BAC Information

Click to search

BAC

Clone NameB6Ng01-200M11
Chromosome3 (Build37)
Map Location 91,088,459 - 91,088,704
singlet/doubletsinglet
Overlap genenone
Upstream geneGatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
Downstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200M11.g
ACCGA021743
length249
definitionB6Ng01-200M11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
acggtcatatattcagacttggccatctctggtagaatgatcaattacat
cactatggcctcaagaaaaagcacaatctatacagattgggctgttgctc
acaattcttgggtcttcagttcaatttctcttcatactgaatggaattgc
ccagtgtcaatagctaaccaggttggtgagcatccccaaatacctcagta
cttccctatagagtttcttaactggggaaaactgatgatttgtttggca
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_91088459_91088704
seq2: B6Ng01-200M11.g_77_323

seq1  GGTCATAGACACAGACATGGCCATCTCTGGTAGAATGAGCAATTACATCA  50
      ||||||| |  ||||| ||||||||||||||||||||| |||||||||||
seq2  GGTCATATATTCAGACTTGGCCATCTCTGGTAGAATGATCAATTACATCA  50

seq1  CTATGGCCTCAAGAAAAAGCACAATCTATACAGAATGGGCTGTTGCTCAC  100
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTATGGCCTCAAGAAAAAGCACAATCTATACAGATTGGGCTGTTGCTCAC  100

seq1  AATTCTTGGGTCTTCAGTTCAATTTCTCTTCATACTGAATGGAATTGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGGGTCTTCAGTTCAATTTCTCTTCATACTGAATGGAATTGCCC  150

seq1  AGTGTCAATAGCTAACCAGGTTGGTGAGCATCCCCAAATACCTCAGTAC-  199
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTGTCAATAGCTAACCAGGTTGGTGAGCATCCCCAAATACCTCAGTACT  200

seq1  TCCCTATAGAGTTTCTTAACTGGGGAAAACTGATGATTTGTTTGGCA  246
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATAGAGTTTCTTAACTGGGGAAAACTGATGATTTGTTTGGCA  247