaagtagagggatggttaattttagtggaaagaatg
aacagattttcttagaagaagtattttctgtgagtttgaagacccggaga
tttgagttttcagtacatacaaagtattatgacccttctgggcagaattt
gaaggttatctccactacataccaggatgccgccgatccagttctgcttt
ggagcattcagcgctggtttcctttgcttgagtaggttgttggttttgtt
ttttcaatttcccactcacctccctgtgtgatcacgagtcacaaatattt
gtgggataaagaaaccagggctcagtcagcagatcattctgttataataa
aggatttcagtggagtattaagattttattggttcctgtttataactggg
atgaataagggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_121836245_121836508
seq2: B6Ng01-198I01.b_44_307 (reverse)

seq1  CCCCCCCCAAAATTCACCTCCTACTCCCCTGGTCTCCTTTTTTCTGTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCAAAATTCACCTCCTACTCCCCTGGTCTCCTTTTTTCTGTCAT  50

seq1  GTCACCACAGTTGCCCTCCTCTCTACCAGGCTTCTGATCCAGGCTTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCACAGTTGCCCTCCTCTCTACCAGGCTTCTGATCCAGGCTTGTCT  100

seq1  CTATGAGTGATGGCCAGCAGAGTCCTTAGAGATAATGCTGACAGTTAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGTGATGGCCAGCAGAGTCCTTAGAGATAATGCTGACAGTTAATA  150

seq1  TAAGCCAGACGCCAGCTCCAGCCTCCTGACCCCTTTGAGATCAAGATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAGACGCCAGCTCCAGCCTCCTGACCCCTTTGAGATCAAGATAAA  200

seq1  AACACTCGTAAGCTCTCAGTTAGTAACTGTTGGACTTTGAAACGGCGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCGTAAGCTCTCAGTTAGTAACTGTTGGACTTTGAAACGGCGAGA  250

seq1  ACCAAAATTCCTAT  264
      ||||||||||||||
seq2  ACCAAAATTCCTAT  264

seq1: chr3_121657360_121658412
seq2: B6Ng01-198I01.g_70_1133

seq1  GAATTCATGTTGCCGTCTCATTGAATTTGGGCAAAGGGTTACCTCTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTGCCGTCTCATTGAATTTGGGCAAAGGGTTACCTCTCTAT  50

seq1  GAAAAAGAGAATTCAGATTTAGATATGAAGGAATAGTTAAAAGGAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAGAATTCAGATTTAGATATGAAGGAATAGTTAAAAGGAATAAA  100

seq1  ACCCAACACAAGATTTAGGTCATTTTCTTCCGTGATTTCTTTAGGCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACACAAGATTTAGGTCATTTTCTTCCGTGATTTCTTTAGGCAGTT  150

seq1  TGCCAGAAGTGCCTACTTAGAAATGCTTCAAGTACTGTGCAAGTAAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAAGTGCCTACTTAGAAATGCTTCAAGTACTGTGCAAGTAAGGAG  200

seq1  CCCTGACACTTAAGCCTCAATACCCATACAGAGCTTGTAGCTCTGGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACACTTAAGCCTCAATACCCATACAGAGCTTGTAGCTCTGGTCTC  250

seq1  ATGATTGGAGAAGCTTGAGAGTGAATGCCAGTAAGCTAGGCCCAGATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTGGAGAAGCTTGAGAGTGAATGCCAGTAAGCTAGGCCCAGATAGA  300

seq1  AAAGGTTTCAATCCCCAAATTAGCAGAAAGTGGAACTTCTGCTGAGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTTCAATCCCCAAATTAGCAGAAAGTGGAACTTCTGCTGAGAAGA  350

seq1  AAACACTGGCACATATATATTGGCTGTTTAGTTCCATTTCTCTTAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGGCACATATATATTGGCTGTTTAGTTCCATTTCTCTTAAAATA  400

seq1  GAGCACAGATACCAGCATCTCTCCATTGTAAAGGCTGCTTTTACACAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAGATACCAGCATCTCTCCATTGTAAAGGCTGCTTTTACACAGAA  450

seq1  AGCTTTGTGGAAGGGTTTTTTTTTTTTTTAAATCTTGTGACACTGAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGTGGAAGGGTTTTTTTTTTTTTTAAATCTTGTGACACTGAGAAA  500

seq1  ATACTCAGCATTCACTGAGAAAATTCAACGACATTCCATCATGCTAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCAGCATTCACTGAGAAAATTCAACGACATTCCATCATGCTAGATA  550

seq1  GAGCCCTGTAGAACTTTTTCATTTATTGAGTAACAATAGACAATATGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTGTAGAACTTTTTCATTTATTGAGTAACAATAGACAATATGAAA  600

seq1  TAGAGCCCAAGGCATAAAGTTATGGATGCATTGAAAGAAAGAAGTATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCCAAGGCATAAAGTTATGGATGCATTGAAAGAAAGAAGTATGTT  650

seq1  GAATGTCCTATGGGAAAGTAGAGGGATGGTTAATTTTAGTGGAAAGAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCCTATGGGAAAGTAGAGGGATGGTTAATTTTAGTGGAAAGAATG  700

seq1  AACAGA-TTTCTTAGAAGAAGTATTTTCTGTGAGTTTGAAGACCCGGAGA  749
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATTTTCTTAGAAGAAGTATTTTCTGTGAGTTTGAAGACCCGGAGA  750

seq1  TTTGAGTTTTCAGTACATACAAAGTATTAGGACCCTTCTGGGCAGAA-TT  798
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  TTTGAGTTTTCAGTACATACAAAGTATTATGACCCTTCTGGGCAGAATTT  800

seq1  GAAGGTTATCTCCACTACATACCAGGATGCCGCCGATCCAGTTCTGCTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTATCTCCACTACATACCAGGATGCCGCCGATCCAGTTCTGCTTT  850

seq1  GGAGCATTCAGCGCT-GTTTCCTTTGCTTGAGTAGGTTGTTGG-TTTGTT  896
      ||||||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  GGAGCATTCAGCGCTGGTTTCCTTTGCTTGAGTAGGTTGTTGGTTTTGTT  900

seq1  TTTTCAATTTCCCACTCACCT-CCTGTGTGATCACGAGTCACAAATATTT  945
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTTCAATTTCCCACTCACCTCCCTGTGTGATCACGAGTCACAAATATTT  950

seq1  GT-GGATAAAGAAACAAGG--CCAGTCAGCAGATCATTCTGTTATAATAA  992
      || |||||||||||| |||   ||||||||||||||||||||||||||||
seq2  GTGGGATAAAGAAACCAGGGCTCAGTCAGCAGATCATTCTGTTATAATAA  1000

seq1  A-GATTTCAGTGGAGTATTAAGATTTTATT-GTTTCTGTTTATTACTGGG  1040
      | |||||||||||||||||||||||||||| ||| |||||||| ||||||
seq2  AGGATTTCAGTGGAGTATTAAGATTTTATTGGTTCCTGTTTATAACTGGG  1050

seq1  ATG-ATAAGGAAAT  1053
      ||| |||||| |||
seq2  ATGAATAAGGGAAT  1064