BAC Information

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BAC

Clone NameB6Ng01-201K19
Chromosome3 (Build37)
Map Location 114,090,114 - 114,216,319
singlet/doubletdoublet
Overlap geneLOC100043220
Upstream geneLOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3, Col11a1
Downstream geneOlfm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201K19.bB6Ng01-201K19.g
ACCGA022380GA022381
length7541,134
definitionB6Ng01-201K19.b B6Ng01-201K19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,090,114 - 114,090,864)(114,215,194 - 114,216,319)
sequence
gaattcttttatacagggctgtgtaaagcttttgaccctcactctgatga
catagagattaataactgaacacaggcagatggaatatccatgagaactt
tagcattttagcattttgttttaagcatccgttagaattttcttcctgga
tgttgctttcactgcatcacaccaatcttgatgtatctttacttttaggt
tcagtactattaaaaatgttcttgtttttgtttttgttttttggtggggg
ggaggacttcctctttaatgtgatataggagttatgtttattgattgatt
ttttttaaatactggagggcataattcagataactgttttaaccagactt
tagtttattatcatctgagaatgacttcggtatgatctctattagtttgc
atttcttaagataagagcattgtggaacatggtcatgtttcctgtgcaat
tgtatataatttcataacactaacatctggagttcaagactgtaaatagt
agataatactttggatgtattcttaaatttgatttgcaagtattttttgg
agaacatttgtatctctgttcataaagaatatgaaccaataattttcttt
tatgttgagtttttgtgtggttttgctatcatggtgtaagttgctttaga
aaacagaatcttaaaatgttccttcaggttctctttttgtagaaaacatt
gaggactgcactagttctttgaaggtctggtagaacttctctgctgaatg
catc

gaattcttctctgaagcctcttgtaccaggtcccacagttcaaatgaacc
tcaacaccccggttttccaggcttctagtcaaatgacccattaaggctca
ctgaaatcattccgttgcgtctctaatcctatttgccaaaattcacattc
ctccaaacaagaatatggtcagacccatcatatctcagtccctgttagcc
agcttcaattaaatggttttctttataggagatgccttggtcccgtgtct
cttcacagcaatgaaactctaagatgctattgttaccatcatatttaaaa
gtctgtatatttcagtttgctgacttacacaatctatttaaagtgcataa
tttaaaatgtattgattgcgatgatatcaaaaaaaaaaaacacttccttt
ccaagaaaatgtgtggagctaagggaaaattggaatgtaaactatgctat
aatattacaccgttctggaatcttaaggaagcactgatttaaaatatata
tttattattgaaataaaaattagatggaattcacaaattacaagaaaacc
aagaagaaaaataaatacctaaacaataagggagaatatgttttaaaaaa
ctgaggaagattttgtaaaaataaagtagaaaacaacatgaaattacaat
agcaatctgaaaataaagcatgtctctaaactttaacaattcattaattt
cctgattctataagattttcataaacgtgaatatttagtatttacatgga
tatatcccgaaagcttataaaattaacagtagaagatatcgtatactaac
agtataacttataattaaatggttatttctgatattttaccttaggtatt
tatttttaaagaataataaattctttaatatgatgataaatttcttggaa
ttcatcggtttgttttttgaagtgaagatatttttgaatgtttgaattga
aagtataacataaatttgctttccttctcaatatgtagaaagaaaacagt
tgatgtgtttaaggctagtttaggtatgttctgcattgaacatttgcaga
tgttggattagggatcacacaaagttcacaggaggacatttcactattga
agcattaaatttctgtataatggcttccttagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_114090114_114090864
seq2: B6Ng01-201K19.b_46_799

seq1  GAATTCTTTTATACAGGGCTGTGTAAAGCTTTTGACCCTCACTCTGATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTATACAGGGCTGTGTAAAGCTTTTGACCCTCACTCTGATGA  50

seq1  CATAGAGATTAATAACTGAACACAGGCAGATGGAATATCCATGAGAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGATTAATAACTGAACACAGGCAGATGGAATATCCATGAGAACTT  100

seq1  TAGCATTTTAGCATTTTGTTTTAAGCATCCGTTAGAATTTTCTTCCTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTTTAGCATTTTGTTTTAAGCATCCGTTAGAATTTTCTTCCTGGA  150

seq1  TGTTGCTTTCACTGCATCACACCAATCTTGATGTATCTTTACTTTTAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTTTCACTGCATCACACCAATCTTGATGTATCTTTACTTTTAGGT  200

seq1  TCAGTACTATTAAAAATGTTCTTGTTTTTGTTTTTGTTTTTTGGTGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACTATTAAAAATGTTCTTGTTTTTGTTTTTGTTTTTTGGTGGGGG  250

seq1  GGAGGACTTCCTCTTTAATGTGATATAGGAGTTATGTTTATTGATTGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACTTCCTCTTTAATGTGATATAGGAGTTATGTTTATTGATTGATT  300

seq1  TTTTTTAAATACTGGAGGGCATAATTCAGATAACTGTTTTAACCAGACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAATACTGGAGGGCATAATTCAGATAACTGTTTTAACCAGACTT  350

seq1  TAGTTTATTATCATCTGAGAATGACTTCGGTATGATCTCTATTAGTTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTATTATCATCTGAGAATGACTTCGGTATGATCTCTATTAGTTTGC  400

seq1  ATTTCTTAAGATAAGAGCATTGTGGAACATGGTCATGTTTCCTGTGCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTAAGATAAGAGCATTGTGGAACATGGTCATGTTTCCTGTGCAAT  450

seq1  TGTATATAATTTCATAACACTAACATCTGGAGTTCAAGACTGTAAATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATAATTTCATAACACTAACATCTGGAGTTCAAGACTGTAAATAGT  500

seq1  AGATAATACTTTGGATGTATTCTTAAATTTGATTTGCAAGTATTTTTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATACTTTGGATGTATTCTTAAATTTGATTTGCAAGTATTTTTTGG  550

seq1  AGAACATTTGTATCTCTGTTCATAAAGAATATGAACCAATAATTTTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATTTGTATCTCTGTTCATAAAGAATATGAACCAATAATTTTCTTT  600

seq1  TATGTTGAGTTTTTGTGTGGTTTTGCTATCATGGTGTAAGTTGCTTTAG-  649
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATGTTGAGTTTTTGTGTGGTTTTGCTATCATGGTGTAAGTTGCTTTAGA  650

seq1  AAACAGAATCTTAAAATGTTCCTTCAGGTTCTC-TTTTGTAGAAAACATT  698
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAACAGAATCTTAAAATGTTCCTTCAGGTTCTCTTTTTGTAGAAAACATT  700

seq1  GAGGACTGCACTAGTTCTTTGAAGGTCTGGTAGAAC-TCTCTGCTGAATG  747
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGGACTGCACTAGTTCTTTGAAGGTCTGGTAGAACTTCTCTGCTGAATG  750

seq1  CATC  751
      ||||
seq2  CATC  754


seq1: chr3_114215194_114216319
seq2: B6Ng01-201K19.g_64_1197 (reverse)

seq1  GTCTAA-GAAGC--ATATACAGAATATTAAATGCTACCATAGTGAAAATG  47
      |||||| |||||   ||||||||| ||| |||||| | |||||| |||||
seq2  GTCTAAGGAAGCCATTATACAGAA-ATTTAATGCTTCAATAGTG-AAATG  48

seq1  TCCTTCCTGTGAACTTTGTGTGATCCCTAATTCCAACATCTGCAAATG-T  96
      ||| |||||||||||||||||||||||||| ||||||||||||||||| |
seq2  TCC-TCCTGTGAACTTTGTGTGATCCCTAA-TCCAACATCTGCAAATGTT  96

seq1  CAATGCAG-ACATACTTAAACTAG-CTTAAACACATC-ACTG-TTTCTTT  142
      |||||||| |||||| |||||||| |||||||||||| |||| |||||||
seq2  CAATGCAGAACATACCTAAACTAGCCTTAAACACATCAACTGTTTTCTTT  146

seq1  CTACATATTGAGAAGGAAAGC-AATTTATG-TATACTTTCAATTCAAACA  190
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  CTACATATTGAGAAGGAAAGCAAATTTATGTTATACTTTCAATTCAAACA  196

seq1  TTC-AAAATATCTTCACTTCAAAAAACAAACCGATGAATTCC-AGAAATT  238
      ||| |||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTCAAAAATATCTTCACTTCAAAAAACAAACCGATGAATTCCAAGAAATT  246

seq1  TATCATCATATTAAAGAATTTATTATTCTTTAAAAATAAATACCTAAGGT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCATATTAAAGAATTTATTATTCTTTAAAAATAAATACCTAAGGT  296

seq1  AAAATATCAGAAATAACCATTTAATTATAAGTTATACTGTTAGTATACGA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCAGAAATAACCATTTAATTATAAGTTATACTGTTAGTATACGA  346

seq1  TATCTTCTACTGTTAATTTTATAAGCTTTCGGGATATATCCATGTAAATA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCTACTGTTAATTTTATAAGCTTTCGGGATATATCCATGTAAATA  396

seq1  CTAAATATTCACGTTTATGAAAATCTTATAGAATCAGGAAATTAATGAAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATATTCACGTTTATGAAAATCTTATAGAATCAGGAAATTAATGAAT  446

seq1  TGTTAAAGTTTAGAGACATGCTTTATTTTCAGATTGCTATTGTAATTTCA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAGTTTAGAGACATGCTTTATTTTCAGATTGCTATTGTAATTTCA  496

seq1  TGTTGTTTTCTACTTTATTTTTACAAAATCTTCCTCAGTTTTTTAAAACA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTTCTACTTTATTTTTACAAAATCTTCCTCAGTTTTTTAAAACA  546

seq1  TATTCTCCCTTATTGTTTAGGTATTTATTTTTCTTCTTGGTTTTCTTGTA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCCCTTATTGTTTAGGTATTTATTTTTCTTCTTGGTTTTCTTGTA  596

seq1  ATTTGTGAATTCCATCTAATTTTTATTTCAATAATAAATATATATTTTAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGAATTCCATCTAATTTTTATTTCAATAATAAATATATATTTTAA  646

seq1  ATCAGTGCTTCCTTAAGATTCCAGAACGGTGTAATATTATAGCATAGTTT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGCTTCCTTAAGATTCCAGAACGGTGTAATATTATAGCATAGTTT  696

seq1  ACATTCCAATTTTCCCTTAGCTCCACACATTTTCTTGGAAAGGAAGTGTT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCAATTTTCCCTTAGCTCCACACATTTTCTTGGAAAGGAAGTGTT  746

seq1  TTTTTTTTTTGATATCATCGCAATCAATACATTTTAAATTATGCACTTTA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGATATCATCGCAATCAATACATTTTAAATTATGCACTTTA  796

seq1  AATAGATTGTGTAAGTCAGCAAACTGAAATATACAGACTTTTAAATATGA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATTGTGTAAGTCAGCAAACTGAAATATACAGACTTTTAAATATGA  846

seq1  TGGTAACAATAGCATCTTAGAGTTTCATTGCTGTGAAGAGACACGGGACC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACAATAGCATCTTAGAGTTTCATTGCTGTGAAGAGACACGGGACC  896

seq1  AAGGCATCTCCTATAAAGAAAACCATTTAATTGAAGCTGGCTAACAGGGA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATCTCCTATAAAGAAAACCATTTAATTGAAGCTGGCTAACAGGGA  946

seq1  CTGAGATATGATGGGTCTGACCATATTCTTGTTTGGAGGAATGTGAATTT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATATGATGGGTCTGACCATATTCTTGTTTGGAGGAATGTGAATTT  996

seq1  TGGCAAATAGGATTAGAGACGCAACGGAATGATTTCAGTGAGCCTTAATG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAATAGGATTAGAGACGCAACGGAATGATTTCAGTGAGCCTTAATG  1046

seq1  GGTCATTTGACTAGAAGCCTGGAAAACCGGGGTGTTGAGGTTCATTTGAA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTTGACTAGAAGCCTGGAAAACCGGGGTGTTGAGGTTCATTTGAA  1096

seq1  CTGTGGGACCTGGTACAAGAGGCTTCAGAGAAGAATTC  1126
      ||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGACCTGGTACAAGAGGCTTCAGAGAAGAATTC  1134


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