BAC Information

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BAC

Clone NameB6Ng01-200P09
Chromosome3 (Build37)
Map Location 92,127,854 - 92,311,718
singlet/doubletdoublet
Overlap geneSprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4
Upstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b
Downstream geneLOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200P09.bB6Ng01-200P09.g
ACCGA021868GA021869
length1,080975
definitionB6Ng01-200P09.b B6Ng01-200P09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,127,854 - 92,128,927)(92,310,745 - 92,311,718)
sequence
gaattcatgattgcagagcagaggttgccggtgacagaccactgaagcaa
tagcttaaaattcacatctcaaaccatgacagaaggcatagataataata
gataataatttatattacaatttagctttttttgtttttaattatttatt
ttttaatagtccagattttatcccccccaccctggtctatcctctaactg
ttccacatcccatatatcctccctaccccctttctccatgataatatgca
tccctaccccctacctcccaaccctgtgacctctaaactccctggggcct
ccagtctcttgagggttaagtacatcatttctcattgaacacagacatgg
caatcctctgctgtgtatgtgttgggggccatatcagctggttatgctgc
ctgttttgtggcccagtgtttgatagatctcagggtccagtgtaattgag
actactggtcttcctacagggtttcccttctcctcagcttctttctgtct
ttccctaattcaaccataggggtacctatttatatgtttttttaacaaag
tcatctgttgatggagtttgacaaggagagtatttaggaaagaaactaga
aaccagaagcaacttgtagaaaattgctgtgtataatttctatccattta
aaaatacactagaaaataaaattgctataatgctgaaatatatttaatta
ctaattgaatattttgatggtattaaataaaatttgatattttcaataat
gtctttaaaaaccatataattatctgatattgattaaaaaatttgtgtca
tccaaaatggcctttaatagtatagaatacatcaatcaaaacttataaaa
acaataaggtttaatttcatgctgtcagttttaagatgaaaatgattttt
tagtaaagtctttgaaattagaaaatgatatatgtagctactttggagac
taaatgtaggactgatggtcttctgtgtatgtgtctcttgtgtctgacta
tctgtcttttctgtctctgccccttgccctccctcactctctcaacccct
ggtggggtcttttgtgagcacagatgtgtg
gaattctcaattgcttgttagtctgttagttggccagtcaccagtgacta
gagtgtgagttctgtcctaaatatcctttcttgctcatagggaacttgta
cttttgctgggtataaaaattactgacatgtataagatagccaagcattc
ttaaagtaaatatgatcttcaagtatatggaatataaaggatagactgta
ataaacatcaaattgaatttgagaatataagacagttcagaaagtactag
aaaattatgggttcaacttattaagccaaaatgagattggaatgaaggtt
caggaaccatggttgatccattagagtacctacattctcctacaagttcc
cagataatggctaacaagcatctgtaactccagttccagggaatctgaca
gcctcctttacctttcattggcactaggcatagctgtatccaggcaaaca
tacatgtaggcaaaatgcccatttacataaagtagtaaagtaatatatga
atttttgaaaagttaaagacaaattatctgatgctgaatttctatttcag
ttcatccataaacctattcatgcatccaacttatggttcatatttatagg
cacatatatgtgtgactgtctagattatttgattataaaaatgactgaat
gataaagacaagttatctcctaggatcaaggaatttagatttggtactta
gtttacagacatcttatagtttacagaagcatcataagcatattacatgt
gaaacattccaaacaggtatagataaaacgcttactgtactaaggagagg
aggaaaacatattttgtaaagatttagagaacagggttgtggagaagagg
tatttaaaatatttttcttaggtctgggaatattaattttagtagtagaa
aatttgtctaggatgcacatgtccttgagtttgatcccacataaaggaaa
atggaaaggaaaggagaggagagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_92127854_92128927
seq2: B6Ng01-200P09.b_46_1125

seq1  GAATTCATGATTGCAGAGCAGAGGTTGCCGGTGACAGACCACTGAAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATTGCAGAGCAGAGGTTGCCGGTGACAGACCACTGAAGCAA  50

seq1  TAGCTTAAAATTCACATCTCAAACCATGACAGAAGGCATAGATAATAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTAAAATTCACATCTCAAACCATGACAGAAGGCATAGATAATAATA  100

seq1  GATAATAATTTATATTACAATTTAGCTTTTTTTGTTTTTAATTATTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATAATTTATATTACAATTTAGCTTTTTTTGTTTTTAATTATTTATT  150

seq1  TTTTAATAGTCCAGATTTTATCCCCCCCACCCTGGTCTATCCTCTAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAGTCCAGATTTTATCCCCCCCACCCTGGTCTATCCTCTAACTG  200

seq1  TTCCACATCCCATATATCCTCCCTACCCCCTTTCTCCATGATAATATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATCCCATATATCCTCCCTACCCCCTTTCTCCATGATAATATGCA  250

seq1  TCCCTACCCCCTACCTCCCAACCCTGTGACCTCTAAACTCCCTGGGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACCCCCTACCTCCCAACCCTGTGACCTCTAAACTCCCTGGGGCCT  300

seq1  CCAGTCTCTTGAGGGTTAAGTACATCATTTCTCATTGAACACAGACATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTCTTGAGGGTTAAGTACATCATTTCTCATTGAACACAGACATGG  350

seq1  CAATCCTCTGCTGTGTATGTGTTGGGGGCCATATCAGCTGGTTATGCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTCTGCTGTGTATGTGTTGGGGGCCATATCAGCTGGTTATGCTGC  400

seq1  CTGTTTTGTGGCCCAGTGTTTGATAGATCTCAGGGTCCAGTGTAATTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGTGGCCCAGTGTTTGATAGATCTCAGGGTCCAGTGTAATTGAG  450

seq1  ACTACTGGTCTTCCTACAGGGTTTCCCTTCTCCTCAGCTTCTTTCTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGGTCTTCCTACAGGGTTTCCCTTCTCCTCAGCTTCTTTCTGTCT  500

seq1  TTCCCTAATTCAACCATAGGGGTACCTATTTATATGTTTTTTTAACAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAATTCAACCATAGGGGTACCTATTTATATGTTTTTTTAACAAAG  550

seq1  TCATCTGTTGATGGAGTTTGACAAGGAGAGTATTTAGGAAAGAAACTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTTGATGGAGTTTGACAAGGAGAGTATTTAGGAAAGAAACTAGA  600

seq1  AACCAGAAGCAACTTGTAGAAAATTGCTGTGTATAATTTCTATCCATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAAGCAACTTGTAGAAAATTGCTGTGTATAATTTCTATCCATTTA  650

seq1  AAAATACACTAGAAAATAAAATTGCTATAATGCTGAAATATATTTAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACACTAGAAAATAAAATTGCTATAATGCTGAAATATATTTAATTA  700

seq1  CTAATTGAATATTTTGATGGTATTAAATAAAATTTGATATTTTCAATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGAATATTTTGATGGTATTAAATAAAATTTGATATTTTCAATAAT  750

seq1  GTCTTTAAAAACCATATAATTATCTGATATTGATTAAAAAATTTGTGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAAAAACCATATAATTATCTGATATTGATTAAAAAATTTGTGTCA  800

seq1  TCCAAAATGGCCTTTAATAGTATAGAATACATCAATCAAAACTTATAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAATGGCCTTTAATAGTATAGAATACATCAATCAAAACTTATAAAA  850

seq1  ACAATAAGGTTTTAATTCATGCTGTCAGTTTTAAGATGAAAATGA-TTTT  899
      |||||||||||| | |||||||||||||||||||||||||||||| ||||
seq2  ACAATAAGGTTTAATTTCATGCTGTCAGTTTTAAGATGAAAATGATTTTT  900

seq1  TAGTAAAGTCTTTGAAATTAGAAAATGATATATGTAGCTAC-TTGGAGAC  948
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAGTAAAGTCTTTGAAATTAGAAAATGATATATGTAGCTACTTTGGAGAC  950

seq1  TAAAATGTAAGACTGATGGTCTTTCTGTGTATGTGTCTC-TGTGTCTGAC  997
      | ||||||| ||||||||||| ||||||||||||||||| ||||||||||
seq2  T-AAATGTAGGACTGATGGTC-TTCTGTGTATGTGTCTCTTGTGTCTGAC  998

seq1  TATCTGTC-TTTCTGTCTCTGCCCC-TGCCCTCCCTCACTCTCTCAACCC  1045
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  TATCTGTCTTTTCTGTCTCTGCCCCTTGCCCTCCCTCACTCTCTCAACCC  1048

seq1  CTG--TGGGTC-TTTGTGAGCACAGATGTGTG  1074
      |||   ||||| ||||||||||||||||||||
seq2  CTGGTGGGGTCTTTTGTGAGCACAGATGTGTG  1080

seq1: chr3_92310745_92311718
seq2: B6Ng01-200P09.g_68_1042 (reverse)

seq1  TCCTCTCCTCTCCTTTCCTTTCCTTTTTCCTTTTATGTGGGATCAAACTC  50
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  TCCTCTCCTCTCCTTTCCTTTCCATTTTCC-TTTATGTGGGATCAAACTC  49

seq1  AAGGACATGTGCATTCTAGACAAATTTTCTACTACTAAA--TTATATTCC  98
      |||||||||||||| ||||||||||||||||||||||||  | |||||||
seq2  AAGGACATGTGCATCCTAGACAAATTTTCTACTACTAAAATTAATATTCC  99

seq1  CAGACCTAAG-AAAATATTTTAAATACCTCTTTCTCCACAACCCTGTTCT  147
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  CAGACCTAAGAAAAATATTTTAAATACCTC-TTCTCCACAACCCTGTTCT  148

seq1  CTAAATCTTTACAAAATATGTTTTCCTCCTCTCCTTAGTACAGTAAGCGT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCTTTACAAAATATGTTTTCCTCCTCTCCTTAGTACAGTAAGCGT  198

seq1  TTTATCTATACCTGTTTGGAATGTTTCACATGTAATATGCTTATGATGCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTATACCTGTTTGGAATGTTTCACATGTAATATGCTTATGATGCT  248

seq1  TCTGTAAACTATAAGATGTCTGTAAACTAAGTACCAAATCTAAATTCCTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAACTATAAGATGTCTGTAAACTAAGTACCAAATCTAAATTCCTT  298

seq1  GATCCTAGGAGATAACTTGTCTTTATCATTCAGTCATTTTTATAATCAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTAGGAGATAACTTGTCTTTATCATTCAGTCATTTTTATAATCAAA  348

seq1  TAATCTAGACAGTCACACATATATGTGCCTATAAATATGAACCATAAGTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTAGACAGTCACACATATATGTGCCTATAAATATGAACCATAAGTT  398

seq1  GGATGCATGAATAGGTTTATGGATGAACTGAAATAGAAATTCAGCATCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCATGAATAGGTTTATGGATGAACTGAAATAGAAATTCAGCATCAG  448

seq1  ATAATTTGTCTTTAACTTTTCAAAAATTCATATATTACTTTACTACTTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTGTCTTTAACTTTTCAAAAATTCATATATTACTTTACTACTTTA  498

seq1  TGTAAATGGGCATTTTGCCTACATGTATGTTTGCCTGGATACAGCTATGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGGGCATTTTGCCTACATGTATGTTTGCCTGGATACAGCTATGC  548

seq1  CTAGTGCCAATGAAAGGTAAAGGAGGCTGTCAGATTCCCTGGAACTGGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCCAATGAAAGGTAAAGGAGGCTGTCAGATTCCCTGGAACTGGAG  598

seq1  TTACAGATGCTTGTTAGCCATTATCTGGGAACTTGTAGGAGAATGTAGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATGCTTGTTAGCCATTATCTGGGAACTTGTAGGAGAATGTAGGT  648

seq1  ACTCTAATGGATCAACCATGGTTCCTGAACCTTCATTCCAATCTCATTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAATGGATCAACCATGGTTCCTGAACCTTCATTCCAATCTCATTTT  698

seq1  GGCTTAATAAGTTGAACCCATAATTTTCTAGTACTTTCTGAACTGTCTTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAATAAGTTGAACCCATAATTTTCTAGTACTTTCTGAACTGTCTTA  748

seq1  TATTCTCAAATTCAATTTGATGTTTATTACAGTCTATCCTTTATATTCCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCAAATTCAATTTGATGTTTATTACAGTCTATCCTTTATATTCCA  798

seq1  TATACTTGAAGATCATATTTACTTTAAGAATGCTTGGCTATCTTATACAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTGAAGATCATATTTACTTTAAGAATGCTTGGCTATCTTATACAT  848

seq1  GTCAGTAATTTTTATACCCAGCAAAAGTACAAGTTCCCTATGAGCAAGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTAATTTTTATACCCAGCAAAAGTACAAGTTCCCTATGAGCAAGAA  898

seq1  AGGATATTTAGGACAGAACTCACACTCTAGTCACTGGTGACTGGCCAACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATTTAGGACAGAACTCACACTCTAGTCACTGGTGACTGGCCAACT  948

seq1  AACAGACTAACAAGCAATTGAGAATTC  974
      |||||||||||||||||||||||||||
seq2  AACAGACTAACAAGCAATTGAGAATTC  975