BAC Information

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BAC

Clone NameB6Ng01-200L06
Chromosome3 (Build37)
Map Location 90,359,993 - 90,474,908
singlet/doubletdoublet
Overlap geneEG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8
Upstream geneKcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16
Downstream geneS100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200L06.bB6Ng01-200L06.g
ACCGA021692GA021693
length1,1581,092
definitionB6Ng01-200L06.b B6Ng01-200L06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,359,993 - 90,361,118)(90,473,831 - 90,474,908)
sequence
gaattcagggttcacaagcaggccccttagcttggcctcatccctgcagc
ctttatttgattcattatttagttggtaggatttcaaaggctcttggctc
atgaatttcagcattctttcagcttgaggctgttgctgcttggcagtgaa
tgcagctcttgggtcattcattctctctgagccccagagacactgctaca
ctgtctgtggccctcagccgttttcctgggaaaggctcacactaacccag
tttcctttcctgtaagcagctggcttcctcttctcggattctctctcttc
ttaaattcttttcttttttcaaccattttagtgttggaatatttcagttg
tacagaaaagtaagaaaataaaaaatattcaaatatgttttgttgaattt
gaacattttttttctgtgtttgcttcaaattccttaaagtaactaaagct
cacagatccaactaaaagcttttgttgtatatacccatgtacatgtgtcc
cacatctgtggccattatcctgaattacaatatgaatatgatcccattat
ggaaaaatttaattgtagtgctagggatagaactcaggacctgaacatgt
aaggcaagtgttctatctttgaaaagaataattggagcacacacatacat
attcctaacaatataccatctttacattgcatatttttgtactttacatg
aatggtattatttaaacaaagtgtggtgttgtgtgctttacaactccagc
actttgatggagactggggatcagaagttcaaggtcacctttagctacat
agtgagttcaaggatagcctggggtgagactcagcctcagatttttatac
catctcagtgaaactaccctgttccaatagcttgctgggaagcaggaaaa
acaattggttgacaggaagctagctcactggtgggctttagaaatgaatt
cttccactattattttcatagcaataatcatttgaaattaatgagagcca
atttcctacttccttaactttggacttaattaaacaaaaatgcatttgca
agtcctggtcctgttctcaatcacttcacaagagtgtaatgttatccgga
cctcttggctacaccacaaatcttgttggatacctcatggaagatttgga
atggctct
gaattcatcaggttgtatttatatgtttattcttatatctatctgtaaca
attataattaaagaaaaagagaccatgtatttgagaggcagttgagagga
aatgacgtggaggagattgaaaggagcagaaggaagacaggaatgatata
aatacaggacacatataaaatttaaatgttttatttaaaaaataataaat
ttttttaaattaaaaaagaaaattcagtttaatggctaagctctggtgaa
aggtctccgagttcctcattttaccagtccctaggaaaaattcacagatg
taatgatggcaaaggtcaacagctaacagatgaccatagctgtcctttga
gctttatgagtgcactgacctatctactcattcctgtatcatttaactga
gttggaagtttggagtaaaaatggaaagatcactacgatatgggaccaga
tgtccctaggaaccagatgtactcctctagtgcctaaggtaggactaaaa
accatccacctaccccaagacagaaaatcactcctctctctctcaccctc
cctccttcttcctttcctccctcctccttcctcatatacacacctttcat
acctatcctactaattttcaaaaagtcacatctaagacatttaactagaa
actaagttatgtgcacagcatccgtttgcctagaatcctcctgtttccaa
atctcccatttgggataaaccagtaaaactaccaagtctaagttacaaac
tttgggaaattcctaaatcctagaaccactggttcaaagttcaggggcca
gaagagactgagaacaatcttgggggttggtgaccagaggagcagtcatg
gggaaatgactggaccatggagaacagtaaggaccaaaacaagacagttc
ttttccaggttttccatccctttcttcaccccccaggaaagacagagact
ccaaacagacctgagatatgatgacttttattctgtagaacatatccagg
tgacccagtccttaagccagaagctctgcttactccttgttggctgtctt
tggtgagaatgccaacaccccactatatcgccatcgcaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_90359993_90361118
seq2: B6Ng01-200L06.b_48_1205

seq1  GAATTCAGGGTTCACAAGCAGGCCCCTTAGCTTGGCCTCATCCCTGCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGTTCACAAGCAGGCCCCTTAGCTTGGCCTCATCCCTGCAGC  50

seq1  CTTTATTTGATTCATTATTTAGTTGGTAGGATTTCAAAGGCTCTTGGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTGATTCATTATTTAGTTGGTAGGATTTCAAAGGCTCTTGGCTC  100

seq1  ATGAATTTCAGCATTCTTTCAGCTTGAGGCTGTTGCTGCTTGGCAGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTTCAGCATTCTTTCAGCTTGAGGCTGTTGCTGCTTGGCAGTGAA  150

seq1  TGCAGCTCTTGGGTCATTCATTCTCTCTGAGCCCCAGAGACACTGCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTCTTGGGTCATTCATTCTCTCTGAGCCCCAGAGACACTGCTACA  200

seq1  CTGTCTGTGGCCCTCAGCCGTTTTCCTGGGAAAGGCTCACACTAACCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTGGCCCTCAGCCGTTTTCCTGGGAAAGGCTCACACTAACCCAG  250

seq1  TTTCCTTTCCTGTAAGCAGCTGGCTTCCTCTTCTCGGATTCTCTCTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCCTGTAAGCAGCTGGCTTCCTCTTCTCGGATTCTCTCTCTTC  300

seq1  TTAAATTCTTTTCTTTTTTCAACCATTTTAGTGTTGGAATATTTCAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTCTTTTCTTTTTTCAACCATTTTAGTGTTGGAATATTTCAGTTG  350

seq1  TACAGAAAAGTAAGAAAATAAAAAATATTCAAATATGTTTTGTTGAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAAAGTAAGAAAATAAAAAATATTCAAATATGTTTTGTTGAATTT  400

seq1  GAACATTTTTTTTCTGTGTTTGCTTCAAATTCCTTAAAGTAACTAAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTTTTTTCTGTGTTTGCTTCAAATTCCTTAAAGTAACTAAAGCT  450

seq1  CACAGATCCAACTAAAAGCTTTTGTTGTATATACCCATGTACATGTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATCCAACTAAAAGCTTTTGTTGTATATACCCATGTACATGTGTCC  500

seq1  CACATCTGTGGCCATTATCCTGAATTACAATATGAATATGATCCCATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGTGGCCATTATCCTGAATTACAATATGAATATGATCCCATTAT  550

seq1  GGAAAAATTTAATTGTAGTGCTAGGGATAGAACTCAGGACCTGAACATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATTTAATTGTAGTGCTAGGGATAGAACTCAGGACCTGAACATGT  600

seq1  AAGGCAAGTGTTCTATCTTTGAAAAGAATAATTGGAGCACACACATACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAGTGTTCTATCTTTGAAAAGAATAATTGGAGCACACACATACAT  650

seq1  ATTCCTAACAATATACCATCTTTACATTGCATATTTTTGTACTTTACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAACAATATACCATCTTTACATTGCATATTTTTGTACTTTACATG  700

seq1  AATGGTATTA-TTAAAC-AAGTGTGGTGTTGTGTGC-TTACAACTCCAGC  747
      |||||||||| |||||| |||||||||||||||||| |||||||||||||
seq2  AATGGTATTATTTAAACAAAGTGTGGTGTTGTGTGCTTTACAACTCCAGC  750

seq1  AC-TTGATGGAGACTGGGGATCAGAAGTTCAAGGTCACC-TTAGCTACAT  795
      || |||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACTTTGATGGAGACTGGGGATCAGAAGTTCAAGGTCACCTTTAGCTACAT  800

seq1  AGTGAGTTCAAGGATAGCCTGGGGTGAGACTCAGCCTCAGA-TTTTATAC  844
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGTGAGTTCAAGGATAGCCTGGGGTGAGACTCAGCCTCAGATTTTTATAC  850

seq1  CATCTCAGTG-AACTACCCTGTTCC-ATAGC-TGCTGGGAAGCAGG-AAA  890
      |||||||||| |||||||||||||| ||||| |||||||||||||| |||
seq2  CATCTCAGTGAAACTACCCTGTTCCAATAGCTTGCTGGGAAGCAGGAAAA  900

seq1  ACAA-TGGTTGACAGG-AGCTAGTTCACTGGT-GGCTTTAGAAATG-ATT  936
      |||| ||||||||||| |||||| |||||||| ||||||||||||| |||
seq2  ACAATTGGTTGACAGGAAGCTAGCTCACTGGTGGGCTTTAGAAATGAATT  950

seq1  CTTCCACTATTA-TTTCATAGTAAT-ATCA-TTGAA--TTATGAGAGCCC  981
      |||||||||||| |||||||| ||| |||| |||||  | ||||||||| 
seq2  CTTCCACTATTATTTTCATAGCAATAATCATTTGAAATTAATGAGAGCCA  1000

seq1  ATTTTCTACTTCTTTAAC-TTGGACTTAATTAGAC--AAATGCATTTGCA  1028
      |||| ||||||| ||||| ||||||||||||| ||  |||||||||||||
seq2  ATTTCCTACTTCCTTAACTTTGGACTTAATTAAACAAAAATGCATTTGCA  1050

seq1  AGTC--TGTCCTG-TCTC-ATCACTTCAC-AGAGTGTAATGTTATCC-GA  1072
      ||||   |||||| |||| |||||||||| ||||||||||||||||| ||
seq2  AGTCCTGGTCCTGTTCTCAATCACTTCACAAGAGTGTAATGTTATCCGGA  1100

seq1  CCTC-TGGTCACACCCCAAATC-TGTTGG--ACCTCATGGAAGGTTTGGG  1118
      |||| |||  ||||| |||||| ||||||  |||||||||||| ||||| 
seq2  CCTCTTGGCTACACCACAAATCTTGTTGGATACCTCATGGAAGATTTGGA  1150

seq1  ATGGCTCT  1126
      ||||||||
seq2  ATGGCTCT  1158

seq1: chr3_90473831_90474908
seq2: B6Ng01-200L06.g_64_1155 (reverse)

seq1  TCCTTGCGATGGTGATAAAAGTGGGTG-TGGCA-TCTCA-CAAAGACAGC  47
      |||||||||||| |||| |   ||||| ||||| ||||| ||||||||||
seq2  TCCTTGCGATGGCGATATAGTGGGGTGTTGGCATTCTCACCAAAGACAGC  50

seq1  C-ACAAGGAGT-AGCAGAGCTTCTGGCCT-AGGGCTGGGTC-CCTGGATA  93
      | ||||||||| ||||||||||||||| | ||| ||||||| ||||||||
seq2  CAACAAGGAGTAAGCAGAGCTTCTGGCTTAAGGACTGGGTCACCTGGATA  100

seq1  TG-TCTACAGAAT-AAAGTCATCATATCTCAGGTCTGTTT-GAGTCTCTT  140
      || |||||||||| |||||||||||||||||||||||||| ||||||| |
seq2  TGTTCTACAGAATAAAAGTCATCATATCTCAGGTCTGTTTGGAGTCTC-T  149

seq1  GTCTTTCCT-GGGGGTGAAGGAAGGGATGGAAAA-CTGG-AAAGAACTGT  187
      ||||||||| |||||||||| ||||||||||||| |||| ||||||||||
seq2  GTCTTTCCTGGGGGGTGAAGAAAGGGATGGAAAACCTGGAAAAGAACTGT  199

seq1  CTTGTTTTGGTCCTTACTGTTCTCCATGGTCCAGTCCTTT-CCCATGACT  236
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  CTTGTTTTGGTCCTTACTGTTCTCCATGGTCCAGTCATTTCCCCATGACT  249

seq1  GCTCCTCTGGTCACCAACCCCC-AGATTGTTCTCAGTCTCTTCTGGCCCC  285
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCTCCTCTGGTCACCAACCCCCAAGATTGTTCTCAGTCTCTTCTGGCCCC  299

seq1  TGAACTTTGAACCAGTGGTTCTAGGATTTAGGAATTTCCCAAAGTTTGTA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTGAACCAGTGGTTCTAGGATTTAGGAATTTCCCAAAGTTTGTA  349

seq1  ACTTAGACTTGGTAGTTTTACTGGTTTATCCCAAATGGGAGATTTGGAAA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGACTTGGTAGTTTTACTGGTTTATCCCAAATGGGAGATTTGGAAA  399

seq1  CAGGAGGATTCTAGGCAAACGGATGCTGTGCACATAACTTAGTTTCTAGT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGATTCTAGGCAAACGGATGCTGTGCACATAACTTAGTTTCTAGT  449

seq1  TAAATGTCTTAGATGTGACTTTTTGAAAATTAGTAGGATAGGTATGAAAG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTCTTAGATGTGACTTTTTGAAAATTAGTAGGATAGGTATGAAAG  499

seq1  GTGTGTATATGAGGAAGGAGGAGGGAGGAAAGGAAGAAGGAGGGAGGGTG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATATGAGGAAGGAGGAGGGAGGAAAGGAAGAAGGAGGGAGGGTG  549

seq1  AGAGAGAGAGGAGTGATTTTCTGTCTTGGGGTAGGTGGATGGTTTTTAGT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGGAGTGATTTTCTGTCTTGGGGTAGGTGGATGGTTTTTAGT  599

seq1  CCTACCTTAGGCACTAGAGGAGTACATCTGGTTCCTAGGGACATCTGGTC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTTAGGCACTAGAGGAGTACATCTGGTTCCTAGGGACATCTGGTC  649

seq1  CCATATCGTAGTGATCTTTCCATTTTTACTCCAAACTTCCAACTCAGTTA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCGTAGTGATCTTTCCATTTTTACTCCAAACTTCCAACTCAGTTA  699

seq1  AATGATACAGGAATGAGTAGATAGGTCAGTGCACTCATAAAGCTCAAAGG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATACAGGAATGAGTAGATAGGTCAGTGCACTCATAAAGCTCAAAGG  749

seq1  ACAGCTATGGTCATCTGTTAGCTGTTGACCTTTGCCATCATTACATCTGT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTATGGTCATCTGTTAGCTGTTGACCTTTGCCATCATTACATCTGT  799

seq1  GAATTTTTCCTAGGGACTGGTAAAATGAGGAACTCGGAGACCTTTCACCA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTCCTAGGGACTGGTAAAATGAGGAACTCGGAGACCTTTCACCA  849

seq1  GAGCTTAGCCATTAAACTGAATTTTCTTTTTTAATTTAAAAAAATTTATT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTAGCCATTAAACTGAATTTTCTTTTTTAATTTAAAAAAATTTATT  899

seq1  ATTTTTTAAATAAAACATTTAAATTTTATATGTGTCCTGTATTTATATCA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAATAAAACATTTAAATTTTATATGTGTCCTGTATTTATATCA  949

seq1  TTCCTGTCTTCCTTCTGCTCCTTTCAATCTCCTCCACGTCATTTCCTCTC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCTTCCTTCTGCTCCTTTCAATCTCCTCCACGTCATTTCCTCTC  999

seq1  AACTGCCTCTCAAATACATGGTCTCTTTTTCTTTAATTATAATTGTTACA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCTCTCAAATACATGGTCTCTTTTTCTTTAATTATAATTGTTACA  1049

seq1  GATAGATATAAGAATAAACATATAAATACAACCTGATGAATTC  1078
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATATAAGAATAAACATATAAATACAACCTGATGAATTC  1092