BAC Information

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BAC

Clone NameB6Ng01-199F08
Chromosome3 (Build37)
Map Location 60,377,299 - 60,524,344
singlet/doubletdoublet
Overlap geneMbnl1
Upstream geneEG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485
Downstream geneLOC676933, LOC100040501, EG666853, P2ry1, Rap2b, LOC666891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199F08.bB6Ng01-199F08.g
ACCGA020692GA020693
length1,145774
definitionB6Ng01-199F08.b B6Ng01-199F08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,377,299 - 60,378,441)(60,523,574 - 60,524,344)
sequence
acatcccaatttgtttgtaaaaagcttgggttgagagcagaccatgtgtc
tttggagcattgctgttacctgggaaggagcaggtcagggacctctctgt
ttcatggggatccgtgcacttaaggtggggattgtaaagcccagggtttc
ttttcacaaggtggatgaaaacttttgttatttcttgtcaagaggttgtt
gaatcagtctctgttcttctgacatcctaatctgcttcagtgcaggaagc
agggtttctagggacttccgtggtatgtttgttaattgaccactttaagt
aacgaagtagttagtgtaacttagccctaccttactttctacaaggaaag
tatatttaggcatgtttagtgagcagaagtgatgataaccaagtcagcaa
gcctgtgcaccaagtccttcatctttcaccctacttggcaatcagggcct
ccttccattttctctctctgatatcagacaaatggtgggagaggaaagga
agctagctttccactcatctgatccattgctaaattaaatatgttcaaga
agttataaaaccaaaggaaactttttctttgccaaaatcctaataaacta
tacaaaaacatatattgtacatccagtagttgttgcttgtttgatgtcag
gtcatgtagcatcaaaggggacaaaagctagagaaagcacattgtgctgg
gtagaataatgagagataaaatggagctagggtttctctgcctctagatc
tttcaagtaatctgaagtatggaaaagaaaaggaaatgttaaaaatctaa
cacggatgaggctcgttttaactttacggcgcttcccatgtgttacacgt
tgtcttccatggcaggaagctcacaggccgcgtctgttctgatatttctc
cttgctgcatcagtgctcgagcaagggctagtcttcccctggtgtttcct
ttatcttcttaaagtcagctttccttatcttgagcatgtgttcagttcca
ttttattgctggtttgtgcgttctggacaggaaacaggaactttcccttc
aggatcattcatacttacaagtgtcctcacaactctaagtgccctcattt
ctagaaggactgccttctcagttaccatgccacgacgcactgact
gaattccaggctgtccttgaatacaagatagatccacttgcctcttcctc
ccaagtgctggcatcagatgtatgtactattgtgcctggataaaaatcat
tttgttttaatgatgtcccacagagtaacaaagttgttaaatagttgatc
taaaacatacagaagagataaagaattgtatgcctagaataatgaaatca
tcatggttcacttgattatatacatgtacagaacagtaagaacaaacact
tagattggcatgatggtacattcctggcatctcggctattgagttgaaag
tggggggatcccaagctcagggccagcctgggctacatgaggccctcatt
caaaagtcataaaaatgctaacacacacacaaacagaaacgttcatagat
tgcaacattctggataaacttaattctttacctcagccccctcctctctt
ttttacctttatgtgttatctgcatttacttgttagtgtgtttattgctt
tctttgatattccccatgcacatttctctggcaactaggtagcctattcg
agaccaaagacaaacactgtgcaacatcaattcagatttacactccaagg
attattagttttcagtttggtggtagttgattatattttttcaaaaaaat
gagcttttatctgaatcaatgtgtgcatatggacacacacacacaaacac
atacacatgggggagggttaaaggttacatttttatttagtgtcctgctg
aaagtcaaagcagagtaattaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_60377299_60378441
seq2: B6Ng01-199F08.b_43_1187

seq1  ACATCCCAATTTGTTTGTAAAAAGCTTGGGTTGAGAGCAGACCATGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCAATTTGTTTGTAAAAAGCTTGGGTTGAGAGCAGACCATGTGTC  50

seq1  TTTGGAGCATTGCTGTTACCTGGGAAGGAGCAGGTCAGGGACCTCTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGCATTGCTGTTACCTGGGAAGGAGCAGGTCAGGGACCTCTCTGT  100

seq1  TTCATGGGGATCCGTGCACTTAAGGTGGGGATTGTAAAGCCCAGGGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGGGATCCGTGCACTTAAGGTGGGGATTGTAAAGCCCAGGGTTTC  150

seq1  TTTTCACAAGGTGGATGAAAACTTTTGTTATTTCTTGTCAAGAGGTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAAGGTGGATGAAAACTTTTGTTATTTCTTGTCAAGAGGTTGTT  200

seq1  GAATCAGTCTCTGTTCTTCTGACATCCTAATCTGCTTCAGTGCAGGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGTCTCTGTTCTTCTGACATCCTAATCTGCTTCAGTGCAGGAAGC  250

seq1  AGGGTTTCTAGGGACTTCCGTGGTATGTTTGTTAATTGACCACTTTAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTAGGGACTTCCGTGGTATGTTTGTTAATTGACCACTTTAAGT  300

seq1  AACGAAGTAGTTAGTGTAACTTAGCCCTACCTTACTTTCTACAAGGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAAGTAGTTAGTGTAACTTAGCCCTACCTTACTTTCTACAAGGAAAG  350

seq1  TATATTTAGGCATGTTTAGTGAGCAGAAGTGATGATAACCAAGTCAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTAGGCATGTTTAGTGAGCAGAAGTGATGATAACCAAGTCAGCAA  400

seq1  GCCTGTGCACCAAGTCCTTCATCTTTCACCCTACTTGGCAATCAGGGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGCACCAAGTCCTTCATCTTTCACCCTACTTGGCAATCAGGGCCT  450

seq1  CCTTCCATTTTCTCTCTCTGATATCAGACAAATGGTGGGAGAGGAAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCATTTTCTCTCTCTGATATCAGACAAATGGTGGGAGAGGAAAGGA  500

seq1  AGCTAGCTTTCCACTCATCTGATCCATTGCTAAATTAAATATGTTCAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCTTTCCACTCATCTGATCCATTGCTAAATTAAATATGTTCAAGA  550

seq1  AGTTATAAAACCAAAGGAAACTTTTTCTTTGCCAAAATCCTAATAAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAAAACCAAAGGAAACTTTTTCTTTGCCAAAATCCTAATAAACTA  600

seq1  TACAAAAACATATATTGTACATCCAGTAGTTGTTGCTTGTTTGATGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAACATATATTGTACATCCAGTAGTTGTTGCTTGTTTGATGTCAG  650

seq1  GTCATGTAGCATCAAAGGGGACAAAAGCTAGAGAAAGCACATTGTGCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTAGCATCAAAGGGGACAAAAGCTAGAGAAAGCACATTGTGCTGG  700

seq1  GTAGAATAATGAGAGATAAAATGGAGCTAGGGTTTCTCTGCCTCTAGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATAATGAGAGATAAAATGGAGCTAGGGTTTCTCTGCCTCTAGATC  750

seq1  -TTCAAGTAATCTGAAGTATGGAAAAGAAAAGGAAATGTTAAAAATCTAA  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTAATCTGAAGTATGGAAAAGAAAAGGAAATGTTAAAAATCTAA  800

seq1  CACGGATGAGGCTCGTTTTAACTTTACGGCGCTTCCCATGTGTTACACGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGATGAGGCTCGTTTTAACTTTACGGCGCTTCCCATGTGTTACACGT  850

seq1  TGTCTTCCATGGCAGGAAGCTCACAGGCCGCGTCTGTTCTGATATTTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCATGGCAGGAAGCTCACAGGCCGCGTCTGTTCTGATATTTCTC  900

seq1  CTTGCTGCATCAGTGCTCGAGCAAGGGCTAGTCTTCCCCTGGTGTTTCC-  948
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTGCTGCATCAGTGCTCGAGCAAGGGCTAGTCTTCCCCTGGTGTTTCCT  950

seq1  TTATC-TCTTAAAGTCAGCTTTCCTTATCTTTGAGCATTGTGTTCAGTTC  997
      ||||| ||||||||||||||||||||||| ||||||| ||||||||||||
seq2  TTATCTTCTTAAAGTCAGCTTTCCTTATC-TTGAGCA-TGTGTTCAGTTC  998

seq1  CATTTTATTGCTGGTTTGTGCGTTCTGGACAAGGAAACAGG-ACTTTCCC  1046
      |||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  CATTTTATTGCTGGTTTGTGCGTTCTGGAC-AGGAAACAGGAACTTTCCC  1047

seq1  TCAAGGATCATTCCATACTTACAAGGTGTCCTCACAACTCTAAGTTGCCT  1096
      |  ||||||||| ||||||||||| ||||||||||||||||||||  |||
seq2  TTCAGGATCATT-CATACTTACAA-GTGTCCTCACAACTCTAAGTGCCCT  1095

seq1  CA-TTCTAG-AGGACTG-CTTCTCAGTTACATGGCAAGGACGCACTGACT  1143
      || |||||| ||||||| ||||||||||||   || | ||||||||||||
seq2  CATTTCTAGAAGGACTGCCTTCTCAGTTACCATGCCACGACGCACTGACT  1145

seq1: chr3_60523574_60524344
seq2: B6Ng01-199F08.g_67_839 (reverse)

seq1  ATTAATTACTCTGCTTTTAC-TTCAGCA-GACACTAAATAAAAATGTAAC  48
      ||||||||||||||||| || ||||||| |||||||||||||||||||||
seq2  ATTAATTACTCTGCTTTGACTTTCAGCAGGACACTAAATAAAAATGTAAC  50

seq1  CTTTAACCCTCCCCCATGTGTATGTGTTTGTGTGTGTGTGTCCATATGCA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACCCTCCCCCATGTGTATGTGTTTGTGTGTGTGTGTCCATATGCA  100

seq1  CACATTGATTCAGATAAAAGCTCATTTTTTTGAAAAAATATAATCAACTA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGATTCAGATAAAAGCTCATTTTTTTGAAAAAATATAATCAACTA  150

seq1  CCACCAAACTGAAAACTAATAATCCTTGGAGTGTAAATCTGAATTGATGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAACTGAAAACTAATAATCCTTGGAGTGTAAATCTGAATTGATGT  200

seq1  TGCACAGTGTTTGTCTTTGGTCTCGAATAGGCTACCTAGTTGCCAGAGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGTGTTTGTCTTTGGTCTCGAATAGGCTACCTAGTTGCCAGAGAA  250

seq1  ATGTGCATGGGGAATATCAAAGAAAGCAATAAACACACTAACAAGTAAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCATGGGGAATATCAAAGAAAGCAATAAACACACTAACAAGTAAAT  300

seq1  GCAGATAACACATAAAGGTAAAAAAGAGAGGAGGGGGCTGAGGTAAAGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATAACACATAAAGGTAAAAAAGAGAGGAGGGGGCTGAGGTAAAGAA  350

seq1  TTAAGTTTATCCAGAATGTTGCAATCTATGAACGTTTCTGTTTGTGTGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTATCCAGAATGTTGCAATCTATGAACGTTTCTGTTTGTGTGTG  400

seq1  TGTTAGCATTTTTATGACTTTTGAATGAGGGCCTCATGTAGCCCAGGCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCATTTTTATGACTTTTGAATGAGGGCCTCATGTAGCCCAGGCTG  450

seq1  GCCCTGAGCTTGGGATCCCCCCACTTTCAACTCAATAGCCGAGATGCCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAGCTTGGGATCCCCCCACTTTCAACTCAATAGCCGAGATGCCAG  500

seq1  GAATGTACCATCATGCCAATCTAAGTGTTTGTTCTTACTGTTCTGTACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTACCATCATGCCAATCTAAGTGTTTGTTCTTACTGTTCTGTACAT  550

seq1  GTATATAATCAAGTGAACCATGATGATTTCATTATTCTAGGCATACAATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAATCAAGTGAACCATGATGATTTCATTATTCTAGGCATACAATT  600

seq1  CTTTATCTCTTCTGTATGTTTTAGATCAACTATTTAACAACTTTGTTACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCTCTTCTGTATGTTTTAGATCAACTATTTAACAACTTTGTTACT  650

seq1  CTGTGGGACATCATTAAAACAAAATGATTTTTATCCAGGCACAATAGTAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGACATCATTAAAACAAAATGATTTTTATCCAGGCACAATAGTAC  700

seq1  ATACATCTGATGCCAGCACTTGGGAGGAAGAGGCAAGTGGATCTATCTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCTGATGCCAGCACTTGGGAGGAAGAGGCAAGTGGATCTATCTTG  750

seq1  TATTCAAGGACAGCCTGGAATTC  771
      |||||||||||||||||||||||
seq2  TATTCAAGGACAGCCTGGAATTC  773