BAC Information

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BAC

Clone NameB6Ng01-201H05
Chromosome3 (Build37)
Map Location 81,570,131 - 81,702,655
singlet/doubletdoublet
Overlap genenone
Upstream geneGria2, Glrb, EG626841, Pdgfc, LOC229443
Downstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940, EG633285, Lrat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201H05.bB6Ng01-201H05.g
ACCGA022216GA022217
length1,1581,115
definitionB6Ng01-201H05.b B6Ng01-201H05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,701,490 - 81,702,655)(81,570,131 - 81,571,237)
sequence
gaattctgccaattttcctggcacatgatctttctgctcatgtaactaat
gttgtaagcaccacaaatcataaatgccagtaaagaaaggttttcccaag
ggctaacttgatctcattttttttttttaacatacattggttactttgtt
atttgagtcagactcctctgggctgtgcagttggttaaaagctagctgtg
tgccctttaatagaagactttgcaggctgatatttcattgctttcagatt
agttgattaacaacctacaccacaacattaattttggttcctgtgaaatt
gttcaggctaataggtctcaaagattgttgttcaatttatccgcctatta
gaagaaatcattaaatagaagtaaacagcttttagaagtaatgagttttt
cattttctggtgggagcacttttctttaagaaggcacaatgaatcacata
gttaaagcactaattaaaaatgttatcctttgatttaccttattttcttc
aactatattaaataagagtcagtcatggggctggtgtggaaagatcaaag
agccttgtgctcacatttgtcattaagaaattgataatgattctactctg
tacctattcttgtctgtgtgagaactgggagttgggggaggaaatccatt
taatcacacaaatgaggaaaaatatatttttcattaacagaaaagctatt
ttgaaaatatagaagctaagtcaaatatagaagtgacagtatgcatatat
ggaatatattaaaattaactacctgatcattgctagagagtatgcgtgta
tttatattgtttttttaactagcattattggaagttcagttctcatcaca
cccttgagtttcaaggtgaactgagaagctccagttttgcttgtgttttt
ttatttattttaatagagcagattctcctttctaacactggcttgctcta
gaaccagaatgtgaagttcgttggaccacaaatttcccaaacgacaatca
aacacagttggactcactaattcacgtttcctgctgtgtctacatttcat
tatgttcacctccaatttgtggacacagtgtctgtacatagggaattata
ttatatatcctcatttggctgtcaactctaaagcaatgagaatagcattc
tccaggtg
gaattcttcttacctgaaagttacaaaatcaacagcagaggtacttcaag
tggggcaaccttacttcattcattcttcctgaatacgttaagaaaagatt
gaagaatgtcatatttttcacgaggccactcaagtgactatttcaagaat
atatgctgaagagattcaacatattctagatattttggatctgctaataa
agataaaacagctgagacttctgctgtgtgttttagtttgggttttattg
ttgtgaagagacgccatgaccaaagcaactcttaaaagtaaaacatttaa
ttgggttggtttacagttcagaggtttagtttattattttcatggtggga
aagaatggcagcgtgtgcaggcagaacatggtactggagaaggagctgag
aattctacatcttaatcagcagacagtagaaggaggttgtgtaccatact
aatcagacttgagcttcttagacctcaaaacccacctactcagtgacaca
tttcctccaacaaggctatacctcctgatcacactactccctatgaacca
agcatttaaacacctaagtctctggggaccattcctattcaaattaccac
actgtaccttcagagaatcgataatatagtaaagacctcaaagagaatga
atcatcatagattcctgggaggaaaagtctgtttctgcagttaggaaaga
tctgagaggccttcagaatagctagccaagttgattggtaaaggcctttc
tctgaacaaatctaacacataaaattagaatagttgtctgtgtttcaagt
gtatgactaaaaacaccacattataagacataaagaaacaagaaaaactg
acaaaaggaagcaaaatgactctccagaaattaatttcttgacaactgga
gttgtatgaaagggctaggtcaaataagcaagaactgttgatgattcaga
aaaaaatgatacatcaaaataggaatgaacaaaagaatttctgggaaaaa
tgagcataaatgtcaaaattatccacaatggtaatgagggaaataggaga
ctgcaccattatgagggaacaagattgatcaatcgagcagcatcagtgaa
ctcagcagtgaacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81701490_81702655
seq2: B6Ng01-201H05.b_50_1207 (reverse)

seq1  CACCTGGAGATTTCTATTTCTTCATTGCTATAGAGTTTGACAGGCAAAAA  50
      |||||||||| | |||||   |||||||| ||||| ||||||| |  |||
seq2  CACCTGGAGAATGCTATT--CTCATTGCTTTAGAG-TTGACAGCC--AAA  45

seq1  TGAGGATATATATATATATATCACATAGTACAGACACTGTGTCACAAAAT  100
      |||||||||||| |||||  || |   ||||||||||||||||   ||||
seq2  TGAGGATATATA-ATATAATTCCCTATGTACAGACACTGTGTCCACAAAT  94

seq1  GGGAGTTGAACATAATGAAATGTTAGACACAGCAGGAAACGTGAATTAGT  150
       |||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  TGGAGGTGAACATAATGAAATG-TAGACACAGCAGGAAACGTGAATTAGT  143

seq1  GAGGTCCAACTGTGTTTGATTGTCGTTTGGGAAATTTGTGGTCCAACGAA  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GA-GTCCAACTGTGTTTGATTGTCGTTTGGGAAATTTGTGGTCCAACGAA  192

seq1  CTTCACATTCTGGTTCTAGAGCAAGCCAGTGTTAGAAAGGAGAATCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACATTCTGGTTCTAGAGCAAGCCAGTGTTAGAAAGGAGAATCTGCT  242

seq1  CTATTAAAATAAATAAAAAAACACAAGCAAAACTGGAGCTTCTCAGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAAATAAATAAAAAAACACAAGCAAAACTGGAGCTTCTCAGTTCA  292

seq1  CCTTGAAACTCAAGGGTGTGATGAGAACTGAACTTCCAATAATGCTAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAACTCAAGGGTGTGATGAGAACTGAACTTCCAATAATGCTAGTT  342

seq1  AAAAAAACAATATAAATACACGCATACTCTCTAGCAATGATCAGGTAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAATATAAATACACGCATACTCTCTAGCAATGATCAGGTAGTT  392

seq1  AATTTTAATATATTCCATATATGCATACTGTCACTTCTATATTTGACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAATATATTCCATATATGCATACTGTCACTTCTATATTTGACTTA  442

seq1  GCTTCTATATTTTCAAAATAGCTTTTCTGTTAATGAAAAATATATTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTATATTTTCAAAATAGCTTTTCTGTTAATGAAAAATATATTTTTC  492

seq1  CTCATTTGTGTGATTAAATGGATTTCCTCCCCCAACTCCCAGTTCTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTGTGTGATTAAATGGATTTCCTCCCCCAACTCCCAGTTCTCACA  542

seq1  CAGACAAGAATAGGTACAGAGTAGAATCATTATCAATTTCTTAATGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAGAATAGGTACAGAGTAGAATCATTATCAATTTCTTAATGACAA  592

seq1  ATGTGAGCACAAGGCTCTTTGATCTTTCCACACCAGCCCCATGACTGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGCACAAGGCTCTTTGATCTTTCCACACCAGCCCCATGACTGACT  642

seq1  CTTATTTAATATAGTTGAAGAAAATAAGGTAAATCAAAGGATAACATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTAATATAGTTGAAGAAAATAAGGTAAATCAAAGGATAACATTTT  692

seq1  TAATTAGTGCTTTAACTATGTGATTCATTGTGCCTTCTTAAAGAAAAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGTGCTTTAACTATGTGATTCATTGTGCCTTCTTAAAGAAAAGTG  742

seq1  CTCCCACCAGAAAATGAAAAACTCATTACTTCTAAAAGCTGTTTACTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCAGAAAATGAAAAACTCATTACTTCTAAAAGCTGTTTACTTCT  792

seq1  ATTTAATGATTTCTTCTAATAGGCGGATAAATTGAACAACAATCTTTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATGATTTCTTCTAATAGGCGGATAAATTGAACAACAATCTTTGAG  842

seq1  ACCTATTAGCCTGAACAATTTCACAGGAACCAAAATTAATGTTGTGGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTAGCCTGAACAATTTCACAGGAACCAAAATTAATGTTGTGGTGT  892

seq1  AGGTTGTTAATCAACTAATCTGAAAGCAATGAAATATCAGCCTGCAAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTTAATCAACTAATCTGAAAGCAATGAAATATCAGCCTGCAAAGT  942

seq1  CTTCTATTAAAGGGCACACAGCTAGCTTTTAACCAACTGCACAGCCCAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATTAAAGGGCACACAGCTAGCTTTTAACCAACTGCACAGCCCAGA  992

seq1  GGAGTCTGACTCAAATAACAAAGTAACCAATGTATGTTAAAAAAAAAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTGACTCAAATAACAAAGTAACCAATGTATGTTAAAAAAAAAAAA  1042

seq1  TGAGATCAAGTTAGCCCTTGGGAAAACCTTTCTTTACTGGCATTTATGAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCAAGTTAGCCCTTGGGAAAACCTTTCTTTACTGGCATTTATGAT  1092

seq1  TTGTGGTGCTTACAACATTAGTTACATGAGCAGAAAGATCATGTGCCAGG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTGCTTACAACATTAGTTACATGAGCAGAAAGATCATGTGCCAGG  1142

seq1  AAAATTGGCAGAATTC  1166
      ||||||||||||||||
seq2  AAAATTGGCAGAATTC  1158

seq1: chr3_81570131_81571237
seq2: B6Ng01-201H05.g_66_1180

seq1  GAATTCTTCTTACCTGAAAGTTACAAAATCAACAGCAGAGGTACTTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTACCTGAAAGTTACAAAATCAACAGCAGAGGTACTTCAAG  50

seq1  TGGGGCAACCTTACTTCATTCATTCTTCCTGAATACGTTAAGAAAAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAACCTTACTTCATTCATTCTTCCTGAATACGTTAAGAAAAGATT  100

seq1  GAAGAATGTCATATTTTTCACGAGGCCACTCAAGTGACTATTTCAAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGTCATATTTTTCACGAGGCCACTCAAGTGACTATTTCAAGAAT  150

seq1  ATATGCTGAAGAGATTCAACATATTCTAGATATTTTGGATCTGCTAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTGAAGAGATTCAACATATTCTAGATATTTTGGATCTGCTAATAA  200

seq1  AGATAAAACAGCTGAGACTTCTGCTGTGTGTTTTAGTTTGGGTTTTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAACAGCTGAGACTTCTGCTGTGTGTTTTAGTTTGGGTTTTATTG  250

seq1  TTGTGAAGAGACGCCATGACCAAAGCAACTCTTAAAAGTAAAACATTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAGAGACGCCATGACCAAAGCAACTCTTAAAAGTAAAACATTTAA  300

seq1  TTGGGTTGGTTTACAGTTCAGAGGTTTAGTTTATTATTTTCATGGTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTGGTTTACAGTTCAGAGGTTTAGTTTATTATTTTCATGGTGGGA  350

seq1  AAGAATGGCAGCGTGTGCAGGCAGAACATGGTACTGGAGAAGGAGCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGGCAGCGTGTGCAGGCAGAACATGGTACTGGAGAAGGAGCTGAG  400

seq1  AATTCTACATCTTAATCAGCAGACAGTAGAAGGAGGTTGTGTACCATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTACATCTTAATCAGCAGACAGTAGAAGGAGGTTGTGTACCATACT  450

seq1  AATCAGACTTGAGCTTCTTAGACCTCAAAACCCACCTACTCAGTGACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGACTTGAGCTTCTTAGACCTCAAAACCCACCTACTCAGTGACACA  500

seq1  TTTCCTCCAACAAGGCTATACCTCCTGATCACACTACTCCCTATGAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCAACAAGGCTATACCTCCTGATCACACTACTCCCTATGAACCA  550

seq1  AGCATTTAAACACCTAAGTCTCTGGGGACCATTCCTATTCAAATTACCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTAAACACCTAAGTCTCTGGGGACCATTCCTATTCAAATTACCAC  600

seq1  ACTGTACCTTCAGAGAATCGATAATATAGTAAAGACCTCAAAGAGAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTACCTTCAGAGAATCGATAATATAGTAAAGACCTCAAAGAGAATGA  650

seq1  ATCATCATAGATTCCTGGGAGGAAAAGTCTGTTTCTGCAGTTAGGAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCATAGATTCCTGGGAGGAAAAGTCTGTTTCTGCAGTTAGGAAAGA  700

seq1  TCTGAGAGGCCTTCAGAATAGCTAGCCAAGTTGATTGGTAAAGGCCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAGGCCTTCAGAATAGCTAGCCAAGTTGATTGGTAAAGGCCTTTC  750

seq1  TCTGAACAAATCTAACACATAAAATTAGAATAGTTGTCTGTGTTTCAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACAAATCTAACACATAAAATTAGAATAGTTGTCTGTGTTTCAAGT  800

seq1  GTATGACTAAAAACACCACATTATAAGACATAAAGAAACAAGAAAAACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGACTAAAAACACCACATTATAAGACATAAAGAAACAAGAAAAACTG  850

seq1  ACAAAAGGAAGCAAAATGACTCTCCAGAAATTAA-TTCTTGACAACTGGA  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAAAAGGAAGCAAAATGACTCTCCAGAAATTAATTTCTTGACAACTGGA  900

seq1  GTTGTATG-AAGGGCTAGGTCAAATAAGCAAGAACTGTTGATGATTTCAG  948
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  GTTGTATGAAAGGGCTAGGTCAAATAAGCAAGAACTGTTGATGA-TTCAG  949

seq1  AAAAAAATGATACATC-AAATAGGAATG-ACAAAAGAATTTCTGGAAAAA  996
      |||||||||||||||| ||||||||||| |||||||||||||||| ||||
seq2  AAAAAAATGATACATCAAAATAGGAATGAACAAAAGAATTTCTGGGAAAA  999

seq1  ATGAGCATAAATGTCAAAATAATCACCAATGGTAATGAGGGGAAATAGGA  1046
      |||||||||||||||||||| |||  |||||||||||| |||||||||||
seq2  ATGAGCATAAATGTCAAAATTATCCACAATGGTAATGA-GGGAAATAGGA  1048

seq1  GAACTGGAACATTATGAAGGGACAAAGATTTGATCAA-CCAGAAGCA--A  1093
      | |||| | ||||||| |||||  |||| |||||||| | || ||||  |
seq2  G-ACTGCACCATTATG-AGGGAACAAGA-TTGATCAATCGAGCAGCATCA  1095

seq1  G------CATCAGTGAACAC  1107
      |      || ||||||||||
seq2  GTGAACTCAGCAGTGAACAC  1115