BAC Information

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BAC

Clone NameB6Ng01-199C24
Chromosome3 (Build37)
Map Location 4,160,521 - 4,296,952
singlet/doubletdoublet
Overlap geneLOC667709
Upstream geneLOC667655, LOC100039140, Hnf4g, EG383815, LOC100039157, LOC100039167
Downstream geneLOC620283, Zfhx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199C24.bB6Ng01-199C24.g
ACCGA020587GA020588
length1,1491,168
definitionB6Ng01-199C24.b B6Ng01-199C24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,295,814 - 4,296,952)(4,160,521 - 4,161,382)
sequence
gaattcagtagagataattgaagggaaactttaatgtcatattaggtctt
tgttagtaactctttaaggatattctcctttataaataactaatgttatc
atgtacctgcagttcaactgtttggctcacagctgtcagtcctctctttc
acactgacttcttcagaagatacatgggagcagaaatgtgactagctcag
attacacacacagacacacacacacacacacacacacacacagagagaga
gagagagagagagagagagagagagagagagagagagagagtgagacttt
gggtgtaacaacttctgcatctgttgattccaggtatgtactgccaattt
taaatttccaatcaagaattaaaaacaaaatttcagcctttttaatttaa
ggaaggccatggcagctgtcaatcaaatagccatattgttgtaaattcct
cttgctgactctaaaatcatggctgtttcatgtatgtcagattgcataga
tagacttacatgttaggaagaatatccagaagaaattcagagtcattcaa
agataccagtggtactacatccctccagaggaaactggaaagcagttgta
agttccacaccccaacactagtttttgtttctaccgtgacaactatagag
ggttcttacatgaacccactcacagtcctctgtcaaaattctcaaacact
tgaatagagggattatatcttcctgccaatggcatctggaaaagatggac
tcagcatgccattacttttcttgttggtatgctaaaaatgccctgataga
aaggccaataaaagaaggcaatgtttgtttcaagtagtgacagcaagaaa
ttgaagcagtttgttgcgtcacatccacaattaggaaagcagagagagat
gaatacttcctatcttaattactctatctagataatctcttcccagacag
cctggaaaatttgtctcataggtaatacttgataattttcaggttggtga
ccaaagccttcatagattgatgatttattccaaaaacaaacaaacaaaca
aatctatcaaaacccaaaaccatccataaacaaccctgcatacttgtata
cttgtctagctacatttttatcttaccctcgagtgtacttaaggagaac

gaattctaaaatccattttcttttattcctttctttcctttcctgcttgt
aagaagaggtagcttgtcaaaccaagattaaaatccaaaattttctaaca
gtttctggcaatcatctaaaacttttaatttatttaatctgagagcgaat
ttttgagaaaacacacaatctctatacgctaaatgtctcaaatagcctaa
aagtttaccatgctaaatcttttttgaagtcattatcagtccacacttag
ttaaatattttaaagccatctgtaaaaacgctctctattttttgcaacca
acaaaaacaccattgataaaatgaattatatatgttttaggaaatgattt
cttaacttccaataaaacctaatctatgaattttttgacctttacgaagt
ctctttaaaacccatttttaattactctaaatgtgttattgcaaatctct
agcaagggcctcgaagcatgcctgggcccaacacacaacttcttacccca
gagagttctgtcaaggtaagctgaactgactcaaggggaagctgcctagc
gtctgaaagcagggtaaaattttcaaataaggctatgccctcataaaagg
gcggggaagcagaaaagcacatccaacaatcttcagattctgacgcatta
tctctttgtgtcttatacaacaaggctaaagcagaagcatttaatataga
ccacagtaaatcagtggaagaggggggcctccacgcagggagagtgggat
gaaacagggtcgtagcacaccctggggcaggaacaggggggcaggtacct
ggaagtcctatggatgctttatgattgttagaagcggaaccttaaaggtc
aggccattgtcatagttatcttgatacaatcttaggccccaggtgagagg
gcgagaactttctcaagcccctaagtttctcctcttagcagtaaatttta
tgatcagtggattacaccatcctttagtgggctgtaaggcccaggctgca
gtcatgtgttgaggaaattactgtcgcatctgccccggtatccaggagcc
cttgaaactgtttgtctctagaaaaccaaaggttgggcatgggcatgaat
cagttatttctgtgcccagttgactcctgagatccaggaagaaggttctc
tctcctctttttcatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_4295814_4296952
seq2: B6Ng01-199C24.b_46_1194 (reverse)

seq1  GTTCTCCTTAA-TTCACTTTGGAGTAAGAT-AAAATGTAGCTAGACAAGT  48
      ||||||||||| | ||||   | ||||||| |||||||||||||||||||
seq2  GTTCTCCTTAAGTACACTCGAGGGTAAGATAAAAATGTAGCTAGACAAGT  50

seq1  ATACAAGTATGCAGGTTTGTTTATGGGT-GTTTTGGGTTTTGTTTG-TTT  96
      ||||||||||||||| |||||||||| | ||||||||||||| | | |||
seq2  ATACAAGTATGCAGGGTTGTTTATGGATGGTTTTGGGTTTTGATAGATTT  100

seq1  GTTTGTTTGTTTGTTTT--GGATAAATCATCAATCTATGAAGGCTTTGGT  144
      |||||||||||||||||  | |||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTGTTTTTGGAATAAATCATCAATCTATGAAGGCTTTGGT  150

seq1  CACCAACCTG-AAATTATCAAGTATTACCTATGAGACAAA-TTTCCAGGC  192
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  CACCAACCTGAAAATTATCAAGTATTACCTATGAGACAAATTTTCCAGGC  200

seq1  TGTCTGGG-AGAGATTATCTAGATAGAGTAATTAAGATAGGAAGTATTCA  241
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGGAAGAGATTATCTAGATAGAGTAATTAAGATAGGAAGTATTCA  250

seq1  TCTCTCTCTGCTTTCCTAATTGTGGATGTGACGCAACAAACTGCTTCAAT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTGCTTTCCTAATTGTGGATGTGACGCAACAAACTGCTTCAAT  300

seq1  TTCTTGCTGTCACTACTTGAAACAAACATTGCCTTC-TTTATTGGCCTTT  340
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTCTTGCTGTCACTACTTGAAACAAACATTGCCTTCTTTTATTGGCCTTT  350

seq1  CTATCAGGGCATTTTTAGCATACCAACAAGAAAAGTAATGGCATGCTGAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGGGCATTTTTAGCATACCAACAAGAAAAGTAATGGCATGCTGAG  400

seq1  TCCATCTTTTCCAGATGCCATTGGCAGGAAGATATAATCCCTCTATTCAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTTTCCAGATGCCATTGGCAGGAAGATATAATCCCTCTATTCAA  450

seq1  GTGTTTGAGAATTTTGACAGAGGACTGTGAGTGGGTTCATGTAAGAACCC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGAGAATTTTGACAGAGGACTGTGAGTGGGTTCATGTAAGAACCC  500

seq1  TCTATAGTTGTCACGGTAGAAACAAAAACTAGTGTTGGGGTGTGGAACTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGTTGTCACGGTAGAAACAAAAACTAGTGTTGGGGTGTGGAACTT  550

seq1  ACAACTGCTTTCCAGTTTCCTCTGGAGGGATGTAGTACCACTGGTATCTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGCTTTCCAGTTTCCTCTGGAGGGATGTAGTACCACTGGTATCTT  600

seq1  TGAATGACTCTGAATTTCTTCTGGATATTCTTCCTAACATGTAAGTCTAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGACTCTGAATTTCTTCTGGATATTCTTCCTAACATGTAAGTCTAT  650

seq1  CTATGCAATCTGACATACATGAAACAGCCATGATTTTAGAGTCAGCAAGA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCAATCTGACATACATGAAACAGCCATGATTTTAGAGTCAGCAAGA  700

seq1  GGAATTTACAACAATATGGCTATTTGATTGACAGCTGCCATGGCCTTCCT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTACAACAATATGGCTATTTGATTGACAGCTGCCATGGCCTTCCT  750

seq1  TAAATTAAAAAGGCTGAAATTTTGTTTTTAATTCTTGATTGGAAATTTAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAAAAAGGCTGAAATTTTGTTTTTAATTCTTGATTGGAAATTTAA  800

seq1  AATTGGCAGTACATACCTGGAATCAACAGATGCAGAAGTTGTTACACCCA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCAGTACATACCTGGAATCAACAGATGCAGAAGTTGTTACACCCA  850

seq1  AAGTCTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  900

seq1  CTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTAATC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTAATC  950

seq1  TGAGCTAGTCACATTTCTGCTCCCATGTATCTTCTGAAGAAGTCAGTGTG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAGTCACATTTCTGCTCCCATGTATCTTCTGAAGAAGTCAGTGTG  1000

seq1  AAAGAGAGGACTGACAGCTGTGAGCCAAACAGTTGAACTGCAGGTACATG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGGACTGACAGCTGTGAGCCAAACAGTTGAACTGCAGGTACATG  1050

seq1  ATAACATTAGTTATTTATAAAGGAGAATATCCTTAAAGAGTTACTAACAA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTAGTTATTTATAAAGGAGAATATCCTTAAAGAGTTACTAACAA  1100

seq1  AGACCTAATATGACATTAAAGTTTCCCTTCAATTATCTCTACTGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTAATATGACATTAAAGTTTCCCTTCAATTATCTCTACTGAATTC  1149


seq1: chr3_4160521_4161382
seq2: B6Ng01-199C24.g_371_1230

seq1  ACCATTGATAAAATGAATTATATATGTTTTAGGAAATGATTTCTTAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGATAAAATGAATTATATATGTTTTAGGAAATGATTTCTTAACTT  50

seq1  CCAATAAAACCTAATCTATGAATTTTTTGACCTTTACGAAGTCTCTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAAACCTAATCTATGAATTTTTTGACCTTTACGAAGTCTCTTTAA  100

seq1  AACCCATTTTTAATTACTCTAAATGTGTTATTGCAAATCTCTAGCAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATTTTTAATTACTCTAAATGTGTTATTGCAAATCTCTAGCAAGGG  150

seq1  CCTCGAAGCATGCCTGGGCCCAACACACAACTTCTTACCCCAGAGAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAAGCATGCCTGGGCCCAACACACAACTTCTTACCCCAGAGAGTTC  200

seq1  TGTCAAGGTAAGCTGAACTGACTCAAGGGGAAGCTGCCTAGCGTCTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGGTAAGCTGAACTGACTCAAGGGGAAGCTGCCTAGCGTCTGAAA  250

seq1  GCAGGGTAAAATTTTCAAATAAGGCTATGCCCTCATAAAAGGGCGGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTAAAATTTTCAAATAAGGCTATGCCCTCATAAAAGGGCGGGGAA  300

seq1  GCAGAAAAGCACATCCAACAATCTTCAGATTCTGACGCATTATCTCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAAGCACATCCAACAATCTTCAGATTCTGACGCATTATCTCTTTG  350

seq1  TGTCTTATACAACAAGGCTAAAGCAGAAGCATTTAATATAGACCACAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTATACAACAAGGCTAAAGCAGAAGCATTTAATATAGACCACAGTA  400

seq1  AATCAGTGGAAGAGGGGGGCCTCCACGCAGGGAGAGTGGGATGAAACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTGGAAGAGGGGGGCCTCCACGCAGGGAGAGTGGGATGAAACAGG  450

seq1  GTCGTAGCACACCCTGGGGCAGGAACAGGGGGGCAGGTACCTGGAAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTAGCACACCCTGGGGCAGGAACAGGGGGGCAGGTACCTGGAAGTCC  500

seq1  TATGGATGCTTTATGATTGTTAGAAGCGGAACCTTAAAGGTCAGGCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATGCTTTATGATTGTTAGAAGCGGAACCTTAAAGGTCAGGCCATT  550

seq1  GTCATAGTTATCTTGATACAATCTTAGGCCCCAGGTGAGAGGGCGAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGTTATCTTGATACAATCTTAGGCCCCAGGTGAGAGGGCGAGAAC  600

seq1  TTTCTCAAGCCCCTAAGTTTCTCCTCTTAGCAGTAAATTTTATGATCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAAGCCCCTAAGTTTCTCCTCTTAGCAGTAAATTTTATGATCAGT  650

seq1  GGATTACACCATCCTTTAGTGGGCTGTAAGGGCCAGGCTGCAGGCCAATG  700
      ||||||||||||||||||||||||||||||| ||||||||||| |  |||
seq2  GGATTACACCATCCTTTAGTGGGCTGTAAGGCCCAGGCTGCAGTC--ATG  698

seq1  TGTTGAGGAAATTACTGTCGCATCTGCCCCGGTATCCAGGAGCCCTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGGAAATTACTGTCGCATCTGCCCCGGTATCCAGGAGCCCTTGAA  748

seq1  ACTGTTTGTCCTCTAGAAA--CAAAG--TTGGCATGGGCCATGAATCAGT  796
      ||||||||| |||||||||  |||||  | |||||||| |||||||||||
seq2  ACTGTTTGT-CTCTAGAAAACCAAAGGTTGGGCATGGG-CATGAATCAGT  796

seq1  TATTTTCTGTGCCCAGTAGACTTCTGAGGATCCCAGGGAGGAAGGTCCTC  846
      || |||||||||||||| |||| |||| |||||   ||| |||||| |||
seq2  TA-TTTCTGTGCCCAGTTGACTCCTGA-GATCC--AGGAAGAAGGTTCTC  842

seq1  TCTCCTC--TTTCATATA  862
      |||||||  |||||||||
seq2  TCTCCTCTTTTTCATATA  860


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