BAC Information

Click to search

BAC

Clone NameB6Ng01-200J05
Chromosome3 (Build37)X (Build37)
Map Location 60,642,984 - 60,643,631107,331,439 - 107,331,540
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1, LOC676933
Downstream geneLOC100040501, EG666853, P2ry1, Rap2b, LOC666891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200J05.bB6Ng01-200J05.g
ACCGA021596GA021597
length865907
definitionB6Ng01-200J05.b B6Ng01-200J05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,642,984 - 60,643,631)(107,331,439 - 107,331,540)
sequence
gaattcagtttcattctttaacatatcaacagcaagttttgtctatcatc
tgttgccatggctaccccttccccatgtgtggacttagtatttataaaag
atcaattgaccttagatttcacatgttttctttgttctgtctgtgcctgt
ggtaattacagctttgtaaaatgtgaaagggggtatgttcttttttttat
atatgattacttcagcaatttatggtcttcagtggtttcatataaatttt
agggttgattttctatttcaatgaagaattgcattggtattttgaaaggt
attacttccaatatgaatccaagcaattttttccatggaagttggacatt
ctaggaacactaacttttcaatcctaggattgcagattacatttccacaa
atttgtaaatccttcaattgttttaaatggcaacagggctgaaactgcag
ggatttatgttaaataaaatcagccagttccagtaagacaaacaccacat
gtgacttcaatgttcagaatctaaaaaaaaaaaaaatgttgaacttactg
aagtaaacacttataatagcaatacctaaggactctagtatactggtctg
gcatggaaaagtaagggagagacaggacaatgggcatcaagttacagcca
tataagatgacagtctggagtgctaaggtaaataaaaaagaaatgccatt
cctgccttccaaaatagaagaaaaaaattttagcaaattttcaagtattt
gaagtgacaaatatgcaaaccacattatgagatacatatatatatatata
tgtatatatatatacatatatatatatatatgtatgtatatgtacacaca
cacaaatgtagataa
gaattctctcttttgctctgttctccattttttaattgggttatttggtg
ttttggagattaacttcttgagttctttatatattttggatattaacccc
tctttgaagtagggttagtgaagatttttttccccaatatgtaggttgct
gatttgtcctattgatagtgtcttttgccttacagaagcttttagaaatt
gccacctagacacagttgctgggtgcagaatctcctgcctggagaggcat
gccctcctcagttattatcttcatttctcctcctaccctaaacttagtgg
cttatatcagctagccactactagccactttggcccctgcccatagcaga
ggctacaggtcctagctgccctgagacctcacatgactgctgctttttat
tcattccaaagcatggtggaaaagtcctctctctttccctacatctcctt
tttctcctgggatccagaattcccacttgtatcttctgtccagcaattgg
ccctgacctcttaattgaagagtcaagaaccaattggggaataagacctt
agtgacagaacctccccttacagtattgcttctagtttctctcgatttca
tttgatcttgaatgctggtttgctatataatgattttattatgtttaggt
atgtgccatgaatttctgatttctacaagattttgtaaaatgaaggggtg
ttgtattttgttgatttcttcagcatctaatgagattattatgtgacttt
ctttccttgactttgttatatattgtattatgttgatggcttttttgtaa
tattgaactatccctgcatcccagggatgaaacctaaattacttctggtg
aatgatgatttgatgggtctggattcagtttgtgagaattttattgagta
tttgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_60642984_60643631
seq2: B6Ng01-200J05.b_46_693

seq1  GAATTCAGTTTCATTCTTTAACATATCAACAGCAAGTTTTGTCTATCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTCATTCTTTAACATATCAACAGCAAGTTTTGTCTATCATC  50

seq1  TGTTGCCATGGCTACCCCTTCCCCATGTGTGGACTTAGTATTTATAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCATGGCTACCCCTTCCCCATGTGTGGACTTAGTATTTATAAAAG  100

seq1  ATCAATTGACCTTAGATTTCACATGTTTTCTTTGTTCTGTCTGTGCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTGACCTTAGATTTCACATGTTTTCTTTGTTCTGTCTGTGCCTGT  150

seq1  GGTAATTACAGCTTTGTAAAATGTGAAAGGGGGTATGTTCTTTTTTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTACAGCTTTGTAAAATGTGAAAGGGGGTATGTTCTTTTTTTTAT  200

seq1  ATATGATTACTTCAGCAATTTATGGTCTTCAGTGGTTTCATATAAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTACTTCAGCAATTTATGGTCTTCAGTGGTTTCATATAAATTTT  250

seq1  AGGGTTGATTTTCTATTTCAATGAAGAATTGCATTGGTATTTTGAAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGATTTTCTATTTCAATGAAGAATTGCATTGGTATTTTGAAAGGT  300

seq1  ATTACTTCCAATATGAATCCAAGCAATTTTTTCCATGGAAGTTGGACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTCCAATATGAATCCAAGCAATTTTTTCCATGGAAGTTGGACATT  350

seq1  CTAGGAACACTAACTTTTCAATCCTAGGATTGCAGATTACATTTCCACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAACACTAACTTTTCAATCCTAGGATTGCAGATTACATTTCCACAA  400

seq1  ATTTGTAAATCCTTCAATTGTTTTAAATGGCAACAGGGCTGAAACTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAAATCCTTCAATTGTTTTAAATGGCAACAGGGCTGAAACTGCAG  450

seq1  GGATTTATGTTAAATAAAATCAGCCAGTTCCAGTAAGACAAACACCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTATGTTAAATAAAATCAGCCAGTTCCAGTAAGACAAACACCACAT  500

seq1  GTGACTTCAATGTTCAGAATCTAAAAAAAAAAAAAATGTTGAACTTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTCAATGTTCAGAATCTAAAAAAAAAAAAAATGTTGAACTTACTG  550

seq1  AAGTAAACACTTATAATAGCAATACCTAAGGACTCTAGTATACTGGTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAACACTTATAATAGCAATACCTAAGGACTCTAGTATACTGGTCTG  600

seq1  GCATGGAAAAGTAAGGGAGAGACAGGACAATGGGCATCAAGTTACAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAAAAGTAAGGGAGAGACAGGACAATGGGCATCAAGTTACAGC  648

seq1: chrX_107331439_107331540
seq2: B6Ng01-200J05.g_877_974 (reverse)

seq1  ATGCAAAAGTACTCAATAAAATTCTCACTAACTGAATCCAAGGACACATC  50
      |||||||  ||||||||||||||||||| |||||||||||  ||| ||||
seq2  ATGCAAA--TACTCAATAAAATTCTCACAAACTGAATCCA--GACCCATC  46

seq1  AAAACAATCATCCATCCTTACCAA-GTAGGTTTCATTCCAAGGATGCAGG  99
      ||| | ||||| || |   |  ||  |||||||||| ||  |||||||||
seq2  AAATC-ATCATTCACCAGAAGTAATTTAGGTTTCATCCCTGGGATGCAGG  95

seq1  GAT  102
      |||
seq2  GAT  98