BAC Information

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BAC

Clone NameB6Ng01-198J01
Chromosome3 (Build37)
Map Location 71,759,019 - 71,919,455
singlet/doubletdoublet
Overlap geneLOC100041459
Upstream geneEG667377, LOC667385
Downstream gene2010204N08Rik, Slitrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198J01.bB6Ng01-198J01.g
ACCGA020127GA020128
length1,0821,114
definitionB6Ng01-198J01.b B6Ng01-198J01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,918,374 - 71,919,455)(71,759,019 - 71,760,132)
sequence
gaattcccaagcacagggaaatgtggactatttttgctgtagaggaatta
tatacagtacacacttaaaaatagtaattttagcagctgcttgccaattg
ccttgagtggtcatttttgtgataggtgagtgtgaaatttaaattgcagg
gaaacaacgtgcaaattactttttgccaagtctgatcgtgaaaggattaa
atgacacaggatgataactcaaacaacacggagatttaaaaaatgctctt
aagtgaaagtacatggaaaattaaggtaattgggagagaggataatccat
ttaaattttttgggaatcttggcacaaatgtcagttgtcagagtatattg
attaaaaaaataaaagatatgttttttttctctaaatcaaaagtgaagga
tatataactatactgattaatatgtgcaagggctaccagtcagaaatttt
gtgcatgacttatttgatataaaatttaagtagcagcttctcttaggctg
caatataaggaaaatgaaattgagttacagatgcaaaaatgtaaacctta
ctttttacagacatctgtggtggtaagtcagaggaggattgtaacaaaga
acaaatttgtgtgtaagaaaacattagcaaaagtcttccaggatacaagt
atcttggaagtatttcactgcccttgatatttagaaggaatcaaaccaaa
ctggctgctgtttttcactgtagccacagaaatttaagcttcccttcggt
aagagagcttttgttagtaagcaaagtcttgttatgggacagttgtgaaa
catctgcaggtgtgattctgacagatgaatgactacactacttatgtgac
attaactttggtactcaatacagcattgactagatattgtttttcataga
gtctgaagtttctaaaccaagataactgaccctcactgcttgtctttcct
tctgtagatatccaagcatttcattgcaaaaccagatttccaagtcttag
gaaaggggataaagagagtcttataggaaatgcatcagagttagaaaatg
ccataaagggtatttaggtatcagttaaatgg

gaattccttcctctattcctgccaagcctttgatcactggaatttttttg
atttacagagaaccacttagagacaagaactttaatatataaacacacag
attcctgatcaaaacatcagaaccactcccctactcccctatatgtcata
ggatgcattatgtaaaggagatcgttttagatttactctcgggaaattgg
atgttattgcaaagttttaaaaagagaaattcaaatctgtgaatttttgg
atacattaccatgaaagttgtgttgtaagtactggcatggatataatgtt
ctgagaagcattgggatacattaatattgtgaaataattggaaccattgt
gacagattgattagtcagtaaagtggttgcttgctatgcaagctcaggaa
cctgagatttgttgccagaacccattctacaagccaggcatggtggtgta
agtttgtagtctgagctttggagaggtagagacatgtgtaaccctgaggc
ttgctatattgtcagcatagtctgtcatggatcccactaaaacttcattt
atgtgaccaagtaagagtcatctaaaaaaaaacaataaagttaatataag
caggggaaacttggcacagtattcatatacacatgctatacatatgcagg
ctgttttgtaagtcatgatgggaatatggcactgcttattttaagacaac
ttgtggatctcaaactatagctattcttttataatgtatcatatttaagc
catcctgacacccaatattttaagcatttttaaattttgtgcacttagtt
attaagtgaaaatttagatatgtctacaagtcagtattaaagagagattg
aaaacttaagtaattttatggaattgatagtttttaataatgatttccat
gtcttagagaaatatatactacaagaaatatttaagactgaaaaatacaa
tgcagtatttagggctcagtagtgattttgtttcaatatctcttatctac
ttataggtaaataaatatgagttgtttacattttctattttgatgtctaa
agagataatattttcatagttaatatcttgttggttctcaactaaaacat
taagagttgttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_71918374_71919455
seq2: B6Ng01-198J01.b_46_1127 (reverse)

seq1  CCATTTAAACTTGATAC--TAATACCTTTATTGGCATTTTCTACCTCCTG  48
      ||||||||   ||||||   |||||| ||  |||||||||||| || |||
seq2  CCATTTAA--CTGATACCTAAATACCCTTTATGGCATTTTCTAACT-CTG  47

seq1  ATGCATTTCTTATAAGACTCTCTTTATCCCCTTTCCTAAGACTTGGAAAT  98
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTCCTATAAGACTCTCTTTATCCCCTTTCCTAAGACTTGGAAAT  97

seq1  CTGGTTTTGCAATGAAATGCTTGGATATCTACAGAAGGAAAGACAAGCAG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTGCAATGAAATGCTTGGATATCTACAGAAGGAAAGACAAGCAG  147

seq1  TGAGGGTCAGTTATCTTGGTTTAGAAACTTCAGACTCTATG-AAAACAAT  197
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGAGGGTCAGTTATCTTGGTTTAGAAACTTCAGACTCTATGAAAAACAAT  197

seq1  ATCTAGTCAATGCTGTATTGAGTACCAAAGTTAATGTCACATAAGTAGTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTCAATGCTGTATTGAGTACCAAAGTTAATGTCACATAAGTAGTG  247

seq1  TAGTCATTCATCTGTCAGAATCACACCTGCAGATGTTTCACAACTGTCCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATTCATCTGTCAGAATCACACCTGCAGATGTTTCACAACTGTCCC  297

seq1  ATAACAAGACTTTGCTTACTAACAAAAGCTCTCTTACCGAAGGGAAGCTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAGACTTTGCTTACTAACAAAAGCTCTCTTACCGAAGGGAAGCTT  347

seq1  AAATTTCTGTGGCTACAGTGAAAAACAGCAGCCAGTTTGGTTTGATTCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTGTGGCTACAGTGAAAAACAGCAGCCAGTTTGGTTTGATTCCT  397

seq1  TCTAAATATCAAGGGCAGTGAAATACTTCCAAGATACTTGTATCCTGGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATATCAAGGGCAGTGAAATACTTCCAAGATACTTGTATCCTGGAA  447

seq1  GACTTTTGCTAATGTTTTCTTACACACAAATTTGTTCTTTGTTACAATCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTGCTAATGTTTTCTTACACACAAATTTGTTCTTTGTTACAATCC  497

seq1  TCCTCTGACTTACCACCACAGATGTCTGTAAAAAGTAAGGTTTACATTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGACTTACCACCACAGATGTCTGTAAAAAGTAAGGTTTACATTTT  547

seq1  TGCATCTGTAACTCAATTTCATTTTCCTTATATTGCAGCCTAAGAGAAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTGTAACTCAATTTCATTTTCCTTATATTGCAGCCTAAGAGAAGC  597

seq1  TGCTACTTAAATTTTATATCAAATAAGTCATGCACAAAATTTCTGACTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTTAAATTTTATATCAAATAAGTCATGCACAAAATTTCTGACTGG  647

seq1  TAGCCCTTGCACATATTAATCAGTATAGTTATATATCCTTCACTTTTGAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTTGCACATATTAATCAGTATAGTTATATATCCTTCACTTTTGAT  697

seq1  TTAGAGAAAAAAAACATATCTTTTATTTTTTTAATCAATATACTCTGACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAAAAAAAACATATCTTTTATTTTTTTAATCAATATACTCTGACA  747

seq1  ACTGACATTTGTGCCAAGATTCCCAAAAAATTTAAATGGATTATCCTCTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATTTGTGCCAAGATTCCCAAAAAATTTAAATGGATTATCCTCTC  797

seq1  TCCCAATTACCTTAATTTTCCATGTACTTTCACTTAAGAGCATTTTTTAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATTACCTTAATTTTCCATGTACTTTCACTTAAGAGCATTTTTTAA  847

seq1  ATCTCCGTGTTGTTTGAGTTATCATCCTGTGTCATTTAATCCTTTCACGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCGTGTTGTTTGAGTTATCATCCTGTGTCATTTAATCCTTTCACGA  897

seq1  TCAGACTTGGCAAAAAGTAATTTGCACGTTGTTTCCCTGCAATTTAAATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTTGGCAAAAAGTAATTTGCACGTTGTTTCCCTGCAATTTAAATT  947

seq1  TCACACTCACCTATCACAAAAATGACCACTCAAGGCAATTGGCAAGCAGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTCACCTATCACAAAAATGACCACTCAAGGCAATTGGCAAGCAGC  997

seq1  TGCTAAAATTACTATTTTTAAGTGTGTACTGTATATAATTCCTCTACAGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAATTACTATTTTTAAGTGTGTACTGTATATAATTCCTCTACAGC  1047

seq1  AAAAATAGTCCACATTTCCCTGTGCTTGGGAATTC  1082
      |||||||||||||||||||||||||||||||||||
seq2  AAAAATAGTCCACATTTCCCTGTGCTTGGGAATTC  1082


seq1: chr3_71759019_71760132
seq2: B6Ng01-198J01.g_65_1178

seq1  GAATTCCTTCCTCTATTCCTGCCAAGCCTTTGATCACTGGAATTTTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCTCTATTCCTGCCAAGCCTTTGATCACTGGAATTTTTTTG  50

seq1  ATTTACAGAGAACCACTTAGAGACAAGAACTTTAATATATAAACACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAGAGAACCACTTAGAGACAAGAACTTTAATATATAAACACACAG  100

seq1  ATTCCTGATCAAAACATCAGAACCACTCCCCTACTCCCCTATATGTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGATCAAAACATCAGAACCACTCCCCTACTCCCCTATATGTCATA  150

seq1  GGATGCATTATGTAAAGGAGATCGTTTTAGATTTACTCTCGGGAAATTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCATTATGTAAAGGAGATCGTTTTAGATTTACTCTCGGGAAATTGG  200

seq1  ATGTTATTGCAAAGTTTTAAAAAGAGAAATTCAAATCTGTGAATTTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATTGCAAAGTTTTAAAAAGAGAAATTCAAATCTGTGAATTTTTGG  250

seq1  ATACATTACCATGAAAGTTGTGTTGTAAGTACTGGCATGGATATAATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTACCATGAAAGTTGTGTTGTAAGTACTGGCATGGATATAATGTT  300

seq1  CTGAGAAGCATTGGGATACATTAATATTGTGAAATAATTGGAACCATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGCATTGGGATACATTAATATTGTGAAATAATTGGAACCATTGT  350

seq1  GACAGATTGATTAGTCAGTAAAGTGGTTGCTTGCTATGCAAGCTCAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATTGATTAGTCAGTAAAGTGGTTGCTTGCTATGCAAGCTCAGGAA  400

seq1  CCTGAGATTTGTTGCCAGAACCCATTCTACAAGCCAGGCATGGTGGTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGATTTGTTGCCAGAACCCATTCTACAAGCCAGGCATGGTGGTGTA  450

seq1  AGTTTGTAGTCTGAGCTTTGGAGAGGTAGAGACATGTGTAACCCTGAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTAGTCTGAGCTTTGGAGAGGTAGAGACATGTGTAACCCTGAGGC  500

seq1  TTGCTATATTGTCAGCATAGTCTGTCATGGATCCCACTAAAACTTCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATATTGTCAGCATAGTCTGTCATGGATCCCACTAAAACTTCATTT  550

seq1  ATGTGACCAAGTAAGAGTCATCTAAAAAAAAACAATAAAGTTAATATAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACCAAGTAAGAGTCATCTAAAAAAAAACAATAAAGTTAATATAAG  600

seq1  CAGGGGAAACTTGGCACAGTATTCATATACACATGCTATACATATGCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAAACTTGGCACAGTATTCATATACACATGCTATACATATGCAGG  650

seq1  CTGTTTTGTAAGTCATGATGGGAATATGGCACTGCTTATTTTAAGACAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGTAAGTCATGATGGGAATATGGCACTGCTTATTTTAAGACAAC  700

seq1  TTGTGGATCTCAAACTATAGCTATTCTTTTATAATGTATCATATTTAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGATCTCAAACTATAGCTATTCTTTTATAATGTATCATATTTAAGC  750

seq1  CATCCTGACACCCAATATTTTAAGCATTTTTAAATTTTGTGCACTTAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGACACCCAATATTTTAAGCATTTTTAAATTTTGTGCACTTAGTT  800

seq1  ATTAAGTGAAAATTTAGATATGTCTACAAGTCAGTATTAAAGAGAGATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTGAAAATTTAGATATGTCTACAAGTCAGTATTAAAGAGAGATTG  850

seq1  AAAACTTAAGTAATTTTATGGAATTGATAGTTTTTAATAATGATTTCCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTAAGTAATTTTATGGAATTGATAGTTTTTAATAATGATTTCCAT  900

seq1  GTCTTAGAGAAATATATACTACAAGAAATATTTAAGACTGAAAAATACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGAGAAATATATACTACAAGAAATATTTAAGACTGAAAAATACAA  950

seq1  TGCAGTA-TTAGGGCTCAGTAGTGA-TTTGTTTCAATATCTC-TATCTAA  997
      ||||||| ||||||||||||||||| |||||||||||||||| ||||| |
seq2  TGCAGTATTTAGGGCTCAGTAGTGATTTTGTTTCAATATCTCTTATCT-A  999

seq1  CTTATAGGTAAATAAATATGAG-TGTTTACATTTTCTATTTTGATGTCTA  1046
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTATAGGTAAATAAATATGAGTTGTTTACATTTTCTATTTTGATGTCTA  1049

seq1  AAGAGAT-ATATTTTCATAATTTTAAATATTTTGTTTGTCTCTCAACATA  1095
      ||||||| ||||||||||| ||   ||||| ||||| || ||||||| ||
seq2  AAGAGATAATATTTTCATAGTT---AATATCTTGTTGGT-TCTCAAC-TA  1094

seq1  AAACA-TAAGAGTTGTTTTT  1114
      ||||| ||||||||||||||
seq2  AAACATTAAGAGTTGTTTTT  1114


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