BAC Information

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BAC

Clone NameB6Ng01-200M05
Chromosome3 (Build37)
Map Location 59,514,426 - 59,515,461
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732
Downstream geneLOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200M05.bB6Ng01-200M05.g
ACCGA021733GA021734
length1,1671,166
definitionB6Ng01-200M05.b B6Ng01-200M05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccttaatagggacggggtttcgttttctctctctcttgcttct
tgcactctggctcctgaagatgtaagcaataaagctttgccgcagaagat
tctggtttgttgcgtctttcctggccggtcgtgagaacgcgtctaataac
aattggtgccgaattccgggacgagaaattccgggacgagaaaaaactcg
ggactggcgcaaggaagatccctcattccagaaccagaactgcgggtcgc
ggtaataaaggttcccgtaaagcagactgttaagaaggattcaactacat
gaattcagaacttttcagctggggaacggcggtaacccgtaagtatagct
ttacgaggtaagcctggccttgaactttctaaggaaattcaagacagtct
atcagaagtaaagtggaaaatagctttataaggtatgtttggccttgaat
tttttctagtgttagaagcccttttgttccttttcacatgttatcaagtg
gttaaggcagggaggattctagatgaaattcagggcaatctatcagaagt
aaagcggggagagagagtaggagcaaagagaaaatatggtacacaaaata
agtatacaggcctttccaagggtcttgaacccgaggaaaagtttaggtca
ggtaagaatacctggggagagattagaaggaaggaaaagaaaaaagaaaa
gaaaaaagatcgattagcggaggtctctaggagatactcgtcactagatg
agctcaggaagccagctcttagtagctctgaagcagatgaagaattctcc
tctgaggaaacagactgggaggaagaagcagctcattatgagaaaaaagg
gtaccagccaggtaaagtgctagctaatcagttaaggaagccaaaagcgg
ctggcgaaggccagtttgctgattgggcctcaagggcagtcggcttcaag
gtccgcccttatgcggagtccccgcctgcgttagtgcgtcagcaatgcgc
agagagatgcgcaaaagaaggcatgcgcaaagaggcagtgcgtcaaacct
cattcatttccagaagaggaccaaaggaaaatacaacagcattccgtctg
agagcccgaagggtggctggtccacgccttcgctagaatacatttacaaa
attaaagaagtgtgccg
gaattcagtaagaatgttacctattcagtaacactcaaatttacgtctag
tagagacagtgaaaataatcaggcattacaatttatttgaatagagctag
aaagctcagaatagtctacatagtaattacttaggacaagagccaagtca
cacccaaacacaggaatacacaatggcctaggaaataggtgggttgtagt
attattcatgaaagggttagtagaaaggaattcccctggtgcagtttttt
ttcactaggcctagaggaatagcataatcaggtatttactaaaggacccc
tggtggtggatttaacaatggactagcattgtatcagagcattcatctgg
ctcccaccacctttttatgtatacattttctttttttgtttcaagaacca
gtgtaacttgttggatatattcacccagccttcttgtttttcttctgtat
taaaagcctggtgtttgcttggaaaaaaattacatccagatacagcactc
ccttgtgtctgtgtctgtttgtcatttctcacagacccttgctcacctgc
aaccagaaccccgtttcctgcagattggagacccaatagaggttcgtctg
cagcagccatccgtgcaacagaaggtgcacatggaaagtacaattgcaaa
aataggaaaagaaatattactatgtatgccaccctagatccaaataaatg
ctgaacctccccagctcaaagatcagtctgcctctgccttcccagtggtt
aaaggcacatggcactagatccaggttatatacaaattagcttaaatgga
gccatctaataatgtaatgatccatgaccctaggagacacaacaggctga
caacacaaagcctagtgccacttctctgctcaaagacttcttcaatcttt
gagaataaacaactttcccctttgctggtttaggtgtcttgtacttcttt
aactgaatgggatcaaaagaaaagaaaaaaaaatcttgccttctaactta
aatatccaaaatatgtcatagaactgaacttcagctctctaattggggaa
aatacctggctcatttctggtgattgctagggctttattgttttttacaa
cttggtgttctggaattggtatgttttggctttttatgttgaaagacaca
gtgggagatgaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_59514426_59515461
seq2: B6Ng01-200M05.g_173_1232

seq1  CAGAATAGTCTACATAGTAATTACTTAGGACAAGAGCCAAGTCACACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAGTCTACATAGTAATTACTTAGGACAAGAGCCAAGTCACACCCA  50

seq1  AACACAGGAATACACAATGGCCTAGGAAATAGGTGGGTTGTAGTATTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGGAATACACAATGGCCTAGGAAATAGGTGGGTTGTAGTATTATT  100

seq1  CATGAAAGGGTTAGTAGAAAGGAATTCCCCTGGTGCAGTTTTTTTTCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGGGTTAGTAGAAAGGAATTCCCCTGGTGCAGTTTTTTTTCACT  150

seq1  AGGCCTAGAGGAATAGCATAATCAGGTATTTACTAAAGGACCCCTGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTAGAGGAATAGCATAATCAGGTATTTACTAAAGGACCCCTGGTGG  200

seq1  TGGATTTAACAATGGACTAGCATTGTATCAGAGCATTCATCTGGCTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTAACAATGGACTAGCATTGTATCAGAGCATTCATCTGGCTCCCA  250

seq1  CCACCTTTTTATGTATACATTTTCTTTTTTTGTTTCAAGAACCAGTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTTTTATGTATACATTTTCTTTTTTTGTTTCAAGAACCAGTGTAA  300

seq1  CTTGTTGGATATATTCACCCAGCCTTCTTGTTTTTCTTCTGTATTAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGGATATATTCACCCAGCCTTCTTGTTTTTCTTCTGTATTAAAAG  350

seq1  CCTGGTGTTTGCTTGGAAAAAAATTACATCCAGATACAGCACTCCCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGTTTGCTTGGAAAAAAATTACATCCAGATACAGCACTCCCTTGT  400

seq1  GTCTGTGTCTGTTTGTCATTTCTCACAGACCCTTGCTCACCTGCAACCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTCTGTTTGTCATTTCTCACAGACCCTTGCTCACCTGCAACCAG  450

seq1  AACCCCGTTTCCTGCAGATTGGAGACCCAATAGAGGTTCGTCTGCAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCGTTTCCTGCAGATTGGAGACCCAATAGAGGTTCGTCTGCAGCAG  500

seq1  CCATCCGTGCAACAGAAGGTGCACATGGAAAGTACAATTGCAAAAATAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCGTGCAACAGAAGGTGCACATGGAAAGTACAATTGCAAAAATAGG  550

seq1  AAAAGAAATATTACTATGTATGCCACCCTAGATCCAAATAAATGCTGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATATTACTATGTATGCCACCCTAGATCCAAATAAATGCTGAAC  600

seq1  CTCCCCAGCTCAAAGATCAGTCTGCCTCTGCCTTCCCAGTGGTTAAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAGCTCAAAGATCAGTCTGCCTCTGCCTTCCCAGTGGTTAAAGGC  650

seq1  ACATGGCACTAGATCCAGGTTATATACAAA-TAGCTTAAATGGAGCCATC  699
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACATGGCACTAGATCCAGGTTATATACAAATTAGCTTAAATGGAGCCATC  700

seq1  TAATAATGTAATGAT-CATGACCCTAGGAGACACAACAGGCTGACAAACA  748
      ||||||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  TAATAATGTAATGATCCATGACCCTAGGAGACACAACAGGCTGAC-AACA  749

seq1  CAAAGCCTAGTGCCACTTCTCTGCTCAAAGAC-TCTTCAATCCTTGAGAA  797
      |||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  CAAAGCCTAGTGCCACTTCTCTGCTCAAAGACTTCTTCAATCTTTGAGAA  799

seq1  TAAAC-ACTTT-CCCTTTGCT-GTTTA-GTGTCTTGTACTTCTTTAACTG  843
      ||||| ||||| ||||||||| ||||| ||||||||||||||||||||||
seq2  TAAACAACTTTCCCCTTTGCTGGTTTAGGTGTCTTGTACTTCTTTAACTG  849

seq1  -ATGGGATCAAAAGAAAAGAAAAAAAAATCCTGCCTTCTACCT--AATAT  890
       ||||||||||||||||||||||||||||| ||||||||| ||  |||||
seq2  AATGGGATCAAAAGAAAAGAAAAAAAAATCTTGCCTTCTAACTTAAATAT  899

seq1  CCAAAATATGTCATAGAACTG-ACTTCAG--CTCTAATTGGGG-AAATAC  936
      ||||||||||||||||||||| |||||||  |||||||||||| ||||||
seq2  CCAAAATATGTCATAGAACTGAACTTCAGCTCTCTAATTGGGGAAAATAC  949

seq1  CT-GCTCA-TTCTGGTGAATGTTAGGGTTTTATTG-TTTTTACAACTTGG  983
      || ||||| ||||||||| || ||||| ||||||| ||||||||||||||
seq2  CTGGCTCATTTCTGGTGATTGCTAGGGCTTTATTGTTTTTTACAACTTGG  999

seq1  TG-TCTGGA--TTGTATGTTTGGGC-TTTTAAGTTG-AAGA-ACAGT--G  1025
      || ||||||  | |||||||| ||| ||||| |||| |||| |||||  |
seq2  TGTTCTGGAATTGGTATGTTTTGGCTTTTTATGTTGAAAGACACAGTGGG  1049

seq1  AGATGATTTTT  1036
      |||||| ||||
seq2  AGATGAATTTT  1060