BAC Information

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BAC

Clone NameB6Ng01-199F16
Chromosome3 (Build37)
Map Location 28,737,801 - 28,738,873
singlet/doubletsinglet
Overlap genenone
Upstream geneE030011K20Rik, Pld1, Tnik, Slc2a2, EG624446, Eif5a2, Rpl22l1
Downstream geneGm1527, 6130401L20Rik, LOC100040676
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199F16.bB6Ng01-199F16.g
ACCGA020708GA020709
length1,0701,191
definitionB6Ng01-199F16.b B6Ng01-199F16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgagttactaatctgaacttaaactggttttatttattatgt
tagtttatttatctattttttatttatacatttatttgtgtgagtatgca
tgggcatgtatatatacatgtatatcccatgtgtggagatcagaagacaa
cttttaggaattaatcagttctctccttctatcctgtgggttcccagggt
tgatctcaggttctcagtcttggaagcatgcacctttaccctctgagcca
tttcactggccccagttgtttattaataatagaaagttgatctctttgat
gatggatgttaaaaaaatattggaaatactgtagactccctagtgccaga
gaataatttttatacttaaggttcatttaatcttttcatcaatataatca
tttgaaaacagctaagggaaacatctcaggtcagtgcagggaagagggtg
tcaagtttagctgaagccaagaaaagcctttcttaccttcctcaactctg
gggcttggaggttctcttcttaggggtccaggaccccttgaagttggatg
atacatgttgtgtttgcttgtgagtagtcttctactcaagggtctgtgac
tatcactgggtcttcaaagggtaatgacacagaaaagggtttaaaaaatt
gttgtcaatgcatagcatactattggtcttttaaaataaatattaatata
tacacatacatatgtgtataatttggatttttggaaactttagctatgct
gtcaactttggccaaaagtatctcagtttaccatgttgagtgctatttgt
acagagattaccaggcacactgggtctttgtgggttgtgtcctctttggg
gggtcaaatgatccttttcacagaggtttcctaagaccattagaaaacac
atattttatgattcattacaactattgaagtagcctcaaaaattaggttt
atgggtgtcagtgaccacacacgagggaattatattaaaagtgttcatgg
caataggaaggtttagaaccagtggttgaatgggaatggcctaacttgtt
gtcagacttggcaatactta
gaattccacataaaaccagggacactgagggcccaagaggactcttcaca
ctgtaggacccctagcacaggaccgtgggatgacgggtgagtagaacaca
acatcagctccaaagaatcacggagggtcttgtgacagcaggaacaggga
caagggaaccccaactgaccagagactgggatatgttccagtcagtgtca
gccccgacatcttccttgtgaacctggcagaggatgccaaggtccccaga
ggactctccacaccacagaacccctaccacacccaggaatgtgtgatcac
tggagagcacgtgggtgacaaaagtaagagaatttcttggacggggtccc
ttcaggccttcatcctcagccaggaggcaaacccgagacccagacccctg
ggcaccttctttgccagaggagagtctgcctacagggagggctctgaccc
taggactcaggagatggatctgagctctagacttctggacacctgccctg
caagaggagaccttgaccactgggactcaggtgagaggtgaactcccagg
aatgcttacagaggctaacagaatcacaggacaaataagctccagccaga
aacagctagaacattaacaccagagattaccaaatggtgaaatgcaaact
taagaatcttactagcagaaaccaagacaactgggcataatcagaaccca
gtatgcccaccacagtgagtcctggatacaccaacacacgcaaaagcaag
actcggattaaaaatgtatctcattatggtgataaaagattttaagaagg
gcattaataactcacttaaagaaatacagaagaacactgctaaacaggta
gaagtcctttaagaggaaacacaaaaatcccttagagaattagaggaaaa
cagaaccaaacaggtaattgtaattgaacaaaactatcccagatctaaaa
aggtaagtagaaacaatgaaaaaaaaatccaacggagaacaactctgaag
atagaaaccctaggaaagaaatcagaaacatagatgtgagcatcagtaac
agatacagagatggaagagaatatctcagtgcagaagatttcaataggga
catggcacaccattaaaaaattgccattgcaaagattctacctcaaactt
cccaggaatctccaggaaacacatagtgagaagagacacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_28737801_28738873
seq2: B6Ng01-199F16.b_44_1113

seq1  GAATTCTCTGAGTTACTAATCTGAACTTAAACTGGTTTTATTTATTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAGTTACTAATCTGAACTTAAACTGGTTTTATTTATTATGT  50

seq1  TAGTTTATTTATCTATTTTTTATTTATACATTTATTTGTGTGAGTATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTATTTATCTATTTTTTATTTATACATTTATTTGTGTGAGTATGCA  100

seq1  TGGGCATGTATATATACATGTATATCCCATGTGTGGAGATCAGAAGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATGTATATATACATGTATATCCCATGTGTGGAGATCAGAAGACAA  150

seq1  CTTTTAGGAATTAATCAGTTCTCTCCTTCTATCCTGTGGGTTCCCAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGGAATTAATCAGTTCTCTCCTTCTATCCTGTGGGTTCCCAGGGT  200

seq1  TGATCTCAGGTTCTCAGTCTTGGAAGCATGCACCTTTACCCTCTGAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCAGGTTCTCAGTCTTGGAAGCATGCACCTTTACCCTCTGAGCCA  250

seq1  TTTCACTGGCCCCAGTTGTTTATTAATAATAGAAAGTTGATCTCTTTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGGCCCCAGTTGTTTATTAATAATAGAAAGTTGATCTCTTTGAT  300

seq1  GATGGATGTTAAAAAAATATTGGAAATACTGTAGACTCCCTAGTGCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATGTTAAAAAAATATTGGAAATACTGTAGACTCCCTAGTGCCAGA  350

seq1  GAATAATTTTTATACTTAAGGTTCATTTAATCTTTTCATCAATATAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTTTTATACTTAAGGTTCATTTAATCTTTTCATCAATATAATCA  400

seq1  TTTGAAAACAGCTAAGGGAAACATCTCAGGTCAGTGCAGGGAAGAGGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAACAGCTAAGGGAAACATCTCAGGTCAGTGCAGGGAAGAGGGTG  450

seq1  TCAAGTTTAGCTGAAGCCAAGAAAAGCCTTTCTTACCTTCCTCAACTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTAGCTGAAGCCAAGAAAAGCCTTTCTTACCTTCCTCAACTCTG  500

seq1  GGGCTTGGAGGTTCTCTTCTTAGGGGTCCAGGACCCCTTGAAGTTGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGGAGGTTCTCTTCTTAGGGGTCCAGGACCCCTTGAAGTTGGATG  550

seq1  ATACATGTTGTGTTTGCTTGTGAGTAGTCTTCTACTCAAGGGTCTGTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTTGTGTTTGCTTGTGAGTAGTCTTCTACTCAAGGGTCTGTGAC  600

seq1  TATCACTGGGTCTTCAAAGGGTAATGACACAGAAAAGGGTTTAAAAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTGGGTCTTCAAAGGGTAATGACACAGAAAAGGGTTTAAAAAATT  650

seq1  GTTGTCAATGCATAGCATACTATTGGTCTTTTAAAATAAATATTAATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAATGCATAGCATACTATTGGTCTTTTAAAATAAATATTAATATA  700

seq1  TACACATACATATGTGTATAATTTGGATTTTTGGAAACTTTAGCTATGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATACATATGTGTATAATTTGGATTTTTGGAAACTTTAGCTATGCT  750

seq1  GTCAACTTTGGCCAAAAGTATCTCAGTTTACCATGTTGAGTGCTA-TTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTCAACTTTGGCCAAAAGTATCTCAGTTTACCATGTTGAGTGCTATTTGT  800

seq1  ACAGAGATTACCAGGCACACT-GGTCTTTGTGGGTTGTGTCCTCTTT-GG  847
      ||||||||||||||||||||| ||||||||||||||||||||||||| ||
seq2  ACAGAGATTACCAGGCACACTGGGTCTTTGTGGGTTGTGTCCTCTTTGGG  850

seq1  GGGTCAAATGATCC-TTTCACAGAGGTTTCCTAAGACCATTAGAAAACAC  896
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGGTCAAATGATCCTTTTCACAGAGGTTTCCTAAGACCATTAGAAAACAC  900

seq1  ATA-TTTATGATTCATTACAACTA-TGAAGTAGCCTCAAAAA-TAGGTTT  943
      ||| |||||||||||||||||||| ||||||||||||||||| |||||||
seq2  ATATTTTATGATTCATTACAACTATTGAAGTAGCCTCAAAAATTAGGTTT  950

seq1  ATGGTTGTCAGTGACCACAACACGA-GGAATTATATT-AAAGTG-TCATG  990
      |||| ||||||||||||| |||||| ||||||||||| |||||| |||||
seq2  ATGGGTGTCAGTGACCAC-ACACGAGGGAATTATATTAAAAGTGTTCATG  999

seq1  GCAATAGGAAGGTTTAGAACCAGTGGTTG-ATGGG-ATGGCTAAACTTGT  1038
      ||||||||||||||||||||||||||||| ||||| |||||  |||||||
seq2  GCAATAGGAAGGTTTAGAACCAGTGGTTGAATGGGAATGGCCTAACTTGT  1049

seq1  TGTCAG-CTTGGCATACCTAGGTAAAGGGATACTTA  1073
      |||||| |||||||               |||||||
seq2  TGTCAGACTTGGCA---------------ATACTTA  1070